data_4TWP
#
_model_server_result.job_id            7K5I7ow9bLH3ThEpXXu1zQ 
_model_server_result.datetime_utc      '2024-11-27 02:26:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4twp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    4TWP 
#
_exptl.entry_id    4TWP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4TWP 
_cell.length_a            56.818 
_cell.length_b            113.801 
_cell.length_c            131.164 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4TWP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,L 1 1 
B,H,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 120 A GLU 352 1_555 D NI NI . A NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc2 A NE2 HIS 258 A HIS 490 1_555 E NI NI . A NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? 
metalc ? metalc3 A OE1 GLU 262 A GLU 494 1_555 E NI NI . A NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc4 D NI NI . A NI 602 1_555 L O HOH . A HOH 738 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? 
metalc ? metalc5 G NA NA . A NA 605 1_555 L O HOH . A HOH 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.08 ? 
metalc ? metalc6 G NA NA . A NA 605 1_555 L O HOH . A HOH 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.078 ? 
metalc ? metalc7 B OE1 GLU 120 B GLU 352 1_555 I NI NI . B NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc8 B OE2 GLU 120 B GLU 352 1_555 I NI NI . B NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc9 B OH TYR 161 B TYR 393 1_555 K NA NA . B NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.146 ? 
metalc ? metalc10 B NE2 HIS 258 B HIS 490 1_555 J NI NI . B NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? 
metalc ? metalc11 B OE1 GLU 262 B GLU 494 1_555 J NI NI . B NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc12 I NI NI . B NI 602 1_555 M O HOH . B HOH 720 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc13 J NI NI . B NI 603 1_555 M O HOH . B HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4TWP 
_atom_sites.fract_transf_matrix[1][1]    0.0176 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008787 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007624 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AXI A 1 601 9000 AXI 866 . 
D 3 NI A 1 602 2 NI NI . 
E 3 NI A 1 603 3 NI NI . 
F 4 NA A 1 604 1 NA NA . 
G 4 NA A 1 605 3 NA NA . 
H 2 AXI B 1 601 9000 AXI 866 . 
I 3 NI B 1 602 1 NI NI . 
J 3 NI B 1 603 4 NI NI . 
K 4 NA B 1 604 2 NA NA . 
L 5 HOH A 1 701 98 HOH HOH . 
L 5 HOH A 2 702 3 HOH HOH . 
L 5 HOH A 3 703 150 HOH HOH . 
L 5 HOH A 4 704 145 HOH HOH . 
L 5 HOH A 5 705 116 HOH HOH . 
L 5 HOH A 6 706 188 HOH HOH . 
L 5 HOH A 7 707 142 HOH HOH . 
L 5 HOH A 8 708 9 HOH HOH . 
L 5 HOH A 9 709 198 HOH HOH . 
L 5 HOH A 10 710 10 HOH HOH . 
L 5 HOH A 11 711 34 HOH HOH . 
L 5 HOH A 12 712 172 HOH HOH . 
L 5 HOH A 13 713 47 HOH HOH . 
L 5 HOH A 14 714 78 HOH HOH . 
L 5 HOH A 15 715 77 HOH HOH . 
L 5 HOH A 16 716 38 HOH HOH . 
L 5 HOH A 17 717 21 HOH HOH . 
L 5 HOH A 18 718 160 HOH HOH . 
L 5 HOH A 19 719 29 HOH HOH . 
L 5 HOH A 20 720 194 HOH HOH . 
L 5 HOH A 21 721 64 HOH HOH . 
L 5 HOH A 22 722 200 HOH HOH . 
L 5 HOH A 23 723 20 HOH HOH . 
L 5 HOH A 24 724 146 HOH HOH . 
L 5 HOH A 25 725 86 HOH HOH . 
L 5 HOH A 26 726 16 HOH HOH . 
L 5 HOH A 27 727 52 HOH HOH . 
L 5 HOH A 28 728 54 HOH HOH . 
L 5 HOH A 29 729 105 HOH HOH . 
L 5 HOH A 30 730 6 HOH HOH . 
L 5 HOH A 31 731 92 HOH HOH . 
L 5 HOH A 32 732 22 HOH HOH . 
L 5 HOH A 33 733 100 HOH HOH . 
L 5 HOH A 34 734 158 HOH HOH . 
L 5 HOH A 35 735 79 HOH HOH . 
L 5 HOH A 36 736 11 HOH HOH . 
L 5 HOH A 37 737 8 HOH HOH . 
L 5 HOH A 38 738 148 HOH HOH . 
L 5 HOH A 39 739 101 HOH HOH . 
L 5 HOH A 40 740 144 HOH HOH . 
L 5 HOH A 41 741 96 HOH HOH . 
L 5 HOH A 42 742 26 HOH HOH . 
L 5 HOH A 43 743 93 HOH HOH . 
L 5 HOH A 44 744 17 HOH HOH . 
L 5 HOH A 45 745 134 HOH HOH . 
L 5 HOH A 46 746 190 HOH HOH . 
L 5 HOH A 47 747 5 HOH HOH . 
L 5 HOH A 48 748 23 HOH HOH . 
L 5 HOH A 49 749 2 HOH HOH . 
L 5 HOH A 50 750 81 HOH HOH . 
L 5 HOH A 51 751 72 HOH HOH . 
L 5 HOH A 52 752 33 HOH HOH . 
L 5 HOH A 53 753 73 HOH HOH . 
L 5 HOH A 54 754 36 HOH HOH . 
L 5 HOH A 55 755 39 HOH HOH . 
L 5 HOH A 56 756 69 HOH HOH . 
L 5 HOH A 57 757 143 HOH HOH . 
L 5 HOH A 58 758 129 HOH HOH . 
L 5 HOH A 59 759 108 HOH HOH . 
L 5 HOH A 60 760 84 HOH HOH . 
L 5 HOH A 61 761 55 HOH HOH . 
L 5 HOH A 62 762 196 HOH HOH . 
L 5 HOH A 63 763 27 HOH HOH . 
L 5 HOH A 64 764 155 HOH HOH . 
L 5 HOH A 65 765 57 HOH HOH . 
L 5 HOH A 66 766 4 HOH HOH . 
L 5 HOH A 67 767 1 HOH HOH . 
L 5 HOH A 68 768 89 HOH HOH . 
L 5 HOH A 69 769 151 HOH HOH . 
L 5 HOH A 70 770 156 HOH HOH . 
L 5 HOH A 71 771 12 HOH HOH . 
L 5 HOH A 72 772 115 HOH HOH . 
L 5 HOH A 73 773 139 HOH HOH . 
L 5 HOH A 74 774 61 HOH HOH . 
L 5 HOH A 75 775 44 HOH HOH . 
L 5 HOH A 76 776 127 HOH HOH . 
L 5 HOH A 77 777 192 HOH HOH . 
L 5 HOH A 78 778 14 HOH HOH . 
L 5 HOH A 79 779 51 HOH HOH . 
L 5 HOH A 80 780 40 HOH HOH . 
L 5 HOH A 81 781 60 HOH HOH . 
L 5 HOH A 82 782 88 HOH HOH . 
L 5 HOH A 83 783 205 HOH HOH . 
L 5 HOH A 84 784 208 HOH HOH . 
L 5 HOH A 85 785 140 HOH HOH . 
L 5 HOH A 86 786 125 HOH HOH . 
L 5 HOH A 87 787 35 HOH HOH . 
L 5 HOH A 88 788 53 HOH HOH . 
L 5 HOH A 89 789 30 HOH HOH . 
L 5 HOH A 90 790 112 HOH HOH . 
L 5 HOH A 91 791 18 HOH HOH . 
L 5 HOH A 92 792 186 HOH HOH . 
L 5 HOH A 93 793 59 HOH HOH . 
L 5 HOH A 94 794 170 HOH HOH . 
L 5 HOH A 95 795 187 HOH HOH . 
L 5 HOH A 96 796 153 HOH HOH . 
L 5 HOH A 97 797 70 HOH HOH . 
L 5 HOH A 98 798 97 HOH HOH . 
L 5 HOH A 99 799 136 HOH HOH . 
L 5 HOH A 100 800 120 HOH HOH . 
L 5 HOH A 101 801 159 HOH HOH . 
L 5 HOH A 102 802 122 HOH HOH . 
L 5 HOH A 103 803 103 HOH HOH . 
L 5 HOH A 104 804 137 HOH HOH . 
L 5 HOH A 105 805 165 HOH HOH . 
L 5 HOH A 106 806 195 HOH HOH . 
L 5 HOH A 107 807 133 HOH HOH . 
L 5 HOH A 108 808 193 HOH HOH . 
L 5 HOH A 109 809 214 HOH HOH . 
L 5 HOH A 110 810 206 HOH HOH . 
L 5 HOH A 111 811 24 HOH HOH . 
L 5 HOH A 112 812 204 HOH HOH . 
L 5 HOH A 113 813 58 HOH HOH . 
L 5 HOH A 114 814 104 HOH HOH . 
L 5 HOH A 115 815 174 HOH HOH . 
L 5 HOH A 116 816 171 HOH HOH . 
L 5 HOH A 117 817 173 HOH HOH . 
L 5 HOH A 118 818 163 HOH HOH . 
L 5 HOH A 119 819 182 HOH HOH . 
L 5 HOH A 120 820 179 HOH HOH . 
L 5 HOH A 121 821 91 HOH HOH . 
L 5 HOH A 122 822 117 HOH HOH . 
L 5 HOH A 123 823 118 HOH HOH . 
L 5 HOH A 124 824 109 HOH HOH . 
L 5 HOH A 125 825 68 HOH HOH . 
L 5 HOH A 126 826 147 HOH HOH . 
L 5 HOH A 127 827 63 HOH HOH . 
L 5 HOH A 128 828 76 HOH HOH . 
L 5 HOH A 129 829 135 HOH HOH . 
L 5 HOH A 130 830 62 HOH HOH . 
L 5 HOH A 131 831 71 HOH HOH . 
L 5 HOH A 132 832 168 HOH HOH . 
L 5 HOH A 133 833 212 HOH HOH . 
M 5 HOH B 1 701 45 HOH HOH . 
M 5 HOH B 2 702 56 HOH HOH . 
M 5 HOH B 3 703 85 HOH HOH . 
M 5 HOH B 4 704 83 HOH HOH . 
M 5 HOH B 5 705 181 HOH HOH . 
M 5 HOH B 6 706 102 HOH HOH . 
M 5 HOH B 7 707 114 HOH HOH . 
M 5 HOH B 8 708 43 HOH HOH . 
M 5 HOH B 9 709 15 HOH HOH . 
M 5 HOH B 10 710 75 HOH HOH . 
M 5 HOH B 11 711 41 HOH HOH . 
M 5 HOH B 12 712 80 HOH HOH . 
M 5 HOH B 13 713 107 HOH HOH . 
M 5 HOH B 14 714 37 HOH HOH . 
M 5 HOH B 15 715 152 HOH HOH . 
M 5 HOH B 16 716 128 HOH HOH . 
M 5 HOH B 17 717 94 HOH HOH . 
M 5 HOH B 18 718 106 HOH HOH . 
M 5 HOH B 19 719 46 HOH HOH . 
M 5 HOH B 20 720 183 HOH HOH . 
M 5 HOH B 21 721 113 HOH HOH . 
M 5 HOH B 22 722 65 HOH HOH . 
M 5 HOH B 23 723 50 HOH HOH . 
M 5 HOH B 24 724 110 HOH HOH . 
M 5 HOH B 25 725 48 HOH HOH . 
M 5 HOH B 26 726 32 HOH HOH . 
M 5 HOH B 27 727 87 HOH HOH . 
M 5 HOH B 28 728 42 HOH HOH . 
M 5 HOH B 29 729 19 HOH HOH . 
M 5 HOH B 30 730 161 HOH HOH . 
M 5 HOH B 31 731 119 HOH HOH . 
M 5 HOH B 32 732 31 HOH HOH . 
M 5 HOH B 33 733 28 HOH HOH . 
M 5 HOH B 34 734 67 HOH HOH . 
M 5 HOH B 35 735 82 HOH HOH . 
M 5 HOH B 36 736 130 HOH HOH . 
M 5 HOH B 37 737 95 HOH HOH . 
M 5 HOH B 38 738 74 HOH HOH . 
M 5 HOH B 39 739 25 HOH HOH . 
M 5 HOH B 40 740 121 HOH HOH . 
M 5 HOH B 41 741 169 HOH HOH . 
M 5 HOH B 42 742 141 HOH HOH . 
M 5 HOH B 43 743 13 HOH HOH . 
M 5 HOH B 44 744 66 HOH HOH . 
M 5 HOH B 45 745 154 HOH HOH . 
M 5 HOH B 46 746 49 HOH HOH . 
M 5 HOH B 47 747 184 HOH HOH . 
M 5 HOH B 48 748 197 HOH HOH . 
M 5 HOH B 49 749 90 HOH HOH . 
M 5 HOH B 50 750 138 HOH HOH . 
M 5 HOH B 51 751 7 HOH HOH . 
M 5 HOH B 52 752 209 HOH HOH . 
M 5 HOH B 53 753 132 HOH HOH . 
M 5 HOH B 54 754 111 HOH HOH . 
M 5 HOH B 55 755 191 HOH HOH . 
M 5 HOH B 56 756 126 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               72.25 
_atom_site.Cartn_y               -1.928 
_atom_site.Cartn_z               35.309 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        91.68 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           602 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#