data_4TTN # _model_server_result.job_id dz_wUu6AkbuNNmTASv5m2g _model_server_result.datetime_utc '2025-07-09 09:52:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ttn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 4TTN # _exptl.entry_id 4TTN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 93.8 _cell.angle_beta 106.59 _cell.angle_gamma 99.91 _cell.entry_id 4TTN _cell.length_a 22.186 _cell.length_b 25.923 _cell.length_c 37.713 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TTN _symmetry.cell_setting ? _symmetry.Int_Tables_number 2 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P -1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D 1 1 B,C,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 5 1_555 A SG CYS 19 A CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 9 A CYS 9 1_555 A SG CYS 21 A CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 14 A CYS 14 1_555 A SG CYS 26 A CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 B SG DCY 5 B DCY 5 1_555 B SG DCY 19 B DCY 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 B SG DCY 9 B DCY 9 1_555 B SG DCY 21 B DCY 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 B SG DCY 14 B DCY 14 1_555 B SG DCY 26 B DCY 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A N GLY 1 A GLY 1 1_555 A C ASN 29 A ASN 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 sing covale ? covale2 B C GLY 1 B GLY 1 1_555 B N DLE 2 B DLE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B N GLY 1 B GLY 1 1_555 B C DSG 29 B DSG 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale4 B C DLE 2 B DLE 2 1_555 B N DPR 3 B DPR 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale5 B C DPR 3 B DPR 3 1_555 B N DVA 4 B DVA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 B C DVA 4 B DVA 4 1_555 B N DCY 5 B DCY 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 B C DCY 5 B DCY 5 1_555 B N GLY 6 B GLY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 B C GLY 6 B GLY 6 1_555 B N DGL 7 B DGL 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 B C DGL 7 B DGL 7 1_555 B N DTH 8 B DTH 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 B C DTH 8 B DTH 8 1_555 B N DCY 9 B DCY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 B C DCY 9 B DCY 9 1_555 B N DVA 10 B DVA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 B C DVA 10 B DVA 10 1_555 B N GLY 11 B GLY 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale13 B C GLY 12 B GLY 12 1_555 B N DTH 13 B DTH 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale14 B C DTH 13 B DTH 13 1_555 B N DCY 14 B DCY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale15 B C DCY 14 B DCY 14 1_555 B N DSG 15 B DSG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 B C DSG 15 B DSG 15 1_555 B N DTH 16 B DTH 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale17 B C DTH 16 B DTH 16 1_555 B N DPR 17 B DPR 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale18 B C DPR 17 B DPR 17 1_555 B N GLY 18 B GLY 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 B C GLY 18 B GLY 18 1_555 B N DCY 19 B DCY 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale20 B C DCY 19 B DCY 19 1_555 B N DTH 20 B DTH 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale21 B C DTH 20 B DTH 20 1_555 B N DCY 21 B DCY 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale22 B C DCY 21 B DCY 21 1_555 B N DSN 22 B DSN 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale23 B C DSN 22 B DSN 22 1_555 B N DTR 23 B DTR 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale24 B C DTR 23 B DTR 23 1_555 B N DPR 24 B DPR 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale25 B C DPR 24 B DPR 24 1_555 B N DVA 25 B DVA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale26 B C DVA 25 B DVA 25 1_555 B N DCY 26 B DCY 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale27 B C DCY 26 B DCY 26 1_555 B N DTH 27 B DTH 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale28 B C DTH 27 B DTH 27 1_555 B N DAR 28 B DAR 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale29 B C DAR 28 B DAR 28 1_555 B N DSG 29 B DSG 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 304 n n C1 H11 MPD sing 305 n n C1 H12 MPD sing 306 n n C1 H13 MPD sing 307 n n C2 O2 MPD sing 308 n n C2 CM MPD sing 309 n n C2 C3 MPD sing 310 n n O2 HO2 MPD sing 311 n n CM HM1 MPD sing 312 n n CM HM2 MPD sing 313 n n CM HM3 MPD sing 314 n n C3 C4 MPD sing 315 n n C3 H31 MPD sing 316 n n C3 H32 MPD sing 317 n n C4 O4 MPD sing 318 n n C4 C5 MPD sing 319 n n C4 H4 MPD sing 320 n n O4 HO4 MPD sing 321 n n C5 H51 MPD sing 322 n n C5 H52 MPD sing 323 n n C5 H53 MPD sing 324 n n # _atom_sites.entry_id 4TTN _atom_sites.fract_transf_matrix[1][1] 0.045073 _atom_sites.fract_transf_matrix[1][2] 0.007871 _atom_sites.fract_transf_matrix[1][3] 0.0145 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.039159 _atom_sites.fract_transf_matrix[2][3] 0.004822 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MPD B 1 101 1 MPD MPD . D 4 HOH A 1 101 56 HOH HOH . D 4 HOH A 2 102 23 HOH HOH . D 4 HOH A 3 103 30 HOH HOH . D 4 HOH A 4 104 42 HOH HOH . D 4 HOH A 5 105 45 HOH HOH . D 4 HOH A 6 106 26 HOH HOH . D 4 HOH A 7 107 40 HOH HOH . D 4 HOH A 8 108 31 HOH HOH . D 4 HOH A 9 109 53 HOH HOH . D 4 HOH A 10 110 34 HOH HOH . D 4 HOH A 11 111 46 HOH HOH . D 4 HOH A 12 112 22 HOH HOH . D 4 HOH A 13 113 18 HOH HOH . D 4 HOH A 14 114 33 HOH HOH . D 4 HOH A 15 115 24 HOH HOH . D 4 HOH A 16 116 62 HOH HOH . D 4 HOH A 17 117 19 HOH HOH . D 4 HOH A 18 118 38 HOH HOH . D 4 HOH A 19 119 48 HOH HOH . D 4 HOH A 20 120 36 HOH HOH . D 4 HOH A 21 121 10 HOH HOH . D 4 HOH A 22 122 43 HOH HOH . D 4 HOH A 23 123 59 HOH HOH . D 4 HOH A 24 124 1 HOH HOH . D 4 HOH A 25 125 3 HOH HOH . D 4 HOH A 26 126 6 HOH HOH . D 4 HOH A 27 127 9 HOH HOH . D 4 HOH A 28 128 15 HOH HOH . D 4 HOH A 29 129 20 HOH HOH . D 4 HOH A 30 130 29 HOH HOH . D 4 HOH A 31 131 41 HOH HOH . D 4 HOH A 32 132 55 HOH HOH . E 4 HOH B 1 201 39 HOH HOH . E 4 HOH B 2 202 58 HOH HOH . E 4 HOH B 3 203 51 HOH HOH . E 4 HOH B 4 204 16 HOH HOH . E 4 HOH B 5 205 2 HOH HOH . E 4 HOH B 6 206 4 HOH HOH . E 4 HOH B 7 207 5 HOH HOH . E 4 HOH B 8 208 25 HOH HOH . E 4 HOH B 9 209 21 HOH HOH . E 4 HOH B 10 210 35 HOH HOH . E 4 HOH B 11 211 17 HOH HOH . E 4 HOH B 12 212 47 HOH HOH . E 4 HOH B 13 213 13 HOH HOH . E 4 HOH B 14 214 54 HOH HOH . E 4 HOH B 15 215 14 HOH HOH . E 4 HOH B 16 216 60 HOH HOH . E 4 HOH B 17 217 49 HOH HOH . E 4 HOH B 18 218 7 HOH HOH . E 4 HOH B 19 219 8 HOH HOH . E 4 HOH B 20 220 11 HOH HOH . E 4 HOH B 21 221 12 HOH HOH . E 4 HOH B 22 222 27 HOH HOH . E 4 HOH B 23 223 28 HOH HOH . E 4 HOH B 24 224 32 HOH HOH . E 4 HOH B 25 225 37 HOH HOH . E 4 HOH B 26 226 44 HOH HOH . E 4 HOH B 27 227 50 HOH HOH . E 4 HOH B 28 228 52 HOH HOH . E 4 HOH B 29 229 57 HOH HOH . E 4 HOH B 30 230 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 3 -5.686 2.012 90.89 1 29.8 ? C1 MPD 101 B 1 HETATM 2 C C2 MPD . . . C 3 -6.661 2.448 91.97 1 31.8 ? C2 MPD 101 B 1 HETATM 3 O O2 MPD . . . C 3 -7.697 3.255 91.357 1 35.54 ? O2 MPD 101 B 1 HETATM 4 C CM MPD . . . C 3 -7.305 1.203 92.562 1 27.51 ? CM MPD 101 B 1 HETATM 5 C C3 MPD . . . C 3 -5.984 3.267 93.07 1 33.63 ? C3 MPD 101 B 1 HETATM 6 C C4 MPD . . . C 3 -4.474 3.061 93.181 1 31.64 ? C4 MPD 101 B 1 HETATM 7 O O4 MPD . . . C 3 -3.782 3.97 92.353 1 38.64 ? O4 MPD 101 B 1 HETATM 8 C C5 MPD . . . C 3 -4.016 3.279 94.619 1 26.6 ? C5 MPD 101 B 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 49 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 366 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #