data_4TU7 # _model_server_result.job_id Z_gM4Oco5qMekfjwoPS9DQ _model_server_result.datetime_utc '2024-11-22 14:39:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4tu7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 4TU7 # _exptl.entry_id 4TU7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.105 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIETHYLENE DIOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.6 _cell.angle_gamma 90 _cell.entry_id 4TU7 _cell.length_a 164.432 _cell.length_b 37.361 _cell.length_c 100.192 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TU7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O3' DU 4 P DU 4 1_555 C P BRU 5 P BRU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? covale ? covale2 C O3' BRU 5 P BRU 5 1_555 C P DU 6 P DU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? covale ? covale3 D O3' DU 4 E DU 4 1_555 D P BRU 5 E BRU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale4 D O3' BRU 5 E BRU 5 1_555 D P DU 6 E DU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? # _chem_comp.formula 'C4 H8 O2' _chem_comp.formula_weight 88.105 _chem_comp.id DIO _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIETHYLENE DIOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C1' DIO sing 255 n n C1 O1 DIO sing 256 n n C1 H11 DIO sing 257 n n C1 H12 DIO sing 258 n n C2 C2' DIO sing 259 n n C2 O1 DIO sing 260 n n C2 H21 DIO sing 261 n n C2 H22 DIO sing 262 n n C1' O1' DIO sing 263 n n C1' "H1'1" DIO sing 264 n n C1' "H1'2" DIO sing 265 n n C2' O1' DIO sing 266 n n C2' "H2'1" DIO sing 267 n n C2' "H2'2" DIO sing 268 n n # _atom_sites.entry_id 4TU7 _atom_sites.fract_transf_matrix[1][1] 0.006082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004354 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026766 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012275 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 DIO A 1 401 401 DIO DIO . F 3 DIO A 1 402 402 DIO DIO . G 4 SO4 A 1 403 403 SO4 SO4 . H 4 SO4 A 1 404 405 SO4 SO4 . I 4 SO4 A 1 405 406 SO4 SO4 . J 5 GOL A 1 406 407 GOL GOL . K 5 GOL A 1 407 408 GOL GOL . L 5 GOL A 1 408 409 GOL GOL . M 3 DIO B 1 401 401 DIO DIO . N 3 DIO B 1 402 402 DIO DIO . O 6 CPQ B 1 403 404 CPQ CPQ . P 4 SO4 B 1 404 405 SO4 SO4 . Q 4 SO4 B 1 405 406 SO4 SO4 . R 4 SO4 B 1 406 407 SO4 SO4 . S 5 GOL B 1 407 408 GOL GOL . T 7 HOH A 1 501 158 HOH HOH . T 7 HOH A 2 502 175 HOH HOH . T 7 HOH A 3 503 174 HOH HOH . T 7 HOH A 4 504 47 HOH HOH . T 7 HOH A 5 505 120 HOH HOH . T 7 HOH A 6 506 126 HOH HOH . T 7 HOH A 7 507 49 HOH HOH . T 7 HOH A 8 508 131 HOH HOH . T 7 HOH A 9 509 66 HOH HOH . T 7 HOH A 10 510 100 HOH HOH . T 7 HOH A 11 511 69 HOH HOH . T 7 HOH A 12 512 10 HOH HOH . T 7 HOH A 13 513 128 HOH HOH . T 7 HOH A 14 514 155 HOH HOH . T 7 HOH A 15 515 7 HOH HOH . T 7 HOH A 16 516 214 HOH HOH . T 7 HOH A 17 517 80 HOH HOH . T 7 HOH A 18 518 48 HOH HOH . T 7 HOH A 19 519 85 HOH HOH . T 7 HOH A 20 520 91 HOH HOH . T 7 HOH A 21 521 73 HOH HOH . T 7 HOH A 22 522 123 HOH HOH . T 7 HOH A 23 523 57 HOH HOH . T 7 HOH A 24 524 95 HOH HOH . T 7 HOH A 25 525 97 HOH HOH . T 7 HOH A 26 526 122 HOH HOH . T 7 HOH A 27 527 9 HOH HOH . T 7 HOH A 28 528 102 HOH HOH . T 7 HOH A 29 529 132 HOH HOH . T 7 HOH A 30 530 76 HOH HOH . T 7 HOH A 31 531 153 HOH HOH . T 7 HOH A 32 532 14 HOH HOH . T 7 HOH A 33 533 213 HOH HOH . T 7 HOH A 34 534 79 HOH HOH . T 7 HOH A 35 535 58 HOH HOH . T 7 HOH A 36 536 208 HOH HOH . T 7 HOH A 37 537 116 HOH HOH . T 7 HOH A 38 538 35 HOH HOH . T 7 HOH A 39 539 237 HOH HOH . T 7 HOH A 40 540 60 HOH HOH . T 7 HOH A 41 541 118 HOH HOH . T 7 HOH A 42 542 81 HOH HOH . T 7 HOH A 43 543 43 HOH HOH . T 7 HOH A 44 544 109 HOH HOH . T 7 HOH A 45 545 16 HOH HOH . T 7 HOH A 46 546 194 HOH HOH . T 7 HOH A 47 547 170 HOH HOH . T 7 HOH A 48 548 236 HOH HOH . T 7 HOH A 49 549 246 HOH HOH . T 7 HOH A 50 550 125 HOH HOH . T 7 HOH A 51 551 161 HOH HOH . T 7 HOH A 52 552 191 HOH HOH . T 7 HOH A 53 553 130 HOH HOH . T 7 HOH A 54 554 211 HOH HOH . T 7 HOH A 55 555 182 HOH HOH . T 7 HOH A 56 556 164 HOH HOH . T 7 HOH A 57 557 154 HOH HOH . T 7 HOH A 58 558 3 HOH HOH . T 7 HOH A 59 559 6 HOH HOH . T 7 HOH A 60 560 8 HOH HOH . T 7 HOH A 61 561 15 HOH HOH . T 7 HOH A 62 562 22 HOH HOH . T 7 HOH A 63 563 28 HOH HOH . T 7 HOH A 64 564 29 HOH HOH . T 7 HOH A 65 565 31 HOH HOH . T 7 HOH A 66 566 38 HOH HOH . T 7 HOH A 67 567 39 HOH HOH . T 7 HOH A 68 568 42 HOH HOH . T 7 HOH A 69 569 44 HOH HOH . T 7 HOH A 70 570 45 HOH HOH . T 7 HOH A 71 571 46 HOH HOH . T 7 HOH A 72 572 51 HOH HOH . T 7 HOH A 73 573 52 HOH HOH . T 7 HOH A 74 574 55 HOH HOH . T 7 HOH A 75 575 56 HOH HOH . T 7 HOH A 76 576 59 HOH HOH . T 7 HOH A 77 577 64 HOH HOH . T 7 HOH A 78 578 65 HOH HOH . T 7 HOH A 79 579 67 HOH HOH . T 7 HOH A 80 580 68 HOH HOH . T 7 HOH A 81 581 70 HOH HOH . T 7 HOH A 82 582 72 HOH HOH . T 7 HOH A 83 583 75 HOH HOH . T 7 HOH A 84 584 87 HOH HOH . T 7 HOH A 85 585 92 HOH HOH . T 7 HOH A 86 586 103 HOH HOH . T 7 HOH A 87 587 104 HOH HOH . T 7 HOH A 88 588 105 HOH HOH . T 7 HOH A 89 589 106 HOH HOH . T 7 HOH A 90 590 110 HOH HOH . T 7 HOH A 91 591 113 HOH HOH . T 7 HOH A 92 592 114 HOH HOH . T 7 HOH A 93 593 117 HOH HOH . T 7 HOH A 94 594 119 HOH HOH . T 7 HOH A 95 595 121 HOH HOH . T 7 HOH A 96 596 124 HOH HOH . T 7 HOH A 97 597 127 HOH HOH . T 7 HOH A 98 598 129 HOH HOH . T 7 HOH A 99 599 133 HOH HOH . T 7 HOH A 100 600 149 HOH HOH . T 7 HOH A 101 601 156 HOH HOH . T 7 HOH A 102 602 159 HOH HOH . T 7 HOH A 103 603 162 HOH HOH . T 7 HOH A 104 604 163 HOH HOH . T 7 HOH A 105 605 173 HOH HOH . T 7 HOH A 106 606 176 HOH HOH . T 7 HOH A 107 607 183 HOH HOH . T 7 HOH A 108 608 185 HOH HOH . T 7 HOH A 109 609 187 HOH HOH . T 7 HOH A 110 610 188 HOH HOH . T 7 HOH A 111 611 195 HOH HOH . T 7 HOH A 112 612 198 HOH HOH . T 7 HOH A 113 613 199 HOH HOH . T 7 HOH A 114 614 200 HOH HOH . T 7 HOH A 115 615 201 HOH HOH . T 7 HOH A 116 616 203 HOH HOH . T 7 HOH A 117 617 204 HOH HOH . T 7 HOH A 118 618 209 HOH HOH . T 7 HOH A 119 619 210 HOH HOH . T 7 HOH A 120 620 212 HOH HOH . T 7 HOH A 121 621 218 HOH HOH . T 7 HOH A 122 622 226 HOH HOH . T 7 HOH A 123 623 229 HOH HOH . T 7 HOH A 124 624 231 HOH HOH . T 7 HOH A 125 625 234 HOH HOH . T 7 HOH A 126 626 235 HOH HOH . T 7 HOH A 127 627 239 HOH HOH . T 7 HOH A 128 628 245 HOH HOH . T 7 HOH A 129 629 248 HOH HOH . T 7 HOH A 130 630 250 HOH HOH . T 7 HOH A 131 631 253 HOH HOH . U 7 HOH B 1 501 180 HOH HOH . U 7 HOH B 2 502 189 HOH HOH . U 7 HOH B 3 503 172 HOH HOH . U 7 HOH B 4 504 140 HOH HOH . U 7 HOH B 5 505 166 HOH HOH . U 7 HOH B 6 506 143 HOH HOH . U 7 HOH B 7 507 136 HOH HOH . U 7 HOH B 8 508 62 HOH HOH . U 7 HOH B 9 509 196 HOH HOH . U 7 HOH B 10 510 137 HOH HOH . U 7 HOH B 11 511 138 HOH HOH . U 7 HOH B 12 512 242 HOH HOH . U 7 HOH B 13 513 82 HOH HOH . U 7 HOH B 14 514 63 HOH HOH . U 7 HOH B 15 515 36 HOH HOH . U 7 HOH B 16 516 98 HOH HOH . U 7 HOH B 17 517 244 HOH HOH . U 7 HOH B 18 518 251 HOH HOH . U 7 HOH B 19 519 206 HOH HOH . U 7 HOH B 20 520 228 HOH HOH . U 7 HOH B 21 521 223 HOH HOH . U 7 HOH B 22 522 171 HOH HOH . U 7 HOH B 23 523 184 HOH HOH . U 7 HOH B 24 524 205 HOH HOH . U 7 HOH B 25 525 11 HOH HOH . U 7 HOH B 26 526 13 HOH HOH . U 7 HOH B 27 527 17 HOH HOH . U 7 HOH B 28 528 18 HOH HOH . U 7 HOH B 29 529 19 HOH HOH . U 7 HOH B 30 530 20 HOH HOH . U 7 HOH B 31 531 21 HOH HOH . U 7 HOH B 32 532 23 HOH HOH . U 7 HOH B 33 533 25 HOH HOH . U 7 HOH B 34 534 27 HOH HOH . U 7 HOH B 35 535 30 HOH HOH . U 7 HOH B 36 536 32 HOH HOH . U 7 HOH B 37 537 33 HOH HOH . U 7 HOH B 38 538 34 HOH HOH . U 7 HOH B 39 539 37 HOH HOH . U 7 HOH B 40 540 40 HOH HOH . U 7 HOH B 41 541 41 HOH HOH . U 7 HOH B 42 542 54 HOH HOH . U 7 HOH B 43 543 61 HOH HOH . U 7 HOH B 44 544 71 HOH HOH . U 7 HOH B 45 545 74 HOH HOH . U 7 HOH B 46 546 78 HOH HOH . U 7 HOH B 47 547 84 HOH HOH . U 7 HOH B 48 548 86 HOH HOH . U 7 HOH B 49 549 89 HOH HOH . U 7 HOH B 50 550 93 HOH HOH . U 7 HOH B 51 551 94 HOH HOH . U 7 HOH B 52 552 96 HOH HOH . U 7 HOH B 53 553 107 HOH HOH . U 7 HOH B 54 554 111 HOH HOH . U 7 HOH B 55 555 112 HOH HOH . U 7 HOH B 56 556 134 HOH HOH . U 7 HOH B 57 557 135 HOH HOH . U 7 HOH B 58 558 139 HOH HOH . U 7 HOH B 59 559 141 HOH HOH . U 7 HOH B 60 560 142 HOH HOH . U 7 HOH B 61 561 144 HOH HOH . U 7 HOH B 62 562 145 HOH HOH . U 7 HOH B 63 563 146 HOH HOH . U 7 HOH B 64 564 147 HOH HOH . U 7 HOH B 65 565 152 HOH HOH . U 7 HOH B 66 566 157 HOH HOH . U 7 HOH B 67 567 160 HOH HOH . U 7 HOH B 68 568 165 HOH HOH . U 7 HOH B 69 569 167 HOH HOH . U 7 HOH B 70 570 168 HOH HOH . U 7 HOH B 71 571 169 HOH HOH . U 7 HOH B 72 572 178 HOH HOH . U 7 HOH B 73 573 179 HOH HOH . U 7 HOH B 74 574 181 HOH HOH . U 7 HOH B 75 575 190 HOH HOH . U 7 HOH B 76 576 192 HOH HOH . U 7 HOH B 77 577 193 HOH HOH . U 7 HOH B 78 578 197 HOH HOH . U 7 HOH B 79 579 207 HOH HOH . U 7 HOH B 80 580 215 HOH HOH . U 7 HOH B 81 581 216 HOH HOH . U 7 HOH B 82 582 217 HOH HOH . U 7 HOH B 83 583 219 HOH HOH . U 7 HOH B 84 584 220 HOH HOH . U 7 HOH B 85 585 224 HOH HOH . U 7 HOH B 86 586 225 HOH HOH . U 7 HOH B 87 587 230 HOH HOH . U 7 HOH B 88 588 232 HOH HOH . U 7 HOH B 89 589 233 HOH HOH . U 7 HOH B 90 590 240 HOH HOH . U 7 HOH B 91 591 243 HOH HOH . U 7 HOH B 92 592 247 HOH HOH . U 7 HOH B 93 593 249 HOH HOH . U 7 HOH B 94 594 254 HOH HOH . U 7 HOH B 95 595 255 HOH HOH . V 7 HOH P 1 101 1 HOH HOH . V 7 HOH P 2 102 4 HOH HOH . V 7 HOH P 3 103 24 HOH HOH . V 7 HOH P 4 104 26 HOH HOH . V 7 HOH P 5 105 83 HOH HOH . V 7 HOH P 6 106 90 HOH HOH . V 7 HOH P 7 107 99 HOH HOH . V 7 HOH P 8 108 148 HOH HOH . V 7 HOH P 9 109 150 HOH HOH . V 7 HOH P 10 110 227 HOH HOH . V 7 HOH P 11 111 238 HOH HOH . V 7 HOH P 12 112 241 HOH HOH . V 7 HOH P 13 113 252 HOH HOH . W 7 HOH E 1 101 101 HOH HOH . W 7 HOH E 2 102 12 HOH HOH . W 7 HOH E 3 103 5 HOH HOH . W 7 HOH E 4 104 151 HOH HOH . W 7 HOH E 5 105 50 HOH HOH . W 7 HOH E 6 106 2 HOH HOH . W 7 HOH E 7 107 53 HOH HOH . W 7 HOH E 8 108 77 HOH HOH . W 7 HOH E 9 109 88 HOH HOH . W 7 HOH E 10 110 222 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DIO . . . E 3 -39.514 15.866 15.205 1 71.54 ? C1 DIO 401 A 1 HETATM 2 C C2 DIO . . . E 3 -40.431 13.82 15.254 1 72.06 ? C2 DIO 401 A 1 HETATM 3 C C1' DIO . . . E 3 -39.305 15.806 16.687 1 68.32 ? C1' DIO 401 A 1 HETATM 4 C C2' DIO . . . E 3 -40.237 13.757 16.738 1 63.33 ? C2' DIO 401 A 1 HETATM 5 O O1 DIO . . . E 3 -40.624 15.127 14.841 1 77.22 ? O1 DIO 401 A 1 HETATM 6 O O1' DIO . . . E 3 -40.276 15.026 17.291 1 74.04 ? O1' DIO 401 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #