data_4TT5
#
_model_server_result.job_id            YG6Zs5QvcP5zXnl0-G82GA 
_model_server_result.datetime_utc      '2024-11-24 16:56:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4tt5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    4TT5 
#
_exptl.entry_id    4TT5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4TT5 
_cell.length_a            165.34 
_cell.length_b            165.34 
_cell.length_c            76.81 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4TT5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 317 A CYS 317 1_555 B FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc2 B FE HEM . A HEM 401 1_555 C N3 36Y . A 36Y 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 149 n n 
C1 C2 GOL sing 150 n n 
C1 H11 GOL sing 151 n n 
C1 H12 GOL sing 152 n n 
O1 HO1 GOL sing 153 n n 
C2 O2 GOL sing 154 n n 
C2 C3 GOL sing 155 n n 
C2 H2 GOL sing 156 n n 
O2 HO2 GOL sing 157 n n 
C3 O3 GOL sing 158 n n 
C3 H31 GOL sing 159 n n 
C3 H32 GOL sing 160 n n 
O3 HO3 GOL sing 161 n n 
#
_atom_sites.entry_id                     4TT5 
_atom_sites.fract_transf_matrix[1][1]    0.006048 
_atom_sites.fract_transf_matrix[1][2]    0.003492 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006984 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013019 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 401 410 HEM HEM . 
C 3 36Y A 1 402 500 36Y BPC . 
D 4 GOL A 1 403 550 GOL GOL . 
E 5 HOH A 1 501 143 HOH HOH . 
E 5 HOH A 2 502 117 HOH HOH . 
E 5 HOH A 3 503 112 HOH HOH . 
E 5 HOH A 4 504 44 HOH HOH . 
E 5 HOH A 5 505 107 HOH HOH . 
E 5 HOH A 6 506 74 HOH HOH . 
E 5 HOH A 7 507 51 HOH HOH . 
E 5 HOH A 8 508 176 HOH HOH . 
E 5 HOH A 9 509 4 HOH HOH . 
E 5 HOH A 10 510 110 HOH HOH . 
E 5 HOH A 11 511 30 HOH HOH . 
E 5 HOH A 12 512 69 HOH HOH . 
E 5 HOH A 13 513 32 HOH HOH . 
E 5 HOH A 14 514 184 HOH HOH . 
E 5 HOH A 15 515 85 HOH HOH . 
E 5 HOH A 16 516 55 HOH HOH . 
E 5 HOH A 17 517 90 HOH HOH . 
E 5 HOH A 18 518 41 HOH HOH . 
E 5 HOH A 19 519 72 HOH HOH . 
E 5 HOH A 20 520 10 HOH HOH . 
E 5 HOH A 21 521 180 HOH HOH . 
E 5 HOH A 22 522 152 HOH HOH . 
E 5 HOH A 23 523 200 HOH HOH . 
E 5 HOH A 24 524 6 HOH HOH . 
E 5 HOH A 25 525 115 HOH HOH . 
E 5 HOH A 26 526 116 HOH HOH . 
E 5 HOH A 27 527 64 HOH HOH . 
E 5 HOH A 28 528 174 HOH HOH . 
E 5 HOH A 29 529 151 HOH HOH . 
E 5 HOH A 30 530 159 HOH HOH . 
E 5 HOH A 31 531 101 HOH HOH . 
E 5 HOH A 32 532 183 HOH HOH . 
E 5 HOH A 33 533 109 HOH HOH . 
E 5 HOH A 34 534 2 HOH HOH . 
E 5 HOH A 35 535 158 HOH HOH . 
E 5 HOH A 36 536 104 HOH HOH . 
E 5 HOH A 37 537 155 HOH HOH . 
E 5 HOH A 38 538 167 HOH HOH . 
E 5 HOH A 39 539 54 HOH HOH . 
E 5 HOH A 40 540 190 HOH HOH . 
E 5 HOH A 41 541 186 HOH HOH . 
E 5 HOH A 42 542 197 HOH HOH . 
E 5 HOH A 43 543 198 HOH HOH . 
E 5 HOH A 44 544 145 HOH HOH . 
E 5 HOH A 45 545 199 HOH HOH . 
E 5 HOH A 46 546 108 HOH HOH . 
E 5 HOH A 47 547 127 HOH HOH . 
E 5 HOH A 48 548 136 HOH HOH . 
E 5 HOH A 49 549 146 HOH HOH . 
E 5 HOH A 50 550 111 HOH HOH . 
E 5 HOH A 51 551 1 HOH HOH . 
E 5 HOH A 52 552 3 HOH HOH . 
E 5 HOH A 53 553 5 HOH HOH . 
E 5 HOH A 54 554 7 HOH HOH . 
E 5 HOH A 55 555 8 HOH HOH . 
E 5 HOH A 56 556 9 HOH HOH . 
E 5 HOH A 57 557 11 HOH HOH . 
E 5 HOH A 58 558 12 HOH HOH . 
E 5 HOH A 59 559 13 HOH HOH . 
E 5 HOH A 60 560 14 HOH HOH . 
E 5 HOH A 61 561 15 HOH HOH . 
E 5 HOH A 62 562 16 HOH HOH . 
E 5 HOH A 63 563 17 HOH HOH . 
E 5 HOH A 64 564 18 HOH HOH . 
E 5 HOH A 65 565 19 HOH HOH . 
E 5 HOH A 66 566 20 HOH HOH . 
E 5 HOH A 67 567 21 HOH HOH . 
E 5 HOH A 68 568 22 HOH HOH . 
E 5 HOH A 69 569 23 HOH HOH . 
E 5 HOH A 70 570 24 HOH HOH . 
E 5 HOH A 71 571 25 HOH HOH . 
E 5 HOH A 72 572 26 HOH HOH . 
E 5 HOH A 73 573 27 HOH HOH . 
E 5 HOH A 74 574 28 HOH HOH . 
E 5 HOH A 75 575 29 HOH HOH . 
E 5 HOH A 76 576 31 HOH HOH . 
E 5 HOH A 77 577 33 HOH HOH . 
E 5 HOH A 78 578 34 HOH HOH . 
E 5 HOH A 79 579 35 HOH HOH . 
E 5 HOH A 80 580 36 HOH HOH . 
E 5 HOH A 81 581 37 HOH HOH . 
E 5 HOH A 82 582 38 HOH HOH . 
E 5 HOH A 83 583 39 HOH HOH . 
E 5 HOH A 84 584 40 HOH HOH . 
E 5 HOH A 85 585 42 HOH HOH . 
E 5 HOH A 86 586 43 HOH HOH . 
E 5 HOH A 87 587 45 HOH HOH . 
E 5 HOH A 88 588 46 HOH HOH . 
E 5 HOH A 89 589 47 HOH HOH . 
E 5 HOH A 90 590 48 HOH HOH . 
E 5 HOH A 91 591 49 HOH HOH . 
E 5 HOH A 92 592 50 HOH HOH . 
E 5 HOH A 93 593 52 HOH HOH . 
E 5 HOH A 94 594 53 HOH HOH . 
E 5 HOH A 95 595 56 HOH HOH . 
E 5 HOH A 96 596 57 HOH HOH . 
E 5 HOH A 97 597 58 HOH HOH . 
E 5 HOH A 98 598 59 HOH HOH . 
E 5 HOH A 99 599 60 HOH HOH . 
E 5 HOH A 100 600 61 HOH HOH . 
E 5 HOH A 101 601 62 HOH HOH . 
E 5 HOH A 102 602 63 HOH HOH . 
E 5 HOH A 103 603 65 HOH HOH . 
E 5 HOH A 104 604 66 HOH HOH . 
E 5 HOH A 105 605 67 HOH HOH . 
E 5 HOH A 106 606 68 HOH HOH . 
E 5 HOH A 107 607 70 HOH HOH . 
E 5 HOH A 108 608 71 HOH HOH . 
E 5 HOH A 109 609 73 HOH HOH . 
E 5 HOH A 110 610 75 HOH HOH . 
E 5 HOH A 111 611 76 HOH HOH . 
E 5 HOH A 112 612 77 HOH HOH . 
E 5 HOH A 113 613 78 HOH HOH . 
E 5 HOH A 114 614 79 HOH HOH . 
E 5 HOH A 115 615 80 HOH HOH . 
E 5 HOH A 116 616 81 HOH HOH . 
E 5 HOH A 117 617 82 HOH HOH . 
E 5 HOH A 118 618 83 HOH HOH . 
E 5 HOH A 119 619 84 HOH HOH . 
E 5 HOH A 120 620 86 HOH HOH . 
E 5 HOH A 121 621 87 HOH HOH . 
E 5 HOH A 122 622 88 HOH HOH . 
E 5 HOH A 123 623 89 HOH HOH . 
E 5 HOH A 124 624 91 HOH HOH . 
E 5 HOH A 125 625 92 HOH HOH . 
E 5 HOH A 126 626 93 HOH HOH . 
E 5 HOH A 127 627 94 HOH HOH . 
E 5 HOH A 128 628 95 HOH HOH . 
E 5 HOH A 129 629 96 HOH HOH . 
E 5 HOH A 130 630 97 HOH HOH . 
E 5 HOH A 131 631 98 HOH HOH . 
E 5 HOH A 132 632 99 HOH HOH . 
E 5 HOH A 133 633 100 HOH HOH . 
E 5 HOH A 134 634 102 HOH HOH . 
E 5 HOH A 135 635 103 HOH HOH . 
E 5 HOH A 136 636 105 HOH HOH . 
E 5 HOH A 137 637 106 HOH HOH . 
E 5 HOH A 138 638 113 HOH HOH . 
E 5 HOH A 139 639 114 HOH HOH . 
E 5 HOH A 140 640 118 HOH HOH . 
E 5 HOH A 141 641 119 HOH HOH . 
E 5 HOH A 142 642 120 HOH HOH . 
E 5 HOH A 143 643 121 HOH HOH . 
E 5 HOH A 144 644 122 HOH HOH . 
E 5 HOH A 145 645 123 HOH HOH . 
E 5 HOH A 146 646 124 HOH HOH . 
E 5 HOH A 147 647 125 HOH HOH . 
E 5 HOH A 148 648 126 HOH HOH . 
E 5 HOH A 149 649 128 HOH HOH . 
E 5 HOH A 150 650 129 HOH HOH . 
E 5 HOH A 151 651 130 HOH HOH . 
E 5 HOH A 152 652 131 HOH HOH . 
E 5 HOH A 153 653 132 HOH HOH . 
E 5 HOH A 154 654 133 HOH HOH . 
E 5 HOH A 155 655 134 HOH HOH . 
E 5 HOH A 156 656 135 HOH HOH . 
E 5 HOH A 157 657 137 HOH HOH . 
E 5 HOH A 158 658 138 HOH HOH . 
E 5 HOH A 159 659 139 HOH HOH . 
E 5 HOH A 160 660 140 HOH HOH . 
E 5 HOH A 161 661 141 HOH HOH . 
E 5 HOH A 162 662 142 HOH HOH . 
E 5 HOH A 163 663 144 HOH HOH . 
E 5 HOH A 164 664 148 HOH HOH . 
E 5 HOH A 165 665 149 HOH HOH . 
E 5 HOH A 166 666 150 HOH HOH . 
E 5 HOH A 167 667 153 HOH HOH . 
E 5 HOH A 168 668 154 HOH HOH . 
E 5 HOH A 169 669 156 HOH HOH . 
E 5 HOH A 170 670 157 HOH HOH . 
E 5 HOH A 171 671 160 HOH HOH . 
E 5 HOH A 172 672 161 HOH HOH . 
E 5 HOH A 173 673 162 HOH HOH . 
E 5 HOH A 174 674 163 HOH HOH . 
E 5 HOH A 175 675 164 HOH HOH . 
E 5 HOH A 176 676 165 HOH HOH . 
E 5 HOH A 177 677 166 HOH HOH . 
E 5 HOH A 178 678 168 HOH HOH . 
E 5 HOH A 179 679 169 HOH HOH . 
E 5 HOH A 180 680 170 HOH HOH . 
E 5 HOH A 181 681 171 HOH HOH . 
E 5 HOH A 182 682 172 HOH HOH . 
E 5 HOH A 183 683 173 HOH HOH . 
E 5 HOH A 184 684 175 HOH HOH . 
E 5 HOH A 185 685 177 HOH HOH . 
E 5 HOH A 186 686 178 HOH HOH . 
E 5 HOH A 187 687 179 HOH HOH . 
E 5 HOH A 188 688 181 HOH HOH . 
E 5 HOH A 189 689 182 HOH HOH . 
E 5 HOH A 190 690 185 HOH HOH . 
E 5 HOH A 191 691 187 HOH HOH . 
E 5 HOH A 192 692 188 HOH HOH . 
E 5 HOH A 193 693 189 HOH HOH . 
E 5 HOH A 194 694 191 HOH HOH . 
E 5 HOH A 195 695 192 HOH HOH . 
E 5 HOH A 196 696 193 HOH HOH . 
E 5 HOH A 197 697 194 HOH HOH . 
E 5 HOH A 198 698 195 HOH HOH . 
E 5 HOH A 199 699 196 HOH HOH . 
E 5 HOH A 200 700 201 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 40.217 -24.283 -20.032 0.5 49.42 ? C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . D 4 39.394 -23.138 -20.282 0.5 56.95 ? O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . D 4 41.349 -24.007 -19.046 0.5 43.97 ? C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . D 4 42.546 -23.899 -19.774 0.5 43.73 ? O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . D 4 41.109 -22.712 -18.269 0.5 49.49 ? C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . D 4 39.803 -22.624 -17.683 0.5 56.29 ? O3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#