data_4TVH # _model_server_result.job_id U0umhbsjSQq0gpqKCpl3JA _model_server_result.datetime_utc '2024-11-17 05:56:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4tvh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":200}' # _entry.id 4TVH # _exptl.entry_id 4TVH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 909.077 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment TL-3 _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4TVH _cell.length_a 28.916 _cell.length_b 66.295 _cell.length_c 92.175 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TVH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C50 H64 N6 O10' _chem_comp.formula_weight 909.077 _chem_comp.id 3TL _chem_comp.mon_nstd_flag . _chem_comp.name 'benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms 'TL-3, C2 symmetric inhibitor' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C31 O8 3TL doub 1 n n C31 O9 3TL sing 2 n n C31 N4 3TL sing 3 n n O9 CA 3TL sing 4 n n CA C 3TL sing 5 n n CA HA1 3TL sing 6 n n CA HA2 3TL sing 7 n n C C13 3TL doub 8 n y C C17 3TL sing 9 n y C13 C14 3TL sing 10 n y C13 H13 3TL sing 11 n n C14 C15 3TL doub 12 n y C14 H14 3TL sing 13 n n C15 C16 3TL sing 14 n y C15 H15 3TL sing 15 n n C16 C17 3TL doub 16 n y C16 H16 3TL sing 17 n n C17 H17 3TL sing 18 n n N4 C18 3TL sing 19 n n N4 HN4 3TL sing 20 n n C18 C19 3TL sing 21 n n C18 C20 3TL sing 22 n n C18 H18 3TL sing 23 n n C19 O4 3TL doub 24 n n C19 N2 3TL sing 25 n n C20 H201 3TL sing 26 n n C20 H202 3TL sing 27 n n C20 H203 3TL sing 28 n n N2 C10 3TL sing 29 n n N2 HN2 3TL sing 30 n n C10 C11 3TL sing 31 n n C10 C12 3TL sing 32 n n C10 H10 3TL sing 33 n n C11 O2 3TL doub 34 n n C11 N1 3TL sing 35 n n C12 CG2 3TL sing 36 n n C12 CG1 3TL sing 37 n n C12 H12 3TL sing 38 n n CG2 HG21 3TL sing 39 n n CG2 HG22 3TL sing 40 n n CG2 HG23 3TL sing 41 n n CG1 HG11 3TL sing 42 n n CG1 HG12 3TL sing 43 n n CG1 HG13 3TL sing 44 n n C2 O1 3TL sing 45 n n C2 C1 3TL sing 46 n n C2 H2 3TL sing 47 n n C2 C52 3TL sing 48 n n O1 HO1 3TL sing 49 n n C1 N1 3TL sing 50 n n C1 C3 3TL sing 51 n n C1 H1 3TL sing 52 n n N1 HN1 3TL sing 53 n n C3 C4 3TL sing 54 n n C3 H31 3TL sing 55 n n C3 H32 3TL sing 56 n n C4 C5 3TL doub 57 n y C4 C9 3TL sing 58 n y C5 C6 3TL sing 59 n y C5 H5 3TL sing 60 n n C9 C8 3TL doub 61 n y C9 H9 3TL sing 62 n n C6 C7 3TL doub 63 n y C6 H6 3TL sing 64 n n C8 C7 3TL sing 65 n y C8 H8 3TL sing 66 n n C7 H7 3TL sing 67 n n N51 C51 3TL sing 68 n n N51 HN51 3TL sing 69 n n N51 C61 3TL sing 70 n n C51 C52 3TL sing 71 n n C51 C53 3TL sing 72 n n C51 H51 3TL sing 73 n n C52 O51 3TL sing 74 n n C52 H52 3TL sing 75 n n O51 HO51 3TL sing 76 n n C53 C54 3TL sing 77 n n C53 H531 3TL sing 78 n n C53 H532 3TL sing 79 n n C54 C55 3TL doub 80 n y C54 C59 3TL sing 81 n y C55 C56 3TL sing 82 n y C55 H55 3TL sing 83 n n C59 C58 3TL doub 84 n y C59 H59 3TL sing 85 n n C56 C57 3TL doub 86 n y C56 H56 3TL sing 87 n n C58 C57 3TL sing 88 n y C58 H58 3TL sing 89 n n C57 H57 3TL sing 90 n n N52 C60 3TL sing 91 n n N52 HN52 3TL sing 92 n n N52 C69 3TL sing 93 n n C60 C61 3TL sing 94 n n C60 C62 3TL sing 95 n n C60 H60 3TL sing 96 n n C61 O52 3TL doub 97 n n C62 CG6 3TL sing 98 n n C62 CG5 3TL sing 99 n n C62 H62 3TL sing 100 n n CG6 HG61 3TL sing 101 n n CG6 HG62 3TL sing 102 n n CG6 HG63 3TL sing 103 n n CG5 HG51 3TL sing 104 n n CG5 HG52 3TL sing 105 n n CG5 HG53 3TL sing 106 n n N54 C68 3TL sing 107 n n N54 HN54 3TL sing 108 n n N54 C81 3TL sing 109 n n C68 C69 3TL sing 110 n n C68 C70 3TL sing 111 n n C68 H68 3TL sing 112 n n C69 O54 3TL doub 113 n n C70 H701 3TL sing 114 n n C70 H702 3TL sing 115 n n C70 H703 3TL sing 116 n n C81 O58 3TL doub 117 n n C81 O59 3TL sing 118 n n O59 CA5 3TL sing 119 n n CA5 C50 3TL sing 120 n n CA5 HA51 3TL sing 121 n n CA5 HA52 3TL sing 122 n n C50 C63 3TL doub 123 n y C50 C67 3TL sing 124 n y C63 C64 3TL sing 125 n y C63 H63 3TL sing 126 n n C64 C65 3TL doub 127 n y C64 H64 3TL sing 128 n n C65 C66 3TL sing 129 n y C65 H65 3TL sing 130 n n C66 C67 3TL doub 131 n y C66 H66 3TL sing 132 n n C67 H67 3TL sing 133 n n # _atom_sites.entry_id 4TVH _atom_sites.fract_transf_matrix[1][1] 0.034583 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015084 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010849 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3TL A 1 200 200 3TL 3TL . D 3 BME B 1 101 2 BME BME . E 4 K97 B 1 102 4 K97 K97 . F 5 HOH A 1 301 8 HOH HOH . F 5 HOH A 2 302 39 HOH HOH . F 5 HOH A 3 303 47 HOH HOH . F 5 HOH A 4 304 46 HOH HOH . F 5 HOH A 5 305 35 HOH HOH . F 5 HOH A 6 306 32 HOH HOH . F 5 HOH A 7 307 49 HOH HOH . F 5 HOH A 8 308 31 HOH HOH . F 5 HOH A 9 309 60 HOH HOH . F 5 HOH A 10 310 40 HOH HOH . F 5 HOH A 11 311 58 HOH HOH . F 5 HOH A 12 312 14 HOH HOH . F 5 HOH A 13 313 50 HOH HOH . F 5 HOH A 14 314 48 HOH HOH . F 5 HOH A 15 315 10 HOH HOH . F 5 HOH A 16 316 3 HOH HOH . F 5 HOH A 17 317 6 HOH HOH . F 5 HOH A 18 318 9 HOH HOH . F 5 HOH A 19 319 12 HOH HOH . F 5 HOH A 20 320 13 HOH HOH . F 5 HOH A 21 321 16 HOH HOH . F 5 HOH A 22 322 22 HOH HOH . F 5 HOH A 23 323 24 HOH HOH . F 5 HOH A 24 324 26 HOH HOH . F 5 HOH A 25 325 30 HOH HOH . F 5 HOH A 26 326 33 HOH HOH . F 5 HOH A 27 327 37 HOH HOH . F 5 HOH A 28 328 41 HOH HOH . F 5 HOH A 29 329 44 HOH HOH . F 5 HOH A 30 330 45 HOH HOH . F 5 HOH A 31 331 53 HOH HOH . F 5 HOH A 32 332 54 HOH HOH . F 5 HOH A 33 333 55 HOH HOH . G 5 HOH B 1 201 1 HOH HOH . G 5 HOH B 2 202 23 HOH HOH . G 5 HOH B 3 203 17 HOH HOH . G 5 HOH B 4 204 7 HOH HOH . G 5 HOH B 5 205 29 HOH HOH . G 5 HOH B 6 206 5 HOH HOH . G 5 HOH B 7 207 57 HOH HOH . G 5 HOH B 8 208 20 HOH HOH . G 5 HOH B 9 209 51 HOH HOH . G 5 HOH B 10 210 43 HOH HOH . G 5 HOH B 11 211 38 HOH HOH . G 5 HOH B 12 212 56 HOH HOH . G 5 HOH B 13 213 1 HOH HOH . G 5 HOH B 14 214 11 HOH HOH . G 5 HOH B 15 215 15 HOH HOH . G 5 HOH B 16 216 18 HOH HOH . G 5 HOH B 17 217 19 HOH HOH . G 5 HOH B 18 218 21 HOH HOH . G 5 HOH B 19 219 25 HOH HOH . G 5 HOH B 20 220 27 HOH HOH . G 5 HOH B 21 221 28 HOH HOH . G 5 HOH B 22 222 34 HOH HOH . G 5 HOH B 23 223 36 HOH HOH . G 5 HOH B 24 224 42 HOH HOH . G 5 HOH B 25 225 52 HOH HOH . G 5 HOH B 26 226 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C31 3TL . . . C 2 -20.53 -11.066 11.871 1 18.92 ? C31 3TL 200 A 1 HETATM 2 O O8 3TL . . . C 2 -21.764 -10.349 11.93 1 20.82 ? O8 3TL 200 A 1 HETATM 3 O O9 3TL . . . C 2 -20.551 -12.305 11.16 1 20.41 ? O9 3TL 200 A 1 HETATM 4 C CA 3TL . . . C 2 -21.871 -12.659 10.645 1 20.06 ? CA 3TL 200 A 1 HETATM 5 C C 3TL . . . C 2 -21.846 -13.977 9.849 1 19.13 ? C 3TL 200 A 1 HETATM 6 C C13 3TL . . . C 2 -22.814 -14.077 8.671 1 18.97 ? C13 3TL 200 A 1 HETATM 7 C C14 3TL . . . C 2 -22.71 -15.322 7.796 1 18.89 ? C14 3TL 200 A 1 HETATM 8 C C15 3TL . . . C 2 -21.4 -16.066 7.654 1 19 ? C15 3TL 200 A 1 HETATM 9 C C16 3TL . . . C 2 -20.404 -15.924 8.784 1 19.4 ? C16 3TL 200 A 1 HETATM 10 C C17 3TL . . . C 2 -20.562 -14.783 9.799 1 18.54 ? C17 3TL 200 A 1 HETATM 11 N N4 3TL . . . C 2 -19.278 -10.742 12.586 1 17.57 ? N4 3TL 200 A 1 HETATM 12 C C18 3TL . . . C 2 -19.138 -9.58 13.529 1 18.41 ? C18 3TL 200 A 1 HETATM 13 C C19 3TL . . . C 2 -17.866 -8.989 12.86 1 16.63 ? C19 3TL 200 A 1 HETATM 14 O O4 3TL . . . C 2 -17.506 -7.705 13.24 1 17.4 ? O4 3TL 200 A 1 HETATM 15 C C20 3TL . . . C 2 -19.165 -10.602 14.685 1 18.18 ? C20 3TL 200 A 1 HETATM 16 N N2 3TL . . . C 2 -17.014 -9.777 11.972 1 16.76 ? N2 3TL 200 A 1 HETATM 17 C C10 3TL . . . C 2 -15.53 -9.628 11.782 1 16.54 ? C10 3TL 200 A 1 HETATM 18 C C11 3TL . . . C 2 -15.16 -9.493 10.331 1 16.75 ? C11 3TL 200 A 1 HETATM 19 O O2 3TL . . . C 2 -14.347 -10.533 9.798 1 16.84 ? O2 3TL 200 A 1 HETATM 20 C C12 3TL . . . C 2 -14.436 -9.635 12.878 1 16.05 ? C12 3TL 200 A 1 HETATM 21 C CG2 3TL . . . C 2 -14.892 -9.364 14.29 1 15.52 ? CG2 3TL 200 A 1 HETATM 22 C CG1 3TL . . . C 2 -13.157 -8.897 12.487 1 16.49 ? CG1 3TL 200 A 1 HETATM 23 C C2 3TL . . . C 2 -14.682 -6.797 7.826 1 20.17 ? C2 3TL 200 A 1 HETATM 24 O O1 3TL . . . C 2 -15.663 -5.938 8.434 1 22.36 ? O1 3TL 200 A 1 HETATM 25 C C1 3TL . . . C 2 -15.251 -8.182 8.074 1 20.2 ? C1 3TL 200 A 1 HETATM 26 N N1 3TL . . . C 2 -15.591 -8.318 9.532 1 19.23 ? N1 3TL 200 A 1 HETATM 27 C C3 3TL . . . C 2 -16.509 -8.195 7.215 1 21.84 ? C3 3TL 200 A 1 HETATM 28 C C4 3TL . . . C 2 -17.205 -9.507 7.463 1 23.62 ? C4 3TL 200 A 1 HETATM 29 C C5 3TL . . . C 2 -17.134 -10.567 6.385 1 24.79 ? C5 3TL 200 A 1 HETATM 30 C C9 3TL . . . C 2 -18.369 -9.447 8.425 1 26.58 ? C9 3TL 200 A 1 HETATM 31 C C6 3TL . . . C 2 -17.89 -11.884 6.607 1 28.42 ? C6 3TL 200 A 1 HETATM 32 C C8 3TL . . . C 2 -19.137 -10.753 8.606 1 28.4 ? C8 3TL 200 A 1 HETATM 33 C C7 3TL . . . C 2 -18.642 -12.034 7.923 1 27.88 ? C7 3TL 200 A 1 HETATM 34 N N51 3TL . . . C 2 -11.768 -7.481 6.784 1 16.99 ? N51 3TL 200 A 1 HETATM 35 C C51 3TL . . . C 2 -12.242 -7.557 8.19 1 17.54 ? C51 3TL 200 A 1 HETATM 36 C C52 3TL . . . C 2 -13.347 -6.569 8.536 1 18.51 ? C52 3TL 200 A 1 HETATM 37 O O51 3TL . . . C 2 -12.985 -5.27 8.146 1 18.41 ? O51 3TL 200 A 1 HETATM 38 C C53 3TL . . . C 2 -11.103 -7.308 9.137 1 17.58 ? C53 3TL 200 A 1 HETATM 39 C C54 3TL . . . C 2 -9.93 -8.211 8.863 1 18.09 ? C54 3TL 200 A 1 HETATM 40 C C55 3TL . . . C 2 -8.68 -7.616 8.248 1 17.75 ? C55 3TL 200 A 1 HETATM 41 C C59 3TL . . . C 2 -9.917 -9.614 9.434 1 18.11 ? C59 3TL 200 A 1 HETATM 42 C C56 3TL . . . C 2 -7.53 -8.563 7.885 1 18.33 ? C56 3TL 200 A 1 HETATM 43 C C58 3TL . . . C 2 -8.761 -10.543 9.065 1 18.97 ? C58 3TL 200 A 1 HETATM 44 C C57 3TL . . . C 2 -7.548 -10.02 8.306 1 18.51 ? C57 3TL 200 A 1 HETATM 45 N N52 3TL . . . C 2 -10.349 -8.717 4.086 1 14.47 ? N52 3TL 200 A 1 HETATM 46 C C60 3TL . . . C 2 -11.653 -8.17 4.378 1 15.17 ? C60 3TL 200 A 1 HETATM 47 C C61 3TL . . . C 2 -11.924 -8.572 5.802 1 15.97 ? C61 3TL 200 A 1 HETATM 48 O O52 3TL . . . C 2 -12.161 -9.927 6.124 1 16.17 ? O52 3TL 200 A 1 HETATM 49 C C62 3TL . . . C 2 -12.628 -8.669 3.348 1 15.38 ? C62 3TL 200 A 1 HETATM 50 C CG6 3TL . . . C 2 -14.063 -8.155 3.539 1 16.06 ? CG6 3TL 200 A 1 HETATM 51 C CG5 3TL . . . C 2 -12.113 -8.427 1.915 1 16.02 ? CG5 3TL 200 A 1 HETATM 52 N N54 3TL . . . C 2 -7.311 -8.324 2.22 1 15.66 ? N54 3TL 200 A 1 HETATM 53 C C68 3TL . . . C 2 -7.956 -8.764 3.471 1 15.88 ? C68 3TL 200 A 1 HETATM 54 C C69 3TL . . . C 2 -9.202 -7.922 3.646 1 15.21 ? C69 3TL 200 A 1 HETATM 55 O O54 3TL . . . C 2 -9.234 -6.544 3.325 1 16.16 ? O54 3TL 200 A 1 HETATM 56 C C70 3TL . . . C 2 -6.972 -8.691 4.645 1 16.75 ? C70 3TL 200 A 1 HETATM 57 C C81 3TL . . . C 2 -7.16 -9.302 1.129 1 16.83 ? C81 3TL 200 A 1 HETATM 58 O O58 3TL . . . C 2 -7.768 -10.57 1.118 1 16.69 ? O58 3TL 200 A 1 HETATM 59 O O59 3TL . . . C 2 -6.337 -8.968 0.033 1 18.49 ? O59 3TL 200 A 1 HETATM 60 C CA5 3TL . . . C 2 -5.998 -9.951 -0.941 1 22.82 ? CA5 3TL 200 A 1 HETATM 61 C C50 3TL . . . C 2 -4.817 -10.855 -0.604 1 26.93 ? C50 3TL 200 A 1 HETATM 62 C C63 3TL . . . C 2 -4.012 -10.656 0.67 1 29.67 ? C63 3TL 200 A 1 HETATM 63 C C64 3TL . . . C 2 -3.388 -11.877 1.373 1 31.86 ? C64 3TL 200 A 1 HETATM 64 C C65 3TL . . . C 2 -3.603 -13.301 0.835 1 32.75 ? C65 3TL 200 A 1 HETATM 65 C C66 3TL . . . C 2 -4.616 -13.441 -0.291 1 30.35 ? C66 3TL 200 A 1 HETATM 66 C C67 3TL . . . C 2 -4.738 -12.239 -1.212 1 29.27 ? C67 3TL 200 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 66 #