data_4TWK # _model_server_result.job_id j7MSXonDBZclv5gZUodaEQ _model_server_result.datetime_utc '2024-10-31 06:15:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4twk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":401}' # _entry.id 4TWK # _exptl.entry_id 4TWK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4TWK _cell.length_a 74.47 _cell.length_b 105.975 _cell.length_c 128.27 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TWK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details Dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 69 A CYS 93 1_555 B SG CYS 69 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 B ND2 ASN 71 B ASN 95 1_555 K C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? metalc ? metalc1 A O GLY 89 A GLY 113 1_555 I MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc2 A O THR 118 A THR 142 1_555 C K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc3 A OG1 THR 118 A THR 142 1_555 C K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc4 A O THR 118 A THR 142 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.071 ? metalc ? metalc5 A O ILE 119 A ILE 143 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.43 ? metalc ? metalc6 A O ILE 119 A ILE 143 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? metalc ? metalc7 A O THR 227 A THR 251 1_555 C K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc8 A OG1 THR 227 A THR 251 1_555 C K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? metalc ? metalc9 A O THR 227 A THR 251 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.036 ? metalc ? metalc10 A O ILE 228 A ILE 252 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? metalc ? metalc11 A O GLY 236 A GLY 260 1_555 I MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc12 C K K . A K 401 1_555 B O THR 118 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc13 C K K . A K 401 1_555 B OG1 THR 118 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc14 C K K . A K 401 1_555 B O THR 227 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc15 C K K . A K 401 1_555 B OG1 THR 227 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc16 D K K . A K 402 1_555 M O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc17 D K K . A K 402 1_555 M O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.26 ? metalc ? metalc18 D K K . A K 402 1_555 B O PHE 121 B PHE 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.371 ? metalc ? metalc19 D K K . A K 402 1_555 N O HOH . B HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.242 ? metalc ? metalc20 B O THR 118 B THR 142 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? metalc ? metalc21 B O ILE 119 B ILE 143 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc22 B O THR 227 B THR 251 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc23 B O ILE 228 B ILE 252 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 329 n n C1 O1 NAG sing 330 n n C1 O5 NAG sing 331 n n C1 H1 NAG sing 332 n n C2 C3 NAG sing 333 n n C2 N2 NAG sing 334 n n C2 H2 NAG sing 335 n n C3 C4 NAG sing 336 n n C3 O3 NAG sing 337 n n C3 H3 NAG sing 338 n n C4 C5 NAG sing 339 n n C4 O4 NAG sing 340 n n C4 H4 NAG sing 341 n n C5 C6 NAG sing 342 n n C5 O5 NAG sing 343 n n C5 H5 NAG sing 344 n n C6 O6 NAG sing 345 n n C6 H61 NAG sing 346 n n C6 H62 NAG sing 347 n n C7 C8 NAG sing 348 n n C7 N2 NAG sing 349 n n C7 O7 NAG doub 350 n n C8 H81 NAG sing 351 n n C8 H82 NAG sing 352 n n C8 H83 NAG sing 353 n n N2 HN2 NAG sing 354 n n O1 HO1 NAG sing 355 n n O3 HO3 NAG sing 356 n n O4 HO4 NAG sing 357 n n O6 HO6 NAG sing 358 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4TWK _atom_sites.fract_transf_matrix[1][1] 0.013428 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009436 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 401 603 K K . D 2 K A 1 402 604 K K . E 3 37X A 1 403 1 37X OGN . F 3 37X A 1 404 2 37X OGN . G 3 37X A 1 405 4 37X OGN . H 3 37X A 1 406 5 37X OGN . I 4 MG A 1 407 1 MG MG . J 2 K B 1 403 602 K K . K 5 NAG B 1 401 750 NAG NAG . L 3 37X B 1 402 3 37X OGN . M 6 HOH A 1 501 1 HOH HOH . M 6 HOH A 2 502 2 HOH HOH . M 6 HOH A 3 503 3 HOH HOH . M 6 HOH A 4 504 5 HOH HOH . M 6 HOH A 5 505 10 HOH HOH . M 6 HOH A 6 506 13 HOH HOH . M 6 HOH A 7 507 15 HOH HOH . M 6 HOH A 8 508 19 HOH HOH . M 6 HOH A 9 509 20 HOH HOH . M 6 HOH A 10 510 22 HOH HOH . M 6 HOH A 11 511 25 HOH HOH . M 6 HOH A 12 512 26 HOH HOH . M 6 HOH A 13 513 27 HOH HOH . N 6 HOH B 1 501 4 HOH HOH . N 6 HOH B 2 502 6 HOH HOH . N 6 HOH B 3 503 7 HOH HOH . N 6 HOH B 4 504 8 HOH HOH . N 6 HOH B 5 505 9 HOH HOH . N 6 HOH B 6 506 11 HOH HOH . N 6 HOH B 7 507 12 HOH HOH . N 6 HOH B 8 508 14 HOH HOH . N 6 HOH B 9 509 16 HOH HOH . N 6 HOH B 10 510 17 HOH HOH . N 6 HOH B 11 511 18 HOH HOH . N 6 HOH B 12 512 21 HOH HOH . N 6 HOH B 13 513 23 HOH HOH . N 6 HOH B 14 514 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . K 5 -8.773 14.47 8.419 1 196.39 ? C1 NAG 401 B 1 HETATM 2 C C2 NAG . . . K 5 -9.345 15.037 7.119 1 196.73 ? C2 NAG 401 B 1 HETATM 3 C C3 NAG . . . K 5 -10.82 14.634 7.216 1 198.12 ? C3 NAG 401 B 1 HETATM 4 C C4 NAG . . . K 5 -10.972 13.114 7.255 1 198.52 ? C4 NAG 401 B 1 HETATM 5 C C5 NAG . . . K 5 -10.204 12.539 8.449 1 198.73 ? C5 NAG 401 B 1 HETATM 6 C C6 NAG . . . K 5 -10.111 11.03 8.442 1 199.11 ? C6 NAG 401 B 1 HETATM 7 C C7 NAG . . . K 5 -9.309 17.24 5.974 1 196.5 ? C7 NAG 401 B 1 HETATM 8 C C8 NAG . . . K 5 -9.11 18.716 6.161 1 196.76 ? C8 NAG 401 B 1 HETATM 9 N N2 NAG . . . K 5 -9.207 16.487 7.088 1 196.9 ? N2 NAG 401 B 1 HETATM 10 O O3 NAG . . . K 5 -11.583 15.193 6.151 1 198.19 ? O3 NAG 401 B 1 HETATM 11 O O4 NAG . . . K 5 -12.353 12.782 7.37 1 199.49 ? O4 NAG 401 B 1 HETATM 12 O O5 NAG . . . K 5 -8.854 13.043 8.463 1 197.48 ? O5 NAG 401 B 1 HETATM 13 O O6 NAG . . . K 5 -9.6 10.527 7.215 1 198.28 ? O6 NAG 401 B 1 HETATM 14 O O7 NAG . . . K 5 -9.57 16.757 4.876 1 196.04 ? O7 NAG 401 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 14 #