data_4TT3
#
_model_server_result.job_id            SvOeL79YjjjwaoLTZhPu2Q 
_model_server_result.datetime_utc      '2024-11-28 03:10:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4tt3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":603}' 
#
_entry.id    4TT3 
#
_exptl.entry_id    4TT3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4TT3 
_cell.length_a            108.385 
_cell.length_b            154.545 
_cell.length_c            272.04 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4TT3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    Decameric 
_pdbx_struct_assembly.oligomeric_count      10 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 M N N 
? 7 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 176 A THR 176 1_555 L MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc2 K O2G ATP . A ATP 601 1_555 L MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc3 K O3G ATP . A ATP 601 1_555 L MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? 
metalc ? metalc4 K O2B ATP . A ATP 601 1_555 L MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc5 L MG MG . A MG 602 1_555 W O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc6 L MG MG . A MG 602 1_555 W O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc7 L MG MG . A MG 602 1_555 W O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc8 B OG1 THR 176 B THR 176 1_555 O MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc9 N O2G ATP . B ATP 601 1_555 O MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc10 N O2B ATP . B ATP 601 1_555 O MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc11 O MG MG . B MG 602 1_555 X O HOH . B HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc12 O MG MG . B MG 602 1_555 X O HOH . B HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc13 O MG MG . B MG 602 1_555 X O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc14 C OG1 THR 176 C THR 176 1_555 R MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc15 Q O2G ATP . C ATP 600 1_555 R MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc16 Q O2B ATP . C ATP 600 1_555 R MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc17 R MG MG . C MG 601 1_555 Y O HOH . C HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc18 R MG MG . C MG 601 1_555 Y O HOH . C HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc19 R MG MG . C MG 601 1_555 Y O HOH . C HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc20 D OG1 THR 165 D THR 163 1_555 T MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc21 S O2B ADP . D ADP 600 1_555 T MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc22 T MG MG . D MG 601 1_555 Z O HOH . D HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc23 T MG MG . D MG 601 1_555 Z O HOH . D HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc24 T MG MG . D MG 601 1_555 Z O HOH . D HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc25 T MG MG . D MG 601 1_555 Z O HOH . D HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc26 F OG1 THR 165 F THR 163 1_555 V MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc27 U O2B ADP . F ADP 600 1_555 V MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc28 V MG MG . F MG 601 1_555 BA O HOH . F HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc29 V MG MG . F MG 601 1_555 BA O HOH . F HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc30 V MG MG . F MG 601 1_555 BA O HOH . F HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc31 V MG MG . F MG 601 1_555 BA O HOH . F HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 222 n n 
C1 C2 GOL sing 223 n n 
C1 H11 GOL sing 224 n n 
C1 H12 GOL sing 225 n n 
O1 HO1 GOL sing 226 n n 
C2 O2 GOL sing 227 n n 
C2 C3 GOL sing 228 n n 
C2 H2 GOL sing 229 n n 
O2 HO2 GOL sing 230 n n 
C3 O3 GOL sing 231 n n 
C3 H31 GOL sing 232 n n 
C3 H32 GOL sing 233 n n 
O3 HO3 GOL sing 234 n n 
#
_atom_sites.entry_id                     4TT3 
_atom_sites.fract_transf_matrix[1][1]    0.009226 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006471 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003676 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 5 ATP A 1 601 600 ATP ATP . 
L 6 MG A 1 602 601 MG MO6 . 
M 7 GOL A 1 603 2 GOL GOL . 
N 5 ATP B 1 601 600 ATP ATP . 
O 6 MG B 1 602 601 MG MO6 . 
P 7 GOL B 1 603 1 GOL GOL . 
Q 5 ATP C 1 600 600 ATP ATP . 
R 6 MG C 1 601 601 MG MO6 . 
S 8 ADP D 1 600 600 ADP ADP . 
T 6 MG D 1 601 601 MG MO6 . 
U 8 ADP F 1 600 600 ADP ADP . 
V 6 MG F 1 601 601 MG MO6 . 
W 9 HOH A 1 701 601 HOH MO6 . 
W 9 HOH A 2 702 601 HOH MO6 . 
W 9 HOH A 3 703 601 HOH MO6 . 
X 9 HOH B 1 701 601 HOH MO6 . 
X 9 HOH B 2 702 601 HOH MO6 . 
X 9 HOH B 3 703 601 HOH MO6 . 
Y 9 HOH C 1 701 601 HOH MO6 . 
Y 9 HOH C 2 702 601 HOH MO6 . 
Y 9 HOH C 3 703 601 HOH MO6 . 
Y 9 HOH C 4 704 23 HOH HOH . 
Z 9 HOH D 1 701 601 HOH MO6 . 
Z 9 HOH D 2 702 601 HOH MO6 . 
Z 9 HOH D 3 703 601 HOH MO6 . 
Z 9 HOH D 4 704 601 HOH MO6 . 
Z 9 HOH D 5 705 35 HOH HOH . 
AA 9 HOH E 1 501 8 HOH HOH . 
AA 9 HOH E 2 502 16 HOH HOH . 
AA 9 HOH E 3 503 48 HOH HOH . 
AA 9 HOH E 4 504 50 HOH HOH . 
AA 9 HOH E 5 505 54 HOH HOH . 
BA 9 HOH F 1 701 601 HOH MO6 . 
BA 9 HOH F 2 702 601 HOH MO6 . 
BA 9 HOH F 3 703 601 HOH MO6 . 
BA 9 HOH F 4 704 601 HOH MO6 . 
BA 9 HOH F 5 705 14 HOH HOH . 
BA 9 HOH F 6 706 20 HOH HOH . 
BA 9 HOH F 7 707 40 HOH HOH . 
BA 9 HOH F 8 708 55 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 7 16.476 -24.273 -5.439 1 73.36 ? C1 GOL 603 A 1 
HETATM 2 O O1 GOL . . . M 7 15.896 -22.981 -5.65 1 72.77 ? O1 GOL 603 A 1 
HETATM 3 C C2 GOL . . . M 7 17.738 -24.411 -6.286 1 73.61 ? C2 GOL 603 A 1 
HETATM 4 O O2 GOL . . . M 7 18.893 -24.136 -5.482 1 74.05 ? O2 GOL 603 A 1 
HETATM 5 C C3 GOL . . . M 7 17.843 -25.821 -6.862 1 73.5 ? C3 GOL 603 A 1 
HETATM 6 O O3 GOL . . . M 7 17.087 -25.923 -8.076 1 72.98 ? O3 GOL 603 A 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           36 
_model_server_stats.create_model_time_ms    105 
_model_server_stats.query_time_ms           1096 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           6 
#