data_4TT3 # _model_server_result.job_id ned4EbvNJqjnO4U7XBUd8w _model_server_result.datetime_utc '2024-11-13 19:51:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4tt3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":603}' # _entry.id 4TT3 # _exptl.entry_id 4TT3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4TT3 _cell.length_a 108.385 _cell.length_b 154.545 _cell.length_c 272.04 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TT3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details Decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 M N N ? 7 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 176 A THR 176 1_555 L MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc2 K O2G ATP . A ATP 601 1_555 L MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc3 K O3G ATP . A ATP 601 1_555 L MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? metalc ? metalc4 K O2B ATP . A ATP 601 1_555 L MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc5 L MG MG . A MG 602 1_555 W O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc6 L MG MG . A MG 602 1_555 W O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc7 L MG MG . A MG 602 1_555 W O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc8 B OG1 THR 176 B THR 176 1_555 O MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc9 N O2G ATP . B ATP 601 1_555 O MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc10 N O2B ATP . B ATP 601 1_555 O MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc11 O MG MG . B MG 602 1_555 X O HOH . B HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc12 O MG MG . B MG 602 1_555 X O HOH . B HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc13 O MG MG . B MG 602 1_555 X O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc14 C OG1 THR 176 C THR 176 1_555 R MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc15 Q O2G ATP . C ATP 600 1_555 R MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc16 Q O2B ATP . C ATP 600 1_555 R MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc17 R MG MG . C MG 601 1_555 Y O HOH . C HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc18 R MG MG . C MG 601 1_555 Y O HOH . C HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc19 R MG MG . C MG 601 1_555 Y O HOH . C HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc20 D OG1 THR 165 D THR 163 1_555 T MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc21 S O2B ADP . D ADP 600 1_555 T MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc22 T MG MG . D MG 601 1_555 Z O HOH . D HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc23 T MG MG . D MG 601 1_555 Z O HOH . D HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc24 T MG MG . D MG 601 1_555 Z O HOH . D HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc25 T MG MG . D MG 601 1_555 Z O HOH . D HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc26 F OG1 THR 165 F THR 163 1_555 V MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc27 U O2B ADP . F ADP 600 1_555 V MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc28 V MG MG . F MG 601 1_555 BA O HOH . F HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc29 V MG MG . F MG 601 1_555 BA O HOH . F HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc30 V MG MG . F MG 601 1_555 BA O HOH . F HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc31 V MG MG . F MG 601 1_555 BA O HOH . F HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 222 n n C1 C2 GOL sing 223 n n C1 H11 GOL sing 224 n n C1 H12 GOL sing 225 n n O1 HO1 GOL sing 226 n n C2 O2 GOL sing 227 n n C2 C3 GOL sing 228 n n C2 H2 GOL sing 229 n n O2 HO2 GOL sing 230 n n C3 O3 GOL sing 231 n n C3 H31 GOL sing 232 n n C3 H32 GOL sing 233 n n O3 HO3 GOL sing 234 n n # _atom_sites.entry_id 4TT3 _atom_sites.fract_transf_matrix[1][1] 0.009226 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006471 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003676 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 5 ATP A 1 601 600 ATP ATP . L 6 MG A 1 602 601 MG MO6 . M 7 GOL A 1 603 2 GOL GOL . N 5 ATP B 1 601 600 ATP ATP . O 6 MG B 1 602 601 MG MO6 . P 7 GOL B 1 603 1 GOL GOL . Q 5 ATP C 1 600 600 ATP ATP . R 6 MG C 1 601 601 MG MO6 . S 8 ADP D 1 600 600 ADP ADP . T 6 MG D 1 601 601 MG MO6 . U 8 ADP F 1 600 600 ADP ADP . V 6 MG F 1 601 601 MG MO6 . W 9 HOH A 1 701 601 HOH MO6 . W 9 HOH A 2 702 601 HOH MO6 . W 9 HOH A 3 703 601 HOH MO6 . X 9 HOH B 1 701 601 HOH MO6 . X 9 HOH B 2 702 601 HOH MO6 . X 9 HOH B 3 703 601 HOH MO6 . Y 9 HOH C 1 701 601 HOH MO6 . Y 9 HOH C 2 702 601 HOH MO6 . Y 9 HOH C 3 703 601 HOH MO6 . Y 9 HOH C 4 704 23 HOH HOH . Z 9 HOH D 1 701 601 HOH MO6 . Z 9 HOH D 2 702 601 HOH MO6 . Z 9 HOH D 3 703 601 HOH MO6 . Z 9 HOH D 4 704 601 HOH MO6 . Z 9 HOH D 5 705 35 HOH HOH . AA 9 HOH E 1 501 8 HOH HOH . AA 9 HOH E 2 502 16 HOH HOH . AA 9 HOH E 3 503 48 HOH HOH . AA 9 HOH E 4 504 50 HOH HOH . AA 9 HOH E 5 505 54 HOH HOH . BA 9 HOH F 1 701 601 HOH MO6 . BA 9 HOH F 2 702 601 HOH MO6 . BA 9 HOH F 3 703 601 HOH MO6 . BA 9 HOH F 4 704 601 HOH MO6 . BA 9 HOH F 5 705 14 HOH HOH . BA 9 HOH F 6 706 20 HOH HOH . BA 9 HOH F 7 707 40 HOH HOH . BA 9 HOH F 8 708 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . M 7 16.476 -24.273 -5.439 1 73.36 ? C1 GOL 603 A 1 HETATM 2 O O1 GOL . . . M 7 15.896 -22.981 -5.65 1 72.77 ? O1 GOL 603 A 1 HETATM 3 C C2 GOL . . . M 7 17.738 -24.411 -6.286 1 73.61 ? C2 GOL 603 A 1 HETATM 4 O O2 GOL . . . M 7 18.893 -24.136 -5.482 1 74.05 ? O2 GOL 603 A 1 HETATM 5 C C3 GOL . . . M 7 17.843 -25.821 -6.862 1 73.5 ? C3 GOL 603 A 1 HETATM 6 O O3 GOL . . . M 7 17.087 -25.923 -8.076 1 72.98 ? O3 GOL 603 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #