data_4TVW # _model_server_result.job_id ffPtfQsZY72-PuDtb3rjcA _model_server_result.datetime_utc '2025-01-02 22:26:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4tvw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 4TVW # _exptl.entry_id 4TVW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 641.609 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-{[5-(7-hydroxy-3-oxo-3H-phenoxazin-2-yl)pentanoyl]sulfamoyl}adenosine" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.79 _cell.angle_gamma 90 _cell.entry_id 4TVW _cell.length_a 91.354 _cell.length_b 99.932 _cell.length_c 107.284 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TVW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E 1 1 B,F 2 1 C,G 3 1 D,H 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C27 H27 N7 O10 S' _chem_comp.formula_weight 641.609 _chem_comp.id 37P _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-{[5-(7-hydroxy-3-oxo-3H-phenoxazin-2-yl)pentanoyl]sulfamoyl}adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2S S 37P doub 1 n n S O1S 37P doub 2 n n S N45 37P sing 3 n n S O5' 37P sing 4 n n N45 C44 37P sing 5 n n O5' C5' 37P sing 6 n n O3' C3' 37P sing 7 n n C5' C4' 37P sing 8 n n C3' C4' 37P sing 9 n n C3' C2' 37P sing 10 n n C44 C43 37P sing 11 n n C44 O46 37P doub 12 n n C4' O4' 37P sing 13 n n C43 C42 37P sing 14 n n C42 C16 37P sing 15 n n C2' C1' 37P sing 16 n n C2' O2' 37P sing 17 n n C16 C15 37P sing 18 n n O4' C1' 37P sing 19 n n C1' N9A 37P sing 20 n n C4 C3 37P doub 21 n y C4 C11 37P sing 22 n y N10 C11 37P sing 23 n n N10 C9 37P doub 24 n n C14 C9 37P sing 25 n n C14 C13 37P doub 26 n n C15 C13 37P sing 27 n n C3 C2 37P sing 28 n y C11 C6 37P doub 29 n y C9 C8 37P sing 30 n n C13 C12 37P sing 31 n n N9A C8A 37P sing 32 n y N9A C4A 37P sing 33 n y C2 O15 37P sing 34 n n C2 C1 37P doub 35 n y C6 C1 37P sing 36 n y C6 O7 37P sing 37 n n C8 O7 37P sing 38 n n C8 C17 37P doub 39 n n C12 C17 37P sing 40 n n C12 O16 37P doub 41 n n C8A N7A 37P doub 42 n y N3A C4A 37P sing 43 n y N3A C2A 37P doub 44 n y C4A C5A 37P doub 45 n y C2A N1A 37P sing 46 n y N7A C5A 37P sing 47 n y C5A C6A 37P sing 48 n y N1A C6A 37P doub 49 n y C6A N6A 37P sing 50 n n C5' H1 37P sing 51 n n C5' H2 37P sing 52 n n C4' H3 37P sing 53 n n C3' H4 37P sing 54 n n O3' H5 37P sing 55 n n C2' H6 37P sing 56 n n O2' H7 37P sing 57 n n C1' H8 37P sing 58 n n C2A H9 37P sing 59 n n N6A H10 37P sing 60 n n N6A H11 37P sing 61 n n C8A H12 37P sing 62 n n N45 H13 37P sing 63 n n C43 H14 37P sing 64 n n C43 H15 37P sing 65 n n C42 H16 37P sing 66 n n C42 H17 37P sing 67 n n C16 H18 37P sing 68 n n C16 H19 37P sing 69 n n C15 H20 37P sing 70 n n C15 H21 37P sing 71 n n C17 H22 37P sing 72 n n C14 H24 37P sing 73 n n C1 H26 37P sing 74 n n O15 H27 37P sing 75 n n C3 H28 37P sing 76 n n C4 H29 37P sing 77 n n # _atom_sites.entry_id 4TVW _atom_sites.fract_transf_matrix[1][1] 0.010946 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003096 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009687 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 37P A 1 401 1 37P Rfa . F 2 37P B 1 401 1 37P Rfa . G 2 37P C 1 401 1 37P Rfa . H 2 37P D 1 401 1 37P Rfa . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2S 37P . . . G 2 65.623 -55.114 51.113 1 52.08 ? O2S 37P 401 C 1 HETATM 2 S S 37P . . . G 2 66.156 -55.339 52.412 1 55.83 ? S 37P 401 C 1 HETATM 3 O O1S 37P . . . G 2 67.418 -55.98 52.51 1 69.22 ? O1S 37P 401 C 1 HETATM 4 O O5' 37P . . . G 2 65.16 -56.203 53.183 1 53.56 ? O5' 37P 401 C 1 HETATM 5 C C5' 37P . . . G 2 65.596 -57.404 53.814 1 51.46 ? C5' 37P 401 C 1 HETATM 6 C C4' 37P . . . G 2 64.546 -57.983 54.731 1 51.8 ? C4' 37P 401 C 1 HETATM 7 C C3' 37P . . . G 2 63.099 -57.894 54.23 1 46.29 ? C3' 37P 401 C 1 HETATM 8 O O3' 37P . . . G 2 62.691 -59.15 53.703 1 55.28 ? O3' 37P 401 C 1 HETATM 9 C C2' 37P . . . G 2 62.334 -57.641 55.516 1 41.52 ? C2' 37P 401 C 1 HETATM 10 O O2' 37P . . . G 2 62.109 -58.808 56.279 1 34.57 ? O2' 37P 401 C 1 HETATM 11 C C1' 37P . . . G 2 63.299 -56.694 56.211 1 48.13 ? C1' 37P 401 C 1 HETATM 12 N N9A 37P . . . G 2 62.96 -56.409 57.63 1 50.09 ? N9A 37P 401 C 1 HETATM 13 C C4A 37P . . . G 2 63.728 -55.715 58.465 1 48.74 ? C4A 37P 401 C 1 HETATM 14 N N3A 37P . . . G 2 64.942 -55.135 58.37 1 58.04 ? N3A 37P 401 C 1 HETATM 15 C C2A 37P . . . G 2 65.484 -54.498 59.419 1 64.81 ? C2A 37P 401 C 1 HETATM 16 N N1A 37P . . . G 2 64.885 -54.384 60.617 1 63.33 ? N1A 37P 401 C 1 HETATM 17 C C6A 37P . . . G 2 63.67 -54.917 60.852 1 56.32 ? C6A 37P 401 C 1 HETATM 18 N N6A 37P . . . G 2 63.094 -54.781 62.068 1 57.79 ? N6A 37P 401 C 1 HETATM 19 C C5A 37P . . . G 2 63.005 -55.637 59.74 1 49.82 ? C5A 37P 401 C 1 HETATM 20 N N7A 37P . . . G 2 61.845 -56.287 59.55 1 52.51 ? N7A 37P 401 C 1 HETATM 21 C C8A 37P . . . G 2 61.826 -56.74 58.272 1 51 ? C8A 37P 401 C 1 HETATM 22 O O4' 37P . . . G 2 64.57 -57.265 55.997 1 47.58 ? O4' 37P 401 C 1 HETATM 23 N N45 37P . . . G 2 66.267 -53.881 53.159 1 48.65 ? N45 37P 401 C 1 HETATM 24 C C44 37P . . . G 2 66.691 -53.807 54.418 1 55.06 ? C44 37P 401 C 1 HETATM 25 O O46 37P . . . G 2 66.53 -54.713 55.218 1 51.99 ? O46 37P 401 C 1 HETATM 26 C C43 37P . . . G 2 67.396 -52.536 54.839 1 64.51 ? C43 37P 401 C 1 HETATM 27 C C42 37P . . . G 2 66.394 -51.398 55.008 1 61.78 ? C42 37P 401 C 1 HETATM 28 C C16 37P . . . G 2 66.885 -50.332 55.984 1 59.1 ? C16 37P 401 C 1 HETATM 29 C C15 37P . . . G 2 65.782 -49.93 56.959 1 52.66 ? C15 37P 401 C 1 HETATM 30 C C13 37P . . . G 2 65.923 -48.473 57.341 1 59.12 ? C13 37P 401 C 1 HETATM 31 C C12 37P . . . G 2 64.869 -47.812 58.158 1 59.32 ? C12 37P 401 C 1 HETATM 32 O O16 37P . . . G 2 63.865 -48.457 58.535 1 57.12 ? O16 37P 401 C 1 HETATM 33 C C17 37P . . . G 2 64.999 -46.473 58.506 1 60.24 ? C17 37P 401 C 1 HETATM 34 C C8 37P . . . G 2 66.111 -45.748 58.093 1 60.43 ? C8 37P 401 C 1 HETATM 35 C C9 37P . . . G 2 67.169 -46.405 57.276 1 61.69 ? C9 37P 401 C 1 HETATM 36 C C14 37P . . . G 2 67.035 -47.746 56.929 1 66.04 ? C14 37P 401 C 1 HETATM 37 O O7 37P . . . G 2 66.238 -44.429 58.437 1 65.38 ? O7 37P 401 C 1 HETATM 38 C C6 37P . . . G 2 67.339 -43.728 58.023 1 63.01 ? C6 37P 401 C 1 HETATM 39 C C11 37P . . . G 2 68.383 -44.4 57.208 1 61.27 ? C11 37P 401 C 1 HETATM 40 N N10 37P . . . G 2 68.251 -45.701 56.872 1 63.46 ? N10 37P 401 C 1 HETATM 41 C C1 37P . . . G 2 67.497 -42.388 58.354 1 65.9 ? C1 37P 401 C 1 HETATM 42 C C2 37P . . . G 2 68.623 -41.693 57.923 1 67.55 ? C2 37P 401 C 1 HETATM 43 O O15 37P . . . G 2 68.774 -40.379 58.25 1 71.93 ? O15 37P 401 C 1 HETATM 44 C C3 37P . . . G 2 69.599 -42.326 57.158 1 68.8 ? C3 37P 401 C 1 HETATM 45 C C4 37P . . . G 2 69.488 -43.666 56.8 1 66.83 ? C4 37P 401 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 45 #