data_4TUV # _model_server_result.job_id tvwYqUhlsngYgHz5HZuDTw _model_server_result.datetime_utc '2024-11-13 17:38:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4tuv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4TUV # _exptl.entry_id 4TUV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4TUV _cell.length_a 165.8 _cell.length_b 165.8 _cell.length_c 75.86 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TUV _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 317 A CYS 317 1_555 B FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc2 B FE HEM . A HEM 401 1_555 C N1 CPZ . A CPZ 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 149 n n CHA C4D HEM doub 150 n n CHA HHA HEM sing 151 n n CHB C4A HEM sing 152 n n CHB C1B HEM doub 153 n n CHB HHB HEM sing 154 n n CHC C4B HEM sing 155 n n CHC C1C HEM doub 156 n n CHC HHC HEM sing 157 n n CHD C4C HEM doub 158 n n CHD C1D HEM sing 159 n n CHD HHD HEM sing 160 n n C1A C2A HEM doub 161 n y C1A NA HEM sing 162 n y C2A C3A HEM sing 163 n y C2A CAA HEM sing 164 n n C3A C4A HEM doub 165 n y C3A CMA HEM sing 166 n n C4A NA HEM sing 167 n y CMA HMA HEM sing 168 n n CMA HMAA HEM sing 169 n n CMA HMAB HEM sing 170 n n CAA CBA HEM sing 171 n n CAA HAA HEM sing 172 n n CAA HAAA HEM sing 173 n n CBA CGA HEM sing 174 n n CBA HBA HEM sing 175 n n CBA HBAA HEM sing 176 n n CGA O1A HEM doub 177 n n CGA O2A HEM sing 178 n n C1B C2B HEM sing 179 n n C1B NB HEM sing 180 n n C2B C3B HEM doub 181 n n C2B CMB HEM sing 182 n n C3B C4B HEM sing 183 n n C3B CAB HEM sing 184 n n C4B NB HEM doub 185 n n CMB HMB HEM sing 186 n n CMB HMBA HEM sing 187 n n CMB HMBB HEM sing 188 n n CAB CBB HEM doub 189 n n CAB HAB HEM sing 190 n n CBB HBB HEM sing 191 n n CBB HBBA HEM sing 192 n n C1C C2C HEM sing 193 n y C1C NC HEM sing 194 n y C2C C3C HEM doub 195 n y C2C CMC HEM sing 196 n n C3C C4C HEM sing 197 n y C3C CAC HEM sing 198 n n C4C NC HEM sing 199 n y CMC HMC HEM sing 200 n n CMC HMCA HEM sing 201 n n CMC HMCB HEM sing 202 n n CAC CBC HEM doub 203 n n CAC HAC HEM sing 204 n n CBC HBC HEM sing 205 n n CBC HBCA HEM sing 206 n n C1D C2D HEM sing 207 n n C1D ND HEM doub 208 n n C2D C3D HEM doub 209 n n C2D CMD HEM sing 210 n n C3D C4D HEM sing 211 n n C3D CAD HEM sing 212 n n C4D ND HEM sing 213 n n CMD HMD HEM sing 214 n n CMD HMDA HEM sing 215 n n CMD HMDB HEM sing 216 n n CAD CBD HEM sing 217 n n CAD HAD HEM sing 218 n n CAD HADA HEM sing 219 n n CBD CGD HEM sing 220 n n CBD HBD HEM sing 221 n n CBD HBDA HEM sing 222 n n CGD O1D HEM doub 223 n n CGD O2D HEM sing 224 n n O2A H2A HEM sing 225 n n O2D H2D HEM sing 226 n n FE NA HEM sing 227 n n FE NB HEM sing 228 n n FE NC HEM sing 229 n n FE ND HEM sing 230 n n # _atom_sites.entry_id 4TUV _atom_sites.fract_transf_matrix[1][1] 0.006031 _atom_sites.fract_transf_matrix[1][2] 0.003482 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006964 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013182 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 401 410 HEM HEM . C 3 CPZ A 1 402 500 CPZ CPZ . D 4 HOH A 1 501 68 HOH HOH . D 4 HOH A 2 502 33 HOH HOH . D 4 HOH A 3 503 36 HOH HOH . D 4 HOH A 4 504 4 HOH HOH . D 4 HOH A 5 505 59 HOH HOH . D 4 HOH A 6 506 29 HOH HOH . D 4 HOH A 7 507 1 HOH HOH . D 4 HOH A 8 508 73 HOH HOH . D 4 HOH A 9 509 71 HOH HOH . D 4 HOH A 10 510 66 HOH HOH . D 4 HOH A 11 511 65 HOH HOH . D 4 HOH A 12 512 51 HOH HOH . D 4 HOH A 13 513 63 HOH HOH . D 4 HOH A 14 514 67 HOH HOH . D 4 HOH A 15 515 62 HOH HOH . D 4 HOH A 16 516 61 HOH HOH . D 4 HOH A 17 517 58 HOH HOH . D 4 HOH A 18 518 2 HOH HOH . D 4 HOH A 19 519 3 HOH HOH . D 4 HOH A 20 520 5 HOH HOH . D 4 HOH A 21 521 6 HOH HOH . D 4 HOH A 22 522 7 HOH HOH . D 4 HOH A 23 523 8 HOH HOH . D 4 HOH A 24 524 9 HOH HOH . D 4 HOH A 25 525 10 HOH HOH . D 4 HOH A 26 526 11 HOH HOH . D 4 HOH A 27 527 12 HOH HOH . D 4 HOH A 28 528 13 HOH HOH . D 4 HOH A 29 529 14 HOH HOH . D 4 HOH A 30 530 15 HOH HOH . D 4 HOH A 31 531 16 HOH HOH . D 4 HOH A 32 532 17 HOH HOH . D 4 HOH A 33 533 18 HOH HOH . D 4 HOH A 34 534 19 HOH HOH . D 4 HOH A 35 535 20 HOH HOH . D 4 HOH A 36 536 21 HOH HOH . D 4 HOH A 37 537 22 HOH HOH . D 4 HOH A 38 538 23 HOH HOH . D 4 HOH A 39 539 24 HOH HOH . D 4 HOH A 40 540 25 HOH HOH . D 4 HOH A 41 541 26 HOH HOH . D 4 HOH A 42 542 28 HOH HOH . D 4 HOH A 43 543 30 HOH HOH . D 4 HOH A 44 544 32 HOH HOH . D 4 HOH A 45 545 34 HOH HOH . D 4 HOH A 46 546 35 HOH HOH . D 4 HOH A 47 547 37 HOH HOH . D 4 HOH A 48 548 38 HOH HOH . D 4 HOH A 49 549 39 HOH HOH . D 4 HOH A 50 550 40 HOH HOH . D 4 HOH A 51 551 41 HOH HOH . D 4 HOH A 52 552 42 HOH HOH . D 4 HOH A 53 553 43 HOH HOH . D 4 HOH A 54 554 44 HOH HOH . D 4 HOH A 55 555 45 HOH HOH . D 4 HOH A 56 556 47 HOH HOH . D 4 HOH A 57 557 48 HOH HOH . D 4 HOH A 58 558 49 HOH HOH . D 4 HOH A 59 559 53 HOH HOH . D 4 HOH A 60 560 54 HOH HOH . D 4 HOH A 61 561 55 HOH HOH . D 4 HOH A 62 562 57 HOH HOH . D 4 HOH A 63 563 60 HOH HOH . D 4 HOH A 64 564 69 HOH HOH . D 4 HOH A 65 565 70 HOH HOH . D 4 HOH A 66 566 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHB HEM . . . B 2 -15.143 -55.314 -7.672 1 44.11 ? CHB HEM 401 A 1 HETATM 2 C CHC HEM . . . B 2 -13.969 -58.118 -3.92 1 39.47 ? CHC HEM 401 A 1 HETATM 3 C CHD HEM . . . B 2 -18.213 -60.339 -4.474 1 36.72 ? CHD HEM 401 A 1 HETATM 4 C C1A HEM . . . B 2 -18.577 -56.141 -7.893 1 34.29 ? C1A HEM 401 A 1 HETATM 5 C C2A HEM . . . B 2 -18.494 -55.087 -8.871 1 39.17 ? C2A HEM 401 A 1 HETATM 6 C C3A HEM . . . B 2 -17.226 -54.681 -8.89 1 40.05 ? C3A HEM 401 A 1 HETATM 7 C C4A HEM . . . B 2 -16.484 -55.469 -7.926 1 39.28 ? C4A HEM 401 A 1 HETATM 8 C CMA HEM . . . B 2 -16.633 -53.576 -9.777 1 34.44 ? CMA HEM 401 A 1 HETATM 9 C CAA HEM . . . B 2 -19.662 -54.548 -9.725 1 33.97 ? CAA HEM 401 A 1 HETATM 10 C CBA HEM . . . B 2 -20.042 -55.535 -10.828 1 30.66 ? CBA HEM 401 A 1 HETATM 11 C CGA HEM . . . B 2 -21.178 -54.973 -11.645 1 37.77 ? CGA HEM 401 A 1 HETATM 12 O O1A HEM . . . B 2 -21.676 -53.865 -11.318 1 41.44 ? O1A HEM 401 A 1 HETATM 13 O O2A HEM . . . B 2 -21.593 -55.624 -12.637 1 42.19 ? O2A HEM 401 A 1 HETATM 14 C C1B HEM . . . B 2 -14.443 -55.888 -6.645 1 39.62 ? C1B HEM 401 A 1 HETATM 15 C C2B HEM . . . B 2 -13.084 -55.552 -6.27 1 39.62 ? C2B HEM 401 A 1 HETATM 16 C C3B HEM . . . B 2 -12.76 -56.348 -5.239 1 37.37 ? C3B HEM 401 A 1 HETATM 17 C C4B HEM . . . B 2 -13.902 -57.186 -4.934 1 37.52 ? C4B HEM 401 A 1 HETATM 18 C CMB HEM . . . B 2 -12.219 -54.482 -6.982 1 35.84 ? CMB HEM 401 A 1 HETATM 19 C CAB HEM . . . B 2 -11.45 -56.408 -4.429 1 38.08 ? CAB HEM 401 A 1 HETATM 20 C CBB HEM . . . B 2 -10.524 -55.443 -4.458 1 45.45 ? CBB HEM 401 A 1 HETATM 21 C C1C HEM . . . B 2 -15.035 -58.953 -3.711 1 39.89 ? C1C HEM 401 A 1 HETATM 22 C C2C HEM . . . B 2 -15.181 -59.935 -2.646 1 38.93 ? C2C HEM 401 A 1 HETATM 23 C C3C HEM . . . B 2 -16.375 -60.531 -2.834 1 36.09 ? C3C HEM 401 A 1 HETATM 24 C C4C HEM . . . B 2 -16.991 -59.958 -4.004 1 36.11 ? C4C HEM 401 A 1 HETATM 25 C CMC HEM . . . B 2 -14.154 -60.207 -1.517 1 36.57 ? CMC HEM 401 A 1 HETATM 26 C CAC HEM . . . B 2 -17.087 -61.663 -2.06 1 33.28 ? CAC HEM 401 A 1 HETATM 27 C CBC HEM . . . B 2 -16.497 -62.516 -1.226 1 39.65 ? CBC HEM 401 A 1 HETATM 28 C C1D HEM . . . B 2 -19.065 -59.615 -5.263 1 33.9 ? C1D HEM 401 A 1 HETATM 29 C C2D HEM . . . B 2 -20.473 -59.901 -5.433 1 34.41 ? C2D HEM 401 A 1 HETATM 30 C C3D HEM . . . B 2 -20.956 -58.992 -6.276 1 38.28 ? C3D HEM 401 A 1 HETATM 31 C C4D HEM . . . B 2 -19.883 -58.124 -6.674 1 36.98 ? C4D HEM 401 A 1 HETATM 32 C CMD HEM . . . B 2 -21.288 -61.026 -4.755 1 32.96 ? CMD HEM 401 A 1 HETATM 33 C CAD HEM . . . B 2 -22.393 -58.858 -6.767 1 31.37 ? CAD HEM 401 A 1 HETATM 34 C CBD HEM . . . B 2 -23.081 -57.767 -5.955 1 32.34 ? CBD HEM 401 A 1 HETATM 35 C CGD HEM . . . B 2 -24.474 -57.536 -6.512 1 35.58 ? CGD HEM 401 A 1 HETATM 36 O O1D HEM . . . B 2 -24.803 -58.039 -7.62 1 34.74 ? O1D HEM 401 A 1 HETATM 37 O O2D HEM . . . B 2 -25.267 -56.833 -5.851 1 38 ? O2D HEM 401 A 1 HETATM 38 N NA HEM . . . B 2 -17.337 -56.362 -7.322 1 31.33 ? NA HEM 401 A 1 HETATM 39 N NB HEM . . . B 2 -14.918 -56.881 -5.818 1 36.34 ? NB HEM 401 A 1 HETATM 40 N NC HEM . . . B 2 -16.158 -59.001 -4.531 1 38.02 ? NC HEM 401 A 1 HETATM 41 N ND HEM . . . B 2 -18.719 -58.527 -6.044 1 36.71 ? ND HEM 401 A 1 HETATM 42 FE FE HEM . . . B 2 -16.799 -57.682 -5.83 1 37.26 ? FE HEM 401 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 42 #