data_4TV3
#
_model_server_result.job_id            Q1ku6W8eui-xodXcA-D1lQ 
_model_server_result.datetime_utc      '2024-11-04 23:28:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4tv3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1101}' 
#
_entry.id    4TV3 
#
_exptl.entry_id    4TV3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              425.481 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-amino-8-[trans-4-(2-hydroxyethoxy)cyclohexyl]-6-(6-methoxypyridin-3-yl)-4-methylpyrido[2,3-d]pyrimidin-7(8H)-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4TV3 
_cell.length_a            58.038 
_cell.length_b            136.773 
_cell.length_c            142.644 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4TV3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C22 H27 N5 O4' 
_chem_comp.formula_weight    425.481 
_chem_comp.id                ML9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-amino-8-[trans-4-(2-hydroxyethoxy)cyclohexyl]-6-(6-methoxypyridin-3-yl)-4-methylpyrido[2,3-d]pyrimidin-7(8H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C13 C14 ML9 doub 237 n y 
C14 C15 ML9 sing 238 n y 
C14 H14 ML9 sing 239 n n 
C16 C15 ML9 doub 240 n y 
C15 H15 ML9 sing 241 n n 
C18 N17 ML9 doub 242 n y 
C18 C13 ML9 sing 243 n y 
C18 H18 ML9 sing 244 n n 
C9 C13 ML9 sing 245 n n 
C6 C5 ML9 doub 246 n y 
C5 C4 ML9 sing 247 n y 
C5 C10 ML9 sing 248 n n 
C21 C6 ML9 sing 249 n n 
N1 C6 ML9 sing 250 n y 
N3 C4 ML9 doub 251 n y 
C4 N7 ML9 sing 252 n n 
N17 C16 ML9 sing 253 n y 
C16 O19 ML9 sing 254 n n 
N12 C2 ML9 sing 255 n n 
N1 C2 ML9 doub 256 n y 
C2 N3 ML9 sing 257 n y 
C10 C9 ML9 doub 258 n n 
C10 H10 ML9 sing 259 n n 
C9 C8 ML9 sing 260 n n 
N7 C8 ML9 sing 261 n n 
C8 O11 ML9 doub 262 n n 
C23 C22 ML9 sing 263 n n 
C23 C24 ML9 sing 264 n n 
C23 H23 ML9 sing 265 n n 
C23 H23A ML9 sing 266 n n 
C22 C27 ML9 sing 267 n n 
C27 C26 ML9 sing 268 n n 
C27 H27 ML9 sing 269 n n 
C27 H27A ML9 sing 270 n n 
C24 C25 ML9 sing 271 n n 
C24 H24 ML9 sing 272 n n 
C24 H24A ML9 sing 273 n n 
C25 C26 ML9 sing 274 n n 
C26 H26 ML9 sing 275 n n 
C26 H26A ML9 sing 276 n n 
N7 C22 ML9 sing 277 n n 
C22 H22 ML9 sing 278 n n 
C25 O28 ML9 sing 279 n n 
C25 H25 ML9 sing 280 n n 
C21 H21 ML9 sing 281 n n 
C21 H21A ML9 sing 282 n n 
C21 H21B ML9 sing 283 n n 
C20 O19 ML9 sing 284 n n 
C20 H20 ML9 sing 285 n n 
C20 H20A ML9 sing 286 n n 
C20 H20B ML9 sing 287 n n 
O31 C30 ML9 sing 288 n n 
C29 C30 ML9 sing 289 n n 
C30 H30 ML9 sing 290 n n 
C30 H30A ML9 sing 291 n n 
O28 C29 ML9 sing 292 n n 
C29 H29 ML9 sing 293 n n 
C29 H29A ML9 sing 294 n n 
N12 HN12 ML9 sing 295 n n 
N12 HN1A ML9 sing 296 n n 
O31 HO31 ML9 sing 297 n n 
#
_atom_sites.entry_id                     4TV3 
_atom_sites.fract_transf_matrix[1][1]    0.01723 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007311 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00701 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ML9 A 1 1101 1101 ML9 ML9 . 
C 3 HOH A 1 1201 1201 HOH HOH . 
C 3 HOH A 2 1202 1202 HOH HOH . 
C 3 HOH A 3 1203 1203 HOH HOH . 
C 3 HOH A 4 1204 1204 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C14 ML9 . . . B 2 -16.277 6.794 26.943 1 62.26 ? C14 ML9 1101 A 1 
HETATM 2 C C15 ML9 . . . B 2 -15.898 5.644 26.285 1 62.01 ? C15 ML9 1101 A 1 
HETATM 3 C C18 ML9 . . . B 2 -14.868 8.031 25.488 1 67 ? C18 ML9 1101 A 1 
HETATM 4 C C13 ML9 . . . B 2 -15.764 8.027 26.554 1 66.46 ? C13 ML9 1101 A 1 
HETATM 5 C C5 ML9 . . . B 2 -15.546 11.446 28.18 1 68.93 ? C5 ML9 1101 A 1 
HETATM 6 C C6 ML9 . . . B 2 -14.617 12.473 28.433 1 67.93 ? C6 ML9 1101 A 1 
HETATM 7 C C4 ML9 . . . B 2 -16.882 11.649 28.65 1 70.47 ? C4 ML9 1101 A 1 
HETATM 8 C C16 ML9 . . . B 2 -14.994 5.772 25.235 1 64.49 ? C16 ML9 1101 A 1 
HETATM 9 C C2 ML9 . . . B 2 -16.293 13.683 29.499 1 69.52 ? C2 ML9 1101 A 1 
HETATM 10 C C10 ML9 . . . B 2 -15.273 10.224 27.5 1 67.62 ? C10 ML9 1101 A 1 
HETATM 11 C C9 ML9 . . . B 2 -16.178 9.263 27.274 1 68.57 ? C9 ML9 1101 A 1 
HETATM 12 C C8 ML9 . . . B 2 -17.564 9.436 27.742 1 70.71 ? C8 ML9 1101 A 1 
HETATM 13 C C23 ML9 . . . B 2 -20.225 11.309 27.861 1 80.29 ? C23 ML9 1101 A 1 
HETATM 14 C C27 ML9 . . . B 2 -19.72 9.969 29.971 1 80.43 ? C27 ML9 1101 A 1 
HETATM 15 C C24 ML9 . . . B 2 -21.573 11.718 28.475 1 82.49 ? C24 ML9 1101 A 1 
HETATM 16 C C26 ML9 . . . B 2 -21.06 10.417 30.561 1 82.19 ? C26 ML9 1101 A 1 
HETATM 17 C C22 ML9 . . . B 2 -19.204 10.995 28.958 1 78.19 ? C22 ML9 1101 A 1 
HETATM 18 C C25 ML9 . . . B 2 -22.077 10.689 29.471 1 84.2 ? C25 ML9 1101 A 1 
HETATM 19 C C21 ML9 . . . B 2 -13.18 12.422 28.009 1 66.3 ? C21 ML9 1101 A 1 
HETATM 20 C C20 ML9 . . . B 2 -13.738 4.669 23.547 1 63.77 ? C20 ML9 1101 A 1 
HETATM 21 C C30 ML9 . . . B 2 -25.037 9.625 29.089 1 95.2 ? C30 ML9 1101 A 1 
HETATM 22 C C29 ML9 . . . B 2 -24.287 10.092 30.311 1 91.49 ? C29 ML9 1101 A 1 
HETATM 23 N N17 ML9 . . . B 2 -14.479 6.925 24.828 1 67.17 ? N17 ML9 1101 A 1 
HETATM 24 N N1 ML9 . . . B 2 -15.009 13.576 29.09 1 68.27 ? N1 ML9 1101 A 1 
HETATM 25 N N3 ML9 . . . B 2 -17.26 12.757 29.305 1 70.01 ? N3 ML9 1101 A 1 
HETATM 26 N N7 ML9 . . . B 2 -17.847 10.672 28.432 1 72.74 ? N7 ML9 1101 A 1 
HETATM 27 N N12 ML9 . . . B 2 -16.637 14.8 30.151 1 69.96 ? N12 ML9 1101 A 1 
HETATM 28 O O11 ML9 . . . B 2 -18.442 8.596 27.567 1 71.15 ? O11 ML9 1101 A 1 
HETATM 29 O O31 ML9 . . . B 2 -25.499 10.713 28.296 1 97.25 ? O31 ML9 1101 A 1 
HETATM 30 O O19 ML9 . . . B 2 -14.659 4.615 24.631 1 63.5 ? O19 ML9 1101 A 1 
HETATM 31 O O28 ML9 . . . B 2 -23.319 11.115 30.048 1 87.4 ? O28 ML9 1101 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#