data_4TT3 # _model_server_result.job_id U4W7pWWPpmZgua9GhFL5Eg _model_server_result.datetime_utc '2024-11-13 19:53:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4tt3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":601}' # _entry.id 4TT3 # _exptl.entry_id 4TT3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4TT3 _cell.length_a 108.385 _cell.length_b 154.545 _cell.length_c 272.04 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TT3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details Decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 N N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 176 A THR 176 1_555 L MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc2 K O2G ATP . A ATP 601 1_555 L MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc3 K O3G ATP . A ATP 601 1_555 L MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? metalc ? metalc4 K O2B ATP . A ATP 601 1_555 L MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc5 L MG MG . A MG 602 1_555 W O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc6 L MG MG . A MG 602 1_555 W O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc7 L MG MG . A MG 602 1_555 W O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc8 B OG1 THR 176 B THR 176 1_555 O MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc9 N O2G ATP . B ATP 601 1_555 O MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc10 N O2B ATP . B ATP 601 1_555 O MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc11 O MG MG . B MG 602 1_555 X O HOH . B HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc12 O MG MG . B MG 602 1_555 X O HOH . B HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc13 O MG MG . B MG 602 1_555 X O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc14 C OG1 THR 176 C THR 176 1_555 R MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc15 Q O2G ATP . C ATP 600 1_555 R MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc16 Q O2B ATP . C ATP 600 1_555 R MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc17 R MG MG . C MG 601 1_555 Y O HOH . C HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc18 R MG MG . C MG 601 1_555 Y O HOH . C HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc19 R MG MG . C MG 601 1_555 Y O HOH . C HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc20 D OG1 THR 165 D THR 163 1_555 T MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc21 S O2B ADP . D ADP 600 1_555 T MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc22 T MG MG . D MG 601 1_555 Z O HOH . D HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc23 T MG MG . D MG 601 1_555 Z O HOH . D HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc24 T MG MG . D MG 601 1_555 Z O HOH . D HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc25 T MG MG . D MG 601 1_555 Z O HOH . D HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc26 F OG1 THR 165 F THR 163 1_555 V MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc27 U O2B ADP . F ADP 600 1_555 V MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc28 V MG MG . F MG 601 1_555 BA O HOH . F HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc29 V MG MG . F MG 601 1_555 BA O HOH . F HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc30 V MG MG . F MG 601 1_555 BA O HOH . F HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc31 V MG MG . F MG 601 1_555 BA O HOH . F HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 4TT3 _atom_sites.fract_transf_matrix[1][1] 0.009226 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006471 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003676 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 5 ATP A 1 601 600 ATP ATP . L 6 MG A 1 602 601 MG MO6 . M 7 GOL A 1 603 2 GOL GOL . N 5 ATP B 1 601 600 ATP ATP . O 6 MG B 1 602 601 MG MO6 . P 7 GOL B 1 603 1 GOL GOL . Q 5 ATP C 1 600 600 ATP ATP . R 6 MG C 1 601 601 MG MO6 . S 8 ADP D 1 600 600 ADP ADP . T 6 MG D 1 601 601 MG MO6 . U 8 ADP F 1 600 600 ADP ADP . V 6 MG F 1 601 601 MG MO6 . W 9 HOH A 1 701 601 HOH MO6 . W 9 HOH A 2 702 601 HOH MO6 . W 9 HOH A 3 703 601 HOH MO6 . X 9 HOH B 1 701 601 HOH MO6 . X 9 HOH B 2 702 601 HOH MO6 . X 9 HOH B 3 703 601 HOH MO6 . Y 9 HOH C 1 701 601 HOH MO6 . Y 9 HOH C 2 702 601 HOH MO6 . Y 9 HOH C 3 703 601 HOH MO6 . Y 9 HOH C 4 704 23 HOH HOH . Z 9 HOH D 1 701 601 HOH MO6 . Z 9 HOH D 2 702 601 HOH MO6 . Z 9 HOH D 3 703 601 HOH MO6 . Z 9 HOH D 4 704 601 HOH MO6 . Z 9 HOH D 5 705 35 HOH HOH . AA 9 HOH E 1 501 8 HOH HOH . AA 9 HOH E 2 502 16 HOH HOH . AA 9 HOH E 3 503 48 HOH HOH . AA 9 HOH E 4 504 50 HOH HOH . AA 9 HOH E 5 505 54 HOH HOH . BA 9 HOH F 1 701 601 HOH MO6 . BA 9 HOH F 2 702 601 HOH MO6 . BA 9 HOH F 3 703 601 HOH MO6 . BA 9 HOH F 4 704 601 HOH MO6 . BA 9 HOH F 5 705 14 HOH HOH . BA 9 HOH F 6 706 20 HOH HOH . BA 9 HOH F 7 707 40 HOH HOH . BA 9 HOH F 8 708 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . N 5 52.707 -30.03 -32.737 1 64.08 ? PG ATP 601 B 1 HETATM 2 O O1G ATP . . . N 5 52.687 -28.52 -32.732 1 64.36 ? O1G ATP 601 B 1 HETATM 3 O O2G ATP . . . N 5 53.765 -30.653 -31.857 1 63.98 ? O2G ATP 601 B 1 HETATM 4 O O3G ATP . . . N 5 51.342 -30.661 -32.609 1 63.53 ? O3G ATP 601 B 1 HETATM 5 P PB ATP . . . N 5 54.421 -29.69 -34.938 1 64.6 ? PB ATP 601 B 1 HETATM 6 O O1B ATP . . . N 5 53.969 -28.329 -35.41 1 63.84 ? O1B ATP 601 B 1 HETATM 7 O O2B ATP . . . N 5 55.63 -29.802 -34.041 1 64.83 ? O2B ATP 601 B 1 HETATM 8 O O3B ATP . . . N 5 53.176 -30.424 -34.226 1 64.3 ? O3B ATP 601 B 1 HETATM 9 P PA ATP . . . N 5 55.441 -32.01 -36.128 1 67.48 ? PA ATP 601 B 1 HETATM 10 O O1A ATP . . . N 5 56.923 -31.724 -36.131 1 67.42 ? O1A ATP 601 B 1 HETATM 11 O O2A ATP . . . N 5 54.842 -32.801 -34.99 1 67.91 ? O2A ATP 601 B 1 HETATM 12 O O3A ATP . . . N 5 54.662 -30.606 -36.238 1 65.89 ? O3A ATP 601 B 1 HETATM 13 O O5' ATP . . . N 5 55.062 -32.724 -37.523 1 69 ? O5' ATP 601 B 1 HETATM 14 C C5' ATP . . . N 5 53.77 -33.287 -37.755 1 70.7 ? C5' ATP 601 B 1 HETATM 15 C C4' ATP . . . N 5 53.889 -34.7 -38.319 1 72.05 ? C4' ATP 601 B 1 HETATM 16 O O4' ATP . . . N 5 54.332 -34.643 -39.677 1 73.15 ? O4' ATP 601 B 1 HETATM 17 C C3' ATP . . . N 5 54.873 -35.579 -37.553 1 73.1 ? C3' ATP 601 B 1 HETATM 18 O O3' ATP . . . N 5 54.19 -36.691 -36.966 1 74.44 ? O3' ATP 601 B 1 HETATM 19 C C2' ATP . . . N 5 55.909 -36.033 -38.566 1 73.61 ? C2' ATP 601 B 1 HETATM 20 O O2' ATP . . . N 5 56.055 -37.457 -38.57 1 74.25 ? O2' ATP 601 B 1 HETATM 21 C C1' ATP . . . N 5 55.412 -35.548 -39.921 1 74.21 ? C1' ATP 601 B 1 HETATM 22 N N9 ATP . . . N 5 56.493 -34.865 -40.681 1 75.86 ? N9 ATP 601 B 1 HETATM 23 C C8 ATP . . . N 5 57.046 -33.675 -40.374 1 76.12 ? C8 ATP 601 B 1 HETATM 24 N N7 ATP . . . N 5 58.004 -33.34 -41.276 1 76.48 ? N7 ATP 601 B 1 HETATM 25 C C5 ATP . . . N 5 58.074 -34.327 -42.186 1 77.4 ? C5 ATP 601 B 1 HETATM 26 C C6 ATP . . . N 5 58.87 -34.609 -43.407 1 77.95 ? C6 ATP 601 B 1 HETATM 27 N N6 ATP . . . N 5 59.813 -33.741 -43.846 1 77.85 ? N6 ATP 601 B 1 HETATM 28 N N1 ATP . . . N 5 58.623 -35.765 -44.069 1 78.86 ? N1 ATP 601 B 1 HETATM 29 C C2 ATP . . . N 5 57.69 -36.647 -43.651 1 78.92 ? C2 ATP 601 B 1 HETATM 30 N N3 ATP . . . N 5 56.934 -36.448 -42.551 1 78.57 ? N3 ATP 601 B 1 HETATM 31 C C4 ATP . . . N 5 57.073 -35.331 -41.79 1 77.4 ? C4 ATP 601 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #