data_4TWI # _model_server_result.job_id huMuRLeBKoorzci0zn-y0Q _model_server_result.datetime_utc '2024-11-15 05:54:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4twi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 4TWI # _exptl.entry_id 4TWI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.85 _cell.angle_gamma 90 _cell.entry_id 4TWI _cell.length_a 44.61 _cell.length_b 51.362 _cell.length_c 57.687 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TWI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ALA 8 B ALA 4 1_555 B N SLL 9 B SLL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 B C SLL 9 B SLL 5 1_555 B N ARG 10 B ARG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A SG CYS 124 A CYS 124 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc2 A SG CYS 127 A CYS 127 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc3 A SG CYS 145 A CYS 145 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc4 A SG CYS 148 A CYS 148 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4TWI _atom_sites.fract_transf_matrix[1][1] 0.022416 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004702 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01947 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 301 1 ZN ZN . D 4 GOL B 1 101 1 GOL GOL . E 5 HOH A 1 401 43 HOH HOH . E 5 HOH A 2 402 161 HOH HOH . E 5 HOH A 3 403 93 HOH HOH . E 5 HOH A 4 404 67 HOH HOH . E 5 HOH A 5 405 155 HOH HOH . E 5 HOH A 6 406 51 HOH HOH . E 5 HOH A 7 407 202 HOH HOH . E 5 HOH A 8 408 177 HOH HOH . E 5 HOH A 9 409 16 HOH HOH . E 5 HOH A 10 410 17 HOH HOH . E 5 HOH A 11 411 200 HOH HOH . E 5 HOH A 12 412 61 HOH HOH . E 5 HOH A 13 413 231 HOH HOH . E 5 HOH A 14 414 64 HOH HOH . E 5 HOH A 15 415 18 HOH HOH . E 5 HOH A 16 416 40 HOH HOH . E 5 HOH A 17 417 179 HOH HOH . E 5 HOH A 18 418 28 HOH HOH . E 5 HOH A 19 419 74 HOH HOH . E 5 HOH A 20 420 136 HOH HOH . E 5 HOH A 21 421 102 HOH HOH . E 5 HOH A 22 422 38 HOH HOH . E 5 HOH A 23 423 37 HOH HOH . E 5 HOH A 24 424 184 HOH HOH . E 5 HOH A 25 425 42 HOH HOH . E 5 HOH A 26 426 215 HOH HOH . E 5 HOH A 27 427 65 HOH HOH . E 5 HOH A 28 428 121 HOH HOH . E 5 HOH A 29 429 15 HOH HOH . E 5 HOH A 30 430 157 HOH HOH . E 5 HOH A 31 431 55 HOH HOH . E 5 HOH A 32 432 20 HOH HOH . E 5 HOH A 33 433 198 HOH HOH . E 5 HOH A 34 434 173 HOH HOH . E 5 HOH A 35 435 147 HOH HOH . E 5 HOH A 36 436 95 HOH HOH . E 5 HOH A 37 437 66 HOH HOH . E 5 HOH A 38 438 176 HOH HOH . E 5 HOH A 39 439 148 HOH HOH . E 5 HOH A 40 440 101 HOH HOH . E 5 HOH A 41 441 120 HOH HOH . E 5 HOH A 42 442 44 HOH HOH . E 5 HOH A 43 443 128 HOH HOH . E 5 HOH A 44 444 21 HOH HOH . E 5 HOH A 45 445 234 HOH HOH . E 5 HOH A 46 446 172 HOH HOH . E 5 HOH A 47 447 32 HOH HOH . E 5 HOH A 48 448 19 HOH HOH . E 5 HOH A 49 449 232 HOH HOH . E 5 HOH A 50 450 210 HOH HOH . E 5 HOH A 51 451 70 HOH HOH . E 5 HOH A 52 452 171 HOH HOH . E 5 HOH A 53 453 68 HOH HOH . E 5 HOH A 54 454 211 HOH HOH . E 5 HOH A 55 455 106 HOH HOH . E 5 HOH A 56 456 94 HOH HOH . E 5 HOH A 57 457 199 HOH HOH . E 5 HOH A 58 458 165 HOH HOH . E 5 HOH A 59 459 180 HOH HOH . E 5 HOH A 60 460 182 HOH HOH . E 5 HOH A 61 461 189 HOH HOH . E 5 HOH A 62 462 163 HOH HOH . E 5 HOH A 63 463 195 HOH HOH . E 5 HOH A 64 464 109 HOH HOH . E 5 HOH A 65 465 183 HOH HOH . E 5 HOH A 66 466 39 HOH HOH . E 5 HOH A 67 467 72 HOH HOH . E 5 HOH A 68 468 218 HOH HOH . E 5 HOH A 69 469 41 HOH HOH . E 5 HOH A 70 470 25 HOH HOH . E 5 HOH A 71 471 26 HOH HOH . E 5 HOH A 72 472 54 HOH HOH . E 5 HOH A 73 473 127 HOH HOH . E 5 HOH A 74 474 174 HOH HOH . E 5 HOH A 75 475 107 HOH HOH . E 5 HOH A 76 476 114 HOH HOH . E 5 HOH A 77 477 217 HOH HOH . E 5 HOH A 78 478 230 HOH HOH . E 5 HOH A 79 479 71 HOH HOH . E 5 HOH A 80 480 233 HOH HOH . E 5 HOH A 81 481 201 HOH HOH . E 5 HOH A 82 482 221 HOH HOH . E 5 HOH A 83 483 203 HOH HOH . E 5 HOH A 84 484 238 HOH HOH . E 5 HOH A 85 485 156 HOH HOH . E 5 HOH A 86 486 113 HOH HOH . E 5 HOH A 87 487 30 HOH HOH . E 5 HOH A 88 488 219 HOH HOH . E 5 HOH A 89 489 24 HOH HOH . E 5 HOH A 90 490 209 HOH HOH . E 5 HOH A 91 491 31 HOH HOH . E 5 HOH A 92 492 33 HOH HOH . E 5 HOH A 93 493 166 HOH HOH . E 5 HOH A 94 494 60 HOH HOH . E 5 HOH A 95 495 222 HOH HOH . E 5 HOH A 96 496 212 HOH HOH . E 5 HOH A 97 497 27 HOH HOH . E 5 HOH A 98 498 112 HOH HOH . E 5 HOH A 99 499 62 HOH HOH . E 5 HOH A 100 500 213 HOH HOH . E 5 HOH A 101 501 111 HOH HOH . E 5 HOH A 102 502 1 HOH HOH . E 5 HOH A 103 503 2 HOH HOH . E 5 HOH A 104 504 3 HOH HOH . E 5 HOH A 105 505 4 HOH HOH . E 5 HOH A 106 506 5 HOH HOH . E 5 HOH A 107 507 6 HOH HOH . E 5 HOH A 108 508 7 HOH HOH . E 5 HOH A 109 509 8 HOH HOH . E 5 HOH A 110 510 9 HOH HOH . E 5 HOH A 111 511 10 HOH HOH . E 5 HOH A 112 512 11 HOH HOH . E 5 HOH A 113 513 12 HOH HOH . E 5 HOH A 114 514 13 HOH HOH . E 5 HOH A 115 515 14 HOH HOH . E 5 HOH A 116 516 22 HOH HOH . E 5 HOH A 117 517 23 HOH HOH . E 5 HOH A 118 518 29 HOH HOH . E 5 HOH A 119 519 34 HOH HOH . E 5 HOH A 120 520 35 HOH HOH . E 5 HOH A 121 521 36 HOH HOH . E 5 HOH A 122 522 45 HOH HOH . E 5 HOH A 123 523 46 HOH HOH . E 5 HOH A 124 524 47 HOH HOH . E 5 HOH A 125 525 48 HOH HOH . E 5 HOH A 126 526 49 HOH HOH . E 5 HOH A 127 527 50 HOH HOH . E 5 HOH A 128 528 52 HOH HOH . E 5 HOH A 129 529 53 HOH HOH . E 5 HOH A 130 530 56 HOH HOH . E 5 HOH A 131 531 57 HOH HOH . E 5 HOH A 132 532 58 HOH HOH . E 5 HOH A 133 533 59 HOH HOH . E 5 HOH A 134 534 63 HOH HOH . E 5 HOH A 135 535 69 HOH HOH . E 5 HOH A 136 536 75 HOH HOH . E 5 HOH A 137 537 76 HOH HOH . E 5 HOH A 138 538 77 HOH HOH . E 5 HOH A 139 539 78 HOH HOH . E 5 HOH A 140 540 79 HOH HOH . E 5 HOH A 141 541 80 HOH HOH . E 5 HOH A 142 542 81 HOH HOH . E 5 HOH A 143 543 82 HOH HOH . E 5 HOH A 144 544 83 HOH HOH . E 5 HOH A 145 545 84 HOH HOH . E 5 HOH A 146 546 85 HOH HOH . E 5 HOH A 147 547 86 HOH HOH . E 5 HOH A 148 548 87 HOH HOH . E 5 HOH A 149 549 88 HOH HOH . E 5 HOH A 150 550 89 HOH HOH . E 5 HOH A 151 551 90 HOH HOH . E 5 HOH A 152 552 92 HOH HOH . E 5 HOH A 153 553 96 HOH HOH . E 5 HOH A 154 554 97 HOH HOH . E 5 HOH A 155 555 98 HOH HOH . E 5 HOH A 156 556 99 HOH HOH . E 5 HOH A 157 557 100 HOH HOH . E 5 HOH A 158 558 103 HOH HOH . E 5 HOH A 159 559 104 HOH HOH . E 5 HOH A 160 560 105 HOH HOH . E 5 HOH A 161 561 108 HOH HOH . E 5 HOH A 162 562 110 HOH HOH . E 5 HOH A 163 563 115 HOH HOH . E 5 HOH A 164 564 116 HOH HOH . E 5 HOH A 165 565 117 HOH HOH . E 5 HOH A 166 566 118 HOH HOH . E 5 HOH A 167 567 119 HOH HOH . E 5 HOH A 168 568 122 HOH HOH . E 5 HOH A 169 569 123 HOH HOH . E 5 HOH A 170 570 124 HOH HOH . E 5 HOH A 171 571 125 HOH HOH . E 5 HOH A 172 572 126 HOH HOH . E 5 HOH A 173 573 129 HOH HOH . E 5 HOH A 174 574 133 HOH HOH . E 5 HOH A 175 575 134 HOH HOH . E 5 HOH A 176 576 135 HOH HOH . E 5 HOH A 177 577 137 HOH HOH . E 5 HOH A 178 578 138 HOH HOH . E 5 HOH A 179 579 139 HOH HOH . E 5 HOH A 180 580 141 HOH HOH . E 5 HOH A 181 581 143 HOH HOH . E 5 HOH A 182 582 144 HOH HOH . E 5 HOH A 183 583 145 HOH HOH . E 5 HOH A 184 584 146 HOH HOH . E 5 HOH A 185 585 149 HOH HOH . E 5 HOH A 186 586 150 HOH HOH . E 5 HOH A 187 587 151 HOH HOH . E 5 HOH A 188 588 152 HOH HOH . E 5 HOH A 189 589 153 HOH HOH . E 5 HOH A 190 590 154 HOH HOH . E 5 HOH A 191 591 158 HOH HOH . E 5 HOH A 192 592 159 HOH HOH . E 5 HOH A 193 593 160 HOH HOH . E 5 HOH A 194 594 162 HOH HOH . E 5 HOH A 195 595 164 HOH HOH . E 5 HOH A 196 596 167 HOH HOH . E 5 HOH A 197 597 168 HOH HOH . E 5 HOH A 198 598 169 HOH HOH . E 5 HOH A 199 599 170 HOH HOH . E 5 HOH A 200 600 175 HOH HOH . E 5 HOH A 201 601 178 HOH HOH . E 5 HOH A 202 602 185 HOH HOH . E 5 HOH A 203 603 186 HOH HOH . E 5 HOH A 204 604 187 HOH HOH . E 5 HOH A 205 605 188 HOH HOH . E 5 HOH A 206 606 190 HOH HOH . E 5 HOH A 207 607 191 HOH HOH . E 5 HOH A 208 608 192 HOH HOH . E 5 HOH A 209 609 193 HOH HOH . E 5 HOH A 210 610 194 HOH HOH . E 5 HOH A 211 611 196 HOH HOH . E 5 HOH A 212 612 197 HOH HOH . E 5 HOH A 213 613 204 HOH HOH . E 5 HOH A 214 614 205 HOH HOH . E 5 HOH A 215 615 206 HOH HOH . E 5 HOH A 216 616 207 HOH HOH . E 5 HOH A 217 617 208 HOH HOH . E 5 HOH A 218 618 214 HOH HOH . E 5 HOH A 219 619 216 HOH HOH . E 5 HOH A 220 620 220 HOH HOH . E 5 HOH A 221 621 223 HOH HOH . E 5 HOH A 222 622 224 HOH HOH . E 5 HOH A 223 623 225 HOH HOH . E 5 HOH A 224 624 226 HOH HOH . E 5 HOH A 225 625 229 HOH HOH . E 5 HOH A 226 626 235 HOH HOH . E 5 HOH A 227 627 236 HOH HOH . E 5 HOH A 228 628 237 HOH HOH . F 5 HOH B 1 201 73 HOH HOH . F 5 HOH B 2 202 91 HOH HOH . F 5 HOH B 3 203 130 HOH HOH . F 5 HOH B 4 204 131 HOH HOH . F 5 HOH B 5 205 132 HOH HOH . F 5 HOH B 6 206 140 HOH HOH . F 5 HOH B 7 207 142 HOH HOH . F 5 HOH B 8 208 181 HOH HOH . F 5 HOH B 9 209 227 HOH HOH . F 5 HOH B 10 210 228 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 12.214 -10.248 26.125 1 42.99 ? C1 GOL 101 B 1 HETATM 2 O O1 GOL . . . D 4 10.79 -10.323 26.265 1 43.12 ? O1 GOL 101 B 1 HETATM 3 C C2 GOL . . . D 4 12.794 -11.658 26.062 1 42.96 ? C2 GOL 101 B 1 HETATM 4 O O2 GOL . . . D 4 14.13 -11.659 26.575 1 43.77 ? O2 GOL 101 B 1 HETATM 5 C C3 GOL . . . D 4 12.816 -12.171 24.628 1 42.74 ? C3 GOL 101 B 1 HETATM 6 O O3 GOL . . . D 4 12.177 -13.449 24.581 1 42.29 ? O3 GOL 101 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #