data_4TW9 # _model_server_result.job_id XuAQUeLsgWae1ekyDFxSLA _model_server_result.datetime_utc '2024-10-19 16:36:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4tw9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":1005}' # _entry.id 4TW9 # _exptl.entry_id 4TW9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.42 _cell.angle_gamma 90 _cell.entry_id 4TW9 _cell.length_a 52.049 _cell.length_b 135.707 _cell.length_c 57.183 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TW9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details Dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 K N N ? 5 R N N ? 5 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 106 A LEU 106 1_555 J NA NA . A NA 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.044 ? metalc ? metalc2 B O LEU 106 B LEU 106 1_555 R NA NA . B NA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? metalc ? metalc3 R NA NA . B NA 1005 1_555 V O HOH . B HOH 1124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? metalc ? metalc4 S NA NA . B NA 1006 1_555 V O HOH . B HOH 1180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.107 ? metalc ? metalc5 S NA NA . B NA 1006 1_555 V O HOH . B HOH 1184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.134 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4TW9 _atom_sites.fract_transf_matrix[1][1] 0.019213 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003186 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007369 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017726 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1001 1001 SO4 SO4 . D 2 SO4 A 1 1002 1002 SO4 SO4 . E 2 SO4 A 1 1003 1003 SO4 SO4 . F 2 SO4 A 1 1004 1004 SO4 SO4 . G 3 HSJ A 1 1005 1006 HSJ BOG . H 4 CL A 1 1006 1007 CL CL . I 4 CL A 1 1007 1008 CL CL . J 5 NA A 1 1008 1009 NA NA . K 5 NA A 1 1009 1010 NA NA . L 6 386 A 1 1010 2001 386 4SC . M 3 HSJ A 1 1011 1006 HSJ BOG . N 2 SO4 B 1 1001 1001 SO4 SO4 . O 2 SO4 B 1 1002 1002 SO4 SO4 . P 2 SO4 B 1 1003 1003 SO4 SO4 . Q 2 SO4 B 1 1004 1004 SO4 SO4 . R 5 NA B 1 1005 1009 NA NA . S 5 NA B 1 1006 1010 NA NA . T 6 386 B 1 1007 2001 386 4SC . U 7 HOH A 1 1101 179 HOH HOH . U 7 HOH A 2 1102 2 HOH HOH . U 7 HOH A 3 1103 67 HOH HOH . U 7 HOH A 4 1104 35 HOH HOH . U 7 HOH A 5 1105 70 HOH HOH . U 7 HOH A 6 1106 10 HOH HOH . U 7 HOH A 7 1107 214 HOH HOH . U 7 HOH A 8 1108 29 HOH HOH . U 7 HOH A 9 1109 48 HOH HOH . U 7 HOH A 10 1110 57 HOH HOH . U 7 HOH A 11 1111 132 HOH HOH . U 