data_4TWK # _model_server_result.job_id fW1l_hgIhc6GcKckEikDtw _model_server_result.datetime_utc '2024-11-24 01:31:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4twk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 4TWK # _exptl.entry_id 4TWK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 568.695 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Octyl Glucose Neopentyl Glycol' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4TWK _cell.length_a 74.47 _cell.length_b 105.975 _cell.length_c 128.27 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TWK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details Dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 69 A CYS 93 1_555 B SG CYS 69 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 B ND2 ASN 71 B ASN 95 1_555 K C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? metalc ? metalc1 A O GLY 89 A GLY 113 1_555 I MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc2 A O THR 118 A THR 142 1_555 C K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc3 A OG1 THR 118 A THR 142 1_555 C K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc4 A O THR 118 A THR 142 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.071 ? metalc ? metalc5 A O ILE 119 A ILE 143 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.43 ? metalc ? metalc6 A O ILE 119 A ILE 143 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? metalc ? metalc7 A O THR 227 A THR 251 1_555 C K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc8 A OG1 THR 227 A THR 251 1_555 C K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? metalc ? metalc9 A O THR 227 A THR 251 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.036 ? metalc ? metalc10 A O ILE 228 A ILE 252 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? metalc ? metalc11 A O GLY 236 A GLY 260 1_555 I MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc12 C K K . A K 401 1_555 B O THR 118 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc13 C K K . A K 401 1_555 B OG1 THR 118 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc14 C K K . A K 401 1_555 B O THR 227 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc15 C K K . A K 401 1_555 B OG1 THR 227 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc16 D K K . A K 402 1_555 M O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc17 D K K . A K 402 1_555 M O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.26 ? metalc ? metalc18 D K K . A K 402 1_555 B O PHE 121 B PHE 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.371 ? metalc ? metalc19 D K K . A K 402 1_555 N O HOH . B HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.242 ? metalc ? metalc20 B O THR 118 B THR 142 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? metalc ? metalc21 B O ILE 119 B ILE 143 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc22 B O THR 227 B THR 251 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc23 B O ILE 228 B ILE 252 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? # _chem_comp.formula 'C27 H52 O12' _chem_comp.formula_weight 568.695 _chem_comp.id 37X _chem_comp.mon_nstd_flag . _chem_comp.name 'Octyl Glucose Neopentyl Glycol' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C4 37X sing 1 n n O3 C3 37X sing 2 n n C3 C4 37X sing 3 n n C3 C2 37X sing 4 n n C4 C5 37X sing 5 n n O6 C6 37X sing 6 n n O2 C2 37X sing 7 n n C5 C6 37X sing 8 n n C5 O5 37X sing 9 n n C2 C1 37X sing 10 n n CBC CBE 37X sing 11 n n CBE CBG 37X sing 12 n n C1 O5 37X sing 13 n n C1 O1 37X sing 14 n n CBG CBI 37X sing 15 n n O1 CBS 37X sing 16 n n CBI CBK 37X sing 17 n n CBS CCM 37X sing 18 n n CBK CBQ 37X sing 19 n n CBQ CCM 37X sing 20 n n CCM CBT 37X sing 21 n n CCM CBR 37X sing 22 n n CBT OBV 37X sing 23 n n CBR CBL 37X sing 24 n n OBV CCJ 37X sing 25 n n OAP CCL 37X sing 26 n n CCL CCJ 37X sing 27 n n CCL CCH 37X sing 28 n n OAN CCH 37X sing 29 n n CCJ OBX 37X sing 30 n n CBL CBJ 37X sing 31 n n OBX CCF 37X sing 32 n n CCH CCQ 37X sing 33 n n CCQ CCF 37X sing 34 n n CCQ OCB 37X sing 35 n n CBJ CBH 37X sing 36 n n CCF CBP 37X sing 37 n n CBP OAL 37X sing 38 n n CBH CBF 37X sing 39 n n CBF CBD 37X sing 40 n n OAL H1 37X sing 41 n n OAN H2 37X sing 42 n n C1 H3 37X sing 43 n n C2 H4 37X sing 44 n n O2 H5 37X sing 45 n n C3 H6 37X sing 46 n n O3 H7 37X sing 47 n n C4 H8 37X sing 48 n n O4 H9 37X sing 49 n n C5 H10 37X sing 50 n n C6 H11 37X sing 51 n n C6 H12 37X sing 52 n n O6 H13 37X sing 53 n n OAP H14 37X sing 54 n n CBC H15 37X sing 55 n n CBC H16 37X sing 56 n n CBC H17 37X sing 57 n n CBD H18 37X sing 58 n n CBD H19 37X sing 59 n n CBD H20 37X sing 60 n n CBE H21 37X sing 61 n n CBE H22 37X sing 62 n n CBF H23 37X sing 63 n n CBF H24 37X sing 64 n n CBG H25 37X sing 65 n n CBG H26 37X sing 66 n n CBH H27 37X sing 67 n n CBH H28 37X sing 68 n n CBI H29 37X sing 69 n n CBI H30 37X sing 70 n n CBJ H31 37X sing 71 n n CBJ H32 37X sing 72 n n CBK H33 37X sing 73 n n CBK H34 37X sing 74 n n CBL H35 37X sing 75 n n CBL H36 37X sing 76 n n CBP H37 37X sing 77 n n CBP H38 37X sing 78 n n CBQ H39 37X sing 79 n n CBQ H40 37X sing 80 n n CBR H41 37X sing 81 n n CBR H42 37X sing 82 n n CBS H43 37X sing 83 n n CBS H44 37X sing 84 n n CBT H45 37X sing 85 n n CBT H46 37X sing 86 n n OCB H47 37X sing 87 n n CCF H48 37X sing 88 n n CCH H49 37X sing 89 n n CCJ H50 37X sing 90 n n CCL H51 37X sing 91 n n CCQ H52 37X sing 92 n n # _atom_sites.entry_id 4TWK _atom_sites.fract_transf_matrix[1][1] 0.013428 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009436 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 401 603 K K . D 2 K A 1 402 604 K K . E 3 37X A 1 403 1 37X OGN . F 3 37X A 1 404 2 37X OGN . G 3 37X A 1 405 4 37X OGN . H 3 37X A 1 406 5 37X OGN . I 4 MG A 1 407 1 MG MG . J 2 K B 1 403 602 K K . K 5 NAG B 1 401 750 NAG NAG . L 3 37X B 1 402 3 37X OGN . M 6 HOH A 1 501 1 HOH HOH . M 6 HOH A 2 502 2 HOH HOH . M 6 HOH A 3 503 3 HOH HOH . M 6 HOH A 4 504 5 HOH HOH . M 6 HOH A 5 505 10 HOH HOH . M 6 HOH A 6 506 13 HOH HOH . M 6 HOH A 7 507 15 HOH HOH . M 6 HOH A 8 508 19 HOH HOH . M 6 HOH A 9 509 20 HOH HOH . M 6 HOH A 10 510 22 HOH HOH . M 6 HOH A 11 511 25 HOH HOH . M 6 HOH A 12 512 26 HOH HOH . M 6 HOH A 13 513 27 HOH HOH . N 6 HOH B 1 501 4 HOH HOH . N 6 HOH B 2 502 6 HOH HOH . N 6 HOH B 3 503 7 HOH HOH . N 6 HOH B 4 504 8 HOH HOH . N 6 HOH B 5 505 9 HOH HOH . N 6 HOH B 6 506 11 HOH HOH . N 6 HOH B 7 507 12 HOH HOH . N 6 HOH B 8 508 14 HOH HOH . N 6 HOH B 9 509 16 HOH HOH . N 6 HOH B 10 510 17 HOH HOH . N 6 HOH B 11 511 18 HOH HOH . N 6 HOH B 12 512 21 HOH HOH . N 6 HOH B 13 513 23 HOH HOH . N 6 HOH B 14 514 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 37X . . . F 3 7.906 -30.601 -48.676 1 149.97 ? C1 37X 404 A 1 HETATM 2 O O1 37X . . . F 3 7.639 -29.579 -47.743 1 147.28 ? O1 37X 404 A 1 HETATM 3 C C2 37X . . . F 3 7.91 -31.942 -47.945 1 150.98 ? C2 37X 404 A 1 HETATM 4 O O2 37X . . . F 3 6.64 -32.17 -47.341 1 150.61 ? O2 37X 404 A 1 HETATM 5 C C3 37X . . . F 3 8.237 -33.075 -48.916 1 152.03 ? C3 37X 404 A 1 HETATM 6 O O3 37X . . . F 3 8.357 -34.306 -48.213 1 152.84 ? O3 37X 404 A 1 HETATM 7 C C4 37X . . . F 3 9.519 -32.766 -49.682 1 151.81 ? C4 37X 404 A 1 HETATM 8 O O4 37X . . . F 3 9.698 -33.791 -50.669 1 152.08 ? O4 37X 404 A 1 HETATM 9 C C5 37X . . . F 3 9.417 -31.401 -50.358 1 151.15 ? C5 37X 404 A 1 HETATM 10 O O5 37X . . . F 3 9.129 -30.396 -49.371 1 150.84 ? O5 37X 404 A 1 HETATM 11 C C6 37X . . . F 3 10.678 -30.97 -51.069 1 150.89 ? C6 37X 404 A 1 HETATM 12 O O6 37X . . . F 3 10.442 -29.82 -51.869 1 150.83 ? O6 37X 404 A 1 HETATM 13 C CBC 37X . . . F 3 5.253 -23.208 -49.414 1 131.22 ? CBC 37X 404 A 1 HETATM 14 C CBE 37X . . . F 3 6.217 -24.286 -49.888 1 131.76 ? CBE 37X 404 A 1 HETATM 15 C CBG 37X . . . F 3 7.188 -24.785 -48.823 1 132.89 ? CBG 37X 404 A 1 HETATM 16 C CBH 37X . . . F 3 5.506 -31.467 -42.868 1 140.58 ? CBH 37X 404 A 1 HETATM 17 C CBI 37X . . . F 3 6.63 -25.864 -47.901 1 134.46 ? CBI 37X 404 A 1 HETATM 18 C CBJ 37X . . . F 3 6.876 -30.839 -42.634 1 140.61 ? CBJ 37X 404 A 1 HETATM 19 C CBK 37X . . . F 3 7.513 -26.165 -46.704 1 136.12 ? CBK 37X 404 A 1 HETATM 20 C CBL 37X . . . F 3 7.117 -29.523 -43.376 1 140.72 ? CBL 37X 404 A 1 HETATM 21 C CBQ 37X . . . F 3 7.054 -27.383 -45.897 1 138.36 ? CBQ 37X 404 A 1 HETATM 22 C CBR 37X . . . F 3 7.569 -29.716 -44.826 1 141.08 ? CBR 37X 404 A 1 HETATM 23 C CBS 37X . . . F 3 8.699 -29.02 -46.92 1 144.16 ? CBS 37X 404 A 1 HETATM 24 C CBT 37X . . . F 3 9.32 -27.914 -44.899 1 141.51 ? CBT 37X 404 A 1 HETATM 25 C CCM 37X . . . F 3 8.101 -28.493 -45.615 1 141.26 ? CCM 37X 404 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 447 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 25 #