7 HOH A 12 1112 38 HOH HOH . U 7 HOH A 13 1113 206 HOH HOH . U 7 HOH A 14 1114 220 HOH HOH . U 7 HOH A 15 1115 101 HOH HOH . U 7 HOH A 16 1116 248 HOH HOH . U 7 HOH A 17 1117 31 HOH HOH . U 7 HOH A 18 1118 183 HOH HOH . U 7 HOH A 19 1119 4 HOH HOH . U 7 HOH A 20 1120 17 HOH HOH . U 7 HOH A 21 1121 18 HOH HOH . U 7 HOH A 22 1122 19 HOH HOH . U 7 HOH A 23 1123 22 HOH HOH . U 7 HOH A 24 1124 23 HOH HOH . U 7 HOH A 25 1125 28 HOH HOH . U 7 HOH A 26 1126 32 HOH HOH . U 7 HOH A 27 1127 37 HOH HOH . U 7 HOH A 28 1128 39 HOH HOH . U 7 HOH A 29 1129 42 HOH HOH . U 7 HOH A 30 1130 50 HOH HOH . U 7 HOH A 31 1131 51 HOH HOH . U 7 HOH A 32 1132 60 HOH HOH . U 7 HOH A 33 1133 66 HOH HOH . U 7 HOH A 34 1134 71 HOH HOH . U 7 HOH A 35 1135 73 HOH HOH . U 7 HOH A 36 1136 75 HOH HOH . U 7 HOH A 37 1137 76 HOH HOH . U 7 HOH A 38 1138 78 HOH HOH . U 7 HOH A 39 1139 82 HOH HOH . U 7 HOH A 40 1140 87 HOH HOH . U 7 HOH A 41 1141 88 HOH HOH . U 7 HOH A 42 1142 89 HOH HOH . U 7 HOH A 43 1143 96 HOH HOH . U 7 HOH A 44 1144 98 HOH HOH . U 7 HOH A 45 1145 99 HOH HOH . U 7 HOH A 46 1146 100 HOH HOH . U 7 HOH A 47 1147 103 HOH HOH . U 7 HOH A 48 1148 104 HOH HOH . U 7 HOH A 49 1149 107 HOH HOH . U 7 HOH A 50 1150 109 HOH HOH . U 7 HOH A 51 1151 112 HOH HOH . U 7 HOH A 52 1152 113 HOH HOH . U 7 HOH A 53 1153 117 HOH HOH . U 7 HOH A 54 1154 123 HOH HOH . U 7 HOH A 55 1155 131 HOH HOH . U 7 HOH A 56 1156 138 HOH HOH . U 7 HOH A 57 1157 140 HOH HOH . U 7 HOH A 58 1158 142 HOH HOH . U 7 HOH A 59 1159 143 HOH HOH . U 7 HOH A 60 1160 144 HOH HOH . U 7 HOH A 61 1161 149 HOH HOH . U 7 HOH A 62 1162 151 HOH HOH . U 7 HOH A 63 1163 155 HOH HOH . U 7 HOH A 64 1164 156 HOH HOH . U 7 HOH A 65 1165 158 HOH HOH . U 7 HOH A 66 1166 159 HOH HOH . U 7 HOH A 67 1167 165 HOH HOH . U 7 HOH A 68 1168 167 HOH HOH . U 7 HOH A 69 1169 169 HOH HOH . U 7 HOH A 70 1170 172 HOH HOH . U 7 HOH A 71 1171 173 HOH HOH . U 7 HOH A 72 1172 175 HOH HOH . U 7 HOH A 73 1173 176 HOH HOH . U 7 HOH A 74 1174 177 HOH HOH . U 7 HOH A 75 1175 180 HOH HOH . U 7 HOH A 76 1176 181 HOH HOH . U 7 HOH A 77 1177 184 HOH HOH . U 7 HOH A 78 1178 185 HOH HOH . U 7 HOH A 79 1179 189 HOH HOH . U 7 HOH A 80 1180 191 HOH HOH . U 7 HOH A 81 1181 195 HOH HOH . U 7 HOH A 82 1182 197 HOH HOH . U 7 HOH A 83 1183 201 HOH HOH . U 7 HOH A 84 1184 203 HOH HOH . U 7 HOH A 85 1185 208 HOH HOH . U 7 HOH A 86 1186 209 HOH HOH . U 7 HOH A 87 1187 210 HOH HOH . U 7 HOH A 88 1188 216 HOH HOH . U 7 HOH A 89 1189 218 HOH HOH . U 7 HOH A 90 1190 219 HOH HOH . U 7 HOH A 91 1191 222 HOH HOH . U 7 HOH A 92 1192 225 HOH HOH . U 7 HOH A 93 1193 228 HOH HOH . U 7 HOH A 94 1194 230 HOH HOH . U 7 HOH A 95 1195 231 HOH HOH . U 7 HOH A 96 1196 232 HOH HOH . U 7 HOH A 97 1197 234 HOH HOH . U 7 HOH A 98 1198 235 HOH HOH . U 7 HOH A 99 1199 239 HOH HOH . U 7 HOH A 100 1200 243 HOH HOH . U 7 HOH A 101 1201 245 HOH HOH . U 7 HOH A 102 1202 246 HOH HOH . U 7 HOH A 103 1203 247 HOH HOH . U 7 HOH A 104 1204 250 HOH HOH . V 7 HOH B 1 1101 205 HOH HOH . V 7 HOH B 2 1102 157 HOH HOH . V 7 HOH B 3 1103 52 HOH HOH . V 7 HOH B 4 1104 16 HOH HOH . V 7 HOH B 5 1105 136 HOH HOH . V 7 HOH B 6 1106 40 HOH HOH . V 7 HOH B 7 1107 200 HOH HOH . V 7 HOH B 8 1108 187 HOH HOH . V 7 HOH B 9 1109 223 HOH HOH . V 7 HOH B 10 1110 118 HOH HOH . V 7 HOH B 11 1111 59 HOH HOH . V 7 HOH B 12 1112 178 HOH HOH . V 7 HOH B 13 1113 211 HOH HOH . V 7 HOH B 14 1114 68 HOH HOH . V 7 HOH B 15 1115 25 HOH HOH . V 7 HOH B 16 1116 105 HOH HOH . V 7 HOH B 17 1117 244 HOH HOH . V 7 HOH B 18 1118 27 HOH HOH . V 7 HOH B 19 1119 127 HOH HOH . V 7 HOH B 20 1120 130 HOH HOH . V 7 HOH B 21 1121 111 HOH HOH . V 7 HOH B 22 1122 114 HOH HOH . V 7 HOH B 23 1123 146 HOH HOH . V 7 HOH B 24 1124 224 HOH HOH . V 7 HOH B 25 1125 154 HOH HOH . V 7 HOH B 26 1126 11 HOH HOH . V 7 HOH B 27 1127 194 HOH HOH . V 7 HOH B 28 1128 188 HOH HOH . V 7 HOH B 29 1129 1 HOH HOH . V 7 HOH B 30 1130 3 HOH HOH . V 7 HOH B 31 1131 5 HOH HOH . V 7 HOH B 32 1132 6 HOH HOH . V 7 HOH B 33 1133 7 HOH HOH . V 7 HOH B 34 1134 8 HOH HOH . V 7 HOH B 35 1135 9 HOH HOH . V 7 HOH B 36 1136 12 HOH HOH . V 7 HOH B 37 1137 13 HOH HOH . V 7 HOH B 38 1138 15 HOH HOH . V 7 HOH B 39 1139 20 HOH HOH . V 7 HOH B 40 1140 21 HOH HOH . V 7 HOH B 41 1141 24 HOH HOH . V 7 HOH B 42 1142 26 HOH HOH . V 7 HOH B 43 1143 30 HOH HOH . V 7 HOH B 44 1144 33 HOH HOH . V 7 HOH B 45 1145 34 HOH HOH . V 7 HOH B 46 1146 36 HOH HOH . V 7 HOH B 47 1147 41 HOH HOH . V 7 HOH B 48 1148 43 HOH HOH . V 7 HOH B 49 1149 44 HOH HOH . V 7 HOH B 50 1150 45 HOH HOH . V 7 HOH B 51 1151 46 HOH HOH . V 7 HOH B 52 1152 47 HOH HOH . V 7 HOH B 53 1153 49 HOH HOH . V 7 HOH B 54 1154 53 HOH HOH . V 7 HOH B 55 1155 54 HOH HOH . V 7 HOH B 56 1156 55 HOH HOH . V 7 HOH B 57 1157 56 HOH HOH . V 7 HOH B 58 1158 58 HOH HOH . V 7 HOH B 59 1159 61 HOH HOH . V 7 HOH B 60 1160 63 HOH HOH . V 7 HOH B 61 1161 64 HOH HOH . V 7 HOH B 62 1162 65 HOH HOH . V 7 HOH B 63 1163 69 HOH HOH . V 7 HOH B 64 1164 72 HOH HOH . V 7 HOH B 65 1165 77 HOH HOH . V 7 HOH B 66 1166 79 HOH HOH . V 7 HOH B 67 1167 80 HOH HOH . V 7 HOH B 68 1168 81 HOH HOH . V 7 HOH B 69 1169 83 HOH HOH . V 7 HOH B 70 1170 84 HOH HOH . V 7 HOH B 71 1171 85 HOH HOH . V 7 HOH B 72 1172 86 HOH HOH . V 7 HOH B 73 1173 90 HOH HOH . V 7 HOH B 74 1174 91 HOH HOH . V 7 HOH B 75 1175 92 HOH HOH . V 7 HOH B 76 1176 93 HOH HOH . V 7 HOH B 77 1177 94 HOH HOH . V 7 HOH B 78 1178 95 HOH HOH . V 7 HOH B 79 1179 97 HOH HOH . V 7 HOH B 80 1180 102 HOH HOH . V 7 HOH B 81 1181 106 HOH HOH . V 7 HOH B 82 1182 108 HOH HOH . V 7 HOH B 83 1183 110 HOH HOH . V 7 HOH B 84 1184 115 HOH HOH . V 7 HOH B 85 1185 116 HOH HOH . V 7 HOH B 86 1186 119 HOH HOH . V 7 HOH B 87 1187 120 HOH HOH . V 7 HOH B 88 1188 121 HOH HOH . V 7 HOH B 89 1189 122 HOH HOH . V 7 HOH B 90 1190 124 HOH HOH . V 7 HOH B 91 1191 125 HOH HOH . V 7 HOH B 92 1192 126 HOH HOH . V 7 HOH B 93 1193 128 HOH HOH . V 7 HOH B 94 1194 129 HOH HOH . V 7 HOH B 95 1195 134 HOH HOH . V 7 HOH B 96 1196 135 HOH HOH . V 7 HOH B 97 1197 137 HOH HOH . V 7 HOH B 98 1198 141 HOH HOH . V 7 HOH B 99 1199 145 HOH HOH . V 7 HOH B 100 1200 147 HOH HOH . V 7 HOH B 101 1201 148 HOH HOH . V 7 HOH B 102 1202 150 HOH HOH . V 7 HOH B 103 1203 152 HOH HOH . V 7 HOH B 104 1204 153 HOH HOH . V 7 HOH B 105 1205 160 HOH HOH . V 7 HOH B 106 1206 163 HOH HOH . V 7 HOH B 107 1207 166 HOH HOH . V 7 HOH B 108 1208 168 HOH HOH . V 7 HOH B 109 1209 170 HOH HOH . V 7 HOH B 110 1210 182 HOH HOH . V 7 HOH B 111 1211 186 HOH HOH . V 7 HOH B 112 1212 190 HOH HOH . V 7 HOH B 113 1213 192 HOH HOH . V 7 HOH B 114 1214 196 HOH HOH . V 7 HOH B 115 1215 198 HOH HOH . V 7 HOH B 116 1216 202 HOH HOH . V 7 HOH B 117 1217 204 HOH HOH . V 7 HOH B 118 1218 207 HOH HOH . V 7 HOH B 119 1219 212 HOH HOH . V 7 HOH B 120 1220 213 HOH HOH . V 7 HOH B 121 1221 215 HOH HOH . V 7 HOH B 122 1222 217 HOH HOH . V 7 HOH B 123 1223 221 HOH HOH . V 7 HOH B 124 1224 226 HOH HOH . V 7 HOH B 125 1225 229 HOH HOH . V 7 HOH B 126 1226 233 HOH HOH . V 7 HOH B 127 1227 236 HOH HOH . V 7 HOH B 128 1228 237 HOH HOH . V 7 HOH B 129 1229 238 HOH HOH . V 7 HOH B 130 1230 242 HOH HOH . V 7 HOH B 131 1231 249 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id R _atom_site.label_entity_id 5 _atom_site.Cartn_x -0.879 _atom_site.Cartn_y -43.01 _atom_site.Cartn_z 0.409 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.68 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1005 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #