data_4TWY # _model_server_result.job_id vlfX1CJw3D6S-LDm915_Fg _model_server_result.datetime_utc '2024-10-20 00:33:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4twy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4TWY # _exptl.entry_id 4TWY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 470.606 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-({[(3S,4aR,8aS)-2-(biphenyl-4-ylcarbonyl)decahydroisoquinolin-3-yl]methyl}amino)-3-(1H-imidazol-5-yl)propanal _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment 'aza-decaline type inhibitor' _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.98 _cell.angle_gamma 90 _cell.entry_id 4TWY _cell.length_a 107.834 _cell.length_b 82.128 _cell.length_c 53.271 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TWY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C24 _struct_conn.ptnr2_label_comp_id 3BL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 3BL _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.831 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C29 H34 N4 O2' _chem_comp.formula_weight 470.606 _chem_comp.id 3BL _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-({[(3S,4aR,8aS)-2-(biphenyl-4-ylcarbonyl)decahydroisoquinolin-3-yl]methyl}amino)-3-(1H-imidazol-5-yl)propanal _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C6 3BL doub 1 n y C7 C8 3BL sing 2 n y C6 C5 3BL sing 3 n y C8 C9 3BL doub 4 n y C5 C4 3BL sing 5 n n C5 C10 3BL doub 6 n y C9 C10 3BL sing 7 n y N2 C27 3BL sing 8 n y N2 C28 3BL doub 9 n y C11 C4 3BL doub 10 n y C11 C12 3BL sing 11 n y C4 C3 3BL sing 12 n y C27 C26 3BL doub 13 n y C12 C1 3BL doub 14 n y C28 N3 3BL sing 15 n y C3 C2 3BL doub 16 n y O C 3BL doub 17 n n C1 C2 3BL sing 18 n y C1 C 3BL sing 19 n n O1 C24 3BL doub 20 n n C26 N3 3BL sing 21 n y C26 C25 3BL sing 22 n n C N 3BL sing 23 n n C23 C24 3BL sing 24 n n C23 C25 3BL sing 25 n n C23 N1 3BL sing 26 n n N C21 3BL sing 27 n n N C13 3BL sing 28 n n C22 N1 3BL sing 29 n n C22 C21 3BL sing 30 n n C21 C20 3BL sing 31 n n C13 C14 3BL sing 32 n n C20 C19 3BL sing 33 n n C14 C19 3BL sing 34 n n C14 C15 3BL sing 35 n n C19 C18 3BL sing 36 n n C15 C16 3BL sing 37 n n C18 C17 3BL sing 38 n n C16 C17 3BL sing 39 n n C2 H1 3BL sing 40 n n C3 H2 3BL sing 41 n n C6 H3 3BL sing 42 n n C24 H4 3BL sing 43 n n C23 H5 3BL sing 44 n n C25 H6 3BL sing 45 n n C25 H7 3BL sing 46 n n N3 H8 3BL sing 47 n n C28 H9 3BL sing 48 n n C27 H11 3BL sing 49 n n N1 H12 3BL sing 50 n n C22 H14 3BL sing 51 n n C22 H15 3BL sing 52 n n C21 H16 3BL sing 53 n n C20 H17 3BL sing 54 n n C20 H18 3BL sing 55 n n C19 H19 3BL sing 56 n n C18 H20 3BL sing 57 n n C18 H21 3BL sing 58 n n C17 H22 3BL sing 59 n n C17 H23 3BL sing 60 n n C16 H24 3BL sing 61 n n C16 H25 3BL sing 62 n n C15 H26 3BL sing 63 n n C15 H27 3BL sing 64 n n C14 H28 3BL sing 65 n n C13 H29 3BL sing 66 n n C13 H30 3BL sing 67 n n C12 H31 3BL sing 68 n n C11 H32 3BL sing 69 n n C10 H33 3BL sing 70 n n C9 H34 3BL sing 71 n n C8 H35 3BL sing 72 n n C7 H36 3BL sing 73 n n # _atom_sites.entry_id 4TWY _atom_sites.fract_transf_matrix[1][1] 0.009274 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002481 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012176 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019432 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3BL A 1 401 1 3BL SDD . C 3 HOH A 1 501 123 HOH HOH . C 3 HOH A 2 502 95 HOH HOH . C 3 HOH A 3 503 61 HOH HOH . C 3 HOH A 4 504 32 HOH HOH . C 3 HOH A 5 505 25 HOH HOH . C 3 HOH A 6 506 132 HOH HOH . C 3 HOH A 7 507 130 HOH HOH . C 3 HOH A 8 508 39 HOH HOH . C 3 HOH A 9 509 131 HOH HOH . C 3 HOH A 10 510 34 HOH HOH . C 3 HOH A 11 511 21 HOH HOH . C 3 HOH A 12 512 52 HOH HOH . C 3 HOH A 13 513 137 HOH HOH . C 3 HOH A 14 514 96 HOH HOH . C 3 HOH A 15 515 74 HOH HOH . C 3 HOH A 16 516 115 HOH HOH . C 3 HOH A 17 517 16 HOH HOH . C 3 HOH A 18 518 65 HOH HOH . C 3 HOH A 19 519 36 HOH HOH . C 3 HOH A 20 520 30 HOH HOH . C 3 HOH A 21 521 11 HOH HOH . C 3 HOH A 22 522 114 HOH HOH . C 3 HOH A 23 523 92 HOH HOH . C 3 HOH A 24 524 89 HOH HOH . C 3 HOH A 25 525 84 HOH HOH . C 3 HOH A 26 526 162 HOH HOH . C 3 HOH A 27 527 146 HOH HOH . C 3 HOH A 28 528 23 HOH HOH . C 3 HOH A 29 529 85 HOH HOH . C 3 HOH A 30 530 136 HOH HOH . C 3 HOH A 31 531 86 HOH HOH . C 3 HOH A 32 532 90 HOH HOH . C 3 HOH A 33 533 151 HOH HOH . C 3 HOH A 34 534 83 HOH HOH . C 3 HOH A 35 535 168 HOH HOH . C 3 HOH A 36 536 154 HOH HOH . C 3 HOH A 37 537 158 HOH HOH . C 3 HOH A 38 538 156 HOH HOH . C 3 HOH A 39 539 1 HOH HOH . C 3 HOH A 40 540 2 HOH HOH . C 3 HOH A 41 541 3 HOH HOH . C 3 HOH A 42 542 4 HOH HOH . C 3 HOH A 43 543 5 HOH HOH . C 3 HOH A 44 544 6 HOH HOH . C 3 HOH A 45 545 7 HOH HOH . C 3 HOH A 46 546 8 HOH HOH . C 3 HOH A 47 547 9 HOH HOH . C 3 HOH A 48 548 10 HOH HOH . C 3 HOH A 49 549 12 HOH HOH . C 3 HOH A 50 550 13 HOH HOH . C 3 HOH A 51 551 14 HOH HOH . C 3 HOH A 52 552 15 HOH HOH . C 3 HOH A 53 553 17 HOH HOH . C 3 HOH A 54 554 18 HOH HOH . C 3 HOH A 55 555 19 HOH HOH . C 3 HOH A 56 556 20 HOH HOH . C 3 HOH A 57 557 22 HOH HOH . C 3 HOH A 58 558 24 HOH HOH . C 3 HOH A 59 559 26 HOH HOH . C 3 HOH A 60 560 27 HOH HOH . C 3 HOH A 61 561 28 HOH HOH . C 3 HOH A 62 562 29 HOH HOH . C 3 HOH A 63 563 31 HOH HOH . C 3 HOH A 64 564 33 HOH HOH . C 3 HOH A 65 565 35 HOH HOH . C 3 HOH A 66 566 37 HOH HOH . C 3 HOH A 67 567 38 HOH HOH . C 3 HOH A 68 568 40 HOH HOH . C 3 HOH A 69 569 41 HOH HOH . C 3 HOH A 70 570 42 HOH HOH . C 3 HOH A 71 571 43 HOH HOH . C 3 HOH A 72 572 44 HOH HOH . C 3 HOH A 73 573 45 HOH HOH . C 3 HOH A 74 574 46 HOH HOH . C 3 HOH A 75 575 47 HOH HOH . C 3 HOH A 76 576 48 HOH HOH . C 3 HOH A 77 577 49 HOH HOH . C 3 HOH A 78 578 50 HOH HOH . C 3 HOH A 79 579 51 HOH HOH . C 3 HOH A 80 580 53 HOH HOH . C 3 HOH A 81 581 54 HOH HOH . C 3 HOH A 82 582 55 HOH HOH . C 3 HOH A 83 583 56 HOH HOH . C 3 HOH A 84 584 57 HOH HOH . C 3 HOH A 85 585 58 HOH HOH . C 3 HOH A 86 586 59 HOH HOH . C 3 HOH A 87 587 60 HOH HOH . C 3 HOH A 88 588 62 HOH HOH . C 3 HOH A 89 589 63 HOH HOH . C 3 HOH A 90 590 64 HOH HOH . C 3 HOH A 91 591 66 HOH HOH . C 3 HOH A 92 592 67 HOH HOH . C 3 HOH A 93 593 68 HOH HOH . C 3 HOH A 94 594 69 HOH HOH . C 3 HOH A 95 595 70 HOH HOH . C 3 HOH A 96 596 71 HOH HOH . C 3 HOH A 97 597 72 HOH HOH . C 3 HOH A 98 598 73 HOH HOH . C 3 HOH A 99 599 75 HOH HOH . C 3 HOH A 100 600 76 HOH HOH . C 3 HOH A 101 601 77 HOH HOH . C 3 HOH A 102 602 78 HOH HOH . C 3 HOH A 103 603 79 HOH HOH . C 3 HOH A 104 604 80 HOH HOH . C 3 HOH A 105 605 81 HOH HOH . C 3 HOH A 106 606 82 HOH HOH . C 3 HOH A 107 607 87 HOH HOH . C 3 HOH A 108 608 88 HOH HOH . C 3 HOH A 109 609 91 HOH HOH . C 3 HOH A 110 610 93 HOH HOH . C 3 HOH A 111 611 94 HOH HOH . C 3 HOH A 112 612 97 HOH HOH . C 3 HOH A 113 613 98 HOH HOH . C 3 HOH A 114 614 99 HOH HOH . C 3 HOH A 115 615 100 HOH HOH . C 3 HOH A 116 616 101 HOH HOH . C 3 HOH A 117 617 102 HOH HOH . C 3 HOH A 118 618 103 HOH HOH . C 3 HOH A 119 619 104 HOH HOH . C 3 HOH A 120 620 105 HOH HOH . C 3 HOH A 121 621 106 HOH HOH . C 3 HOH A 122 622 107 HOH HOH . C 3 HOH A 123 623 108 HOH HOH . C 3 HOH A 124 624 109 HOH HOH . C 3 HOH A 125 625 110 HOH HOH . C 3 HOH A 126 626 111 HOH HOH . C 3 HOH A 127 627 112 HOH HOH . C 3 HOH A 128 628 113 HOH HOH . C 3 HOH A 129 629 117 HOH HOH . C 3 HOH A 130 630 118 HOH HOH . C 3 HOH A 131 631 119 HOH HOH . C 3 HOH A 132 632 120 HOH HOH . C 3 HOH A 133 633 121 HOH HOH . C 3 HOH A 134 634 122 HOH HOH . C 3 HOH A 135 635 124 HOH HOH . C 3 HOH A 136 636 125 HOH HOH . C 3 HOH A 137 637 126 HOH HOH . C 3 HOH A 138 638 127 HOH HOH . C 3 HOH A 139 639 128 HOH HOH . C 3 HOH A 140 640 129 HOH HOH . C 3 HOH A 141 641 133 HOH HOH . C 3 HOH A 142 642 134 HOH HOH . C 3 HOH A 143 643 135 HOH HOH . C 3 HOH A 144 644 138 HOH HOH . C 3 HOH A 145 645 139 HOH HOH . C 3 HOH A 146 646 140 HOH HOH . C 3 HOH A 147 647 141 HOH HOH . C 3 HOH A 148 648 142 HOH HOH . C 3 HOH A 149 649 143 HOH HOH . C 3 HOH A 150 650 144 HOH HOH . C 3 HOH A 151 651 147 HOH HOH . C 3 HOH A 152 652 148 HOH HOH . C 3 HOH A 153 653 149 HOH HOH . C 3 HOH A 154 654 150 HOH HOH . C 3 HOH A 155 655 152 HOH HOH . C 3 HOH A 156 656 153 HOH HOH . C 3 HOH A 157 657 157 HOH HOH . C 3 HOH A 158 658 159 HOH HOH . C 3 HOH A 159 659 161 HOH HOH . C 3 HOH A 160 660 163 HOH HOH . C 3 HOH A 161 661 165 HOH HOH . C 3 HOH A 162 662 166 HOH HOH . C 3 HOH A 163 663 170 HOH HOH . C 3 HOH A 164 664 171 HOH HOH . C 3 HOH A 165 665 172 HOH HOH . C 3 HOH A 166 666 173 HOH HOH . C 3 HOH A 167 667 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3BL . . . B 2 -27.537 -43.313 0.966 1 20 ? C1 3BL 401 A 1 HETATM 2 O O1 3BL . . . B 2 -20.833 -45.094 1.062 1 20 ? O1 3BL 401 A 1 HETATM 3 C C2 3BL . . . B 2 -27.339 -44.664 1.152 1 20 ? C2 3BL 401 A 1 HETATM 4 C C3 3BL . . . B 2 -28.249 -45.593 0.696 1 20 ? C3 3BL 401 A 1 HETATM 5 C C4 3BL . . . B 2 -29.366 -45.149 0.046 1 20 ? C4 3BL 401 A 1 HETATM 6 C C5 3BL . . . B 2 -30.374 -46.072 -0.486 1 20 ? C5 3BL 401 A 1 HETATM 7 C C6 3BL . . . B 2 -31.033 -45.696 -1.628 1 20 ? C6 3BL 401 A 1 HETATM 8 C C24 3BL . . . B 2 -21.169 -44.405 2 1 20 ? C24 3BL 401 A 1 HETATM 9 C C23 3BL . . . B 2 -21.389 -42.92 1.821 1 20 ? C23 3BL 401 A 1 HETATM 10 C C25 3BL . . . B 2 -20.034 -42.266 2.013 1 20 ? C25 3BL 401 A 1 HETATM 11 C C26 3BL . . . B 2 -19.754 -41.034 1.235 1 20 ? C26 3BL 401 A 1 HETATM 12 N N3 3BL . . . B 2 -18.694 -40.266 1.417 1 20 ? N3 3BL 401 A 1 HETATM 13 C C28 3BL . . . B 2 -18.744 -39.273 0.551 1 20 ? C28 3BL 401 A 1 HETATM 14 N N2 3BL . . . B 2 -19.839 -39.395 -0.174 1 20 ? N2 3BL 401 A 1 HETATM 15 C C27 3BL . . . B 2 -20.483 -40.486 0.224 1 20 ? C27 3BL 401 A 1 HETATM 16 N N1 3BL . . . B 2 -22.287 -42.4 2.865 1 20 ? N1 3BL 401 A 1 HETATM 17 C C22 3BL . . . B 2 -23.633 -42.984 2.829 1 20 ? C22 3BL 401 A 1 HETATM 18 C C21 3BL . . . B 2 -24.663 -41.866 2.872 1 20 ? C21 3BL 401 A 1 HETATM 19 C C20 3BL . . . B 2 -24.759 -41.223 4.247 1 20 ? C20 3BL 401 A 1 HETATM 20 C C19 3BL . . . B 2 -25.281 -42.193 5.273 1 20 ? C19 3BL 401 A 1 HETATM 21 C C18 3BL . . . B 2 -25.399 -41.545 6.624 1 20 ? C18 3BL 401 A 1 HETATM 22 C C17 3BL . . . B 2 -26.004 -42.488 7.637 1 20 ? C17 3BL 401 A 1 HETATM 23 C C16 3BL . . . B 2 -27.323 -43.098 7.18 1 20 ? C16 3BL 401 A 1 HETATM 24 C C15 3BL . . . B 2 -27.184 -43.692 5.807 1 20 ? C15 3BL 401 A 1 HETATM 25 C C14 3BL . . . B 2 -26.61 -42.713 4.815 1 20 ? C14 3BL 401 A 1 HETATM 26 C C13 3BL . . . B 2 -26.352 -43.482 3.555 1 20 ? C13 3BL 401 A 1 HETATM 27 N N 3BL . . . B 2 -25.917 -42.539 2.571 1 20 ? N 3BL 401 A 1 HETATM 28 C C 3BL . . . B 2 -26.531 -42.309 1.448 1 20 ? C 3BL 401 A 1 HETATM 29 O O 3BL . . . B 2 -26.29 -41.358 0.778 1 20 ? O 3BL 401 A 1 HETATM 30 C C12 3BL . . . B 2 -28.655 -42.892 0.312 1 20 ? C12 3BL 401 A 1 HETATM 31 C C11 3BL . . . B 2 -29.566 -43.817 -0.146 1 20 ? C11 3BL 401 A 1 HETATM 32 C C10 3BL . . . B 2 -30.638 -47.269 0.113 1 20 ? C10 3BL 401 A 1 HETATM 33 C C9 3BL . . . B 2 -31.589 -48.096 -0.439 1 20 ? C9 3BL 401 A 1 HETATM 34 C C8 3BL . . . B 2 -32.258 -47.716 -1.574 1 20 ? C8 3BL 401 A 1 HETATM 35 C C7 3BL . . . B 2 -31.98 -46.516 -2.172 1 20 ? C7 3BL 401 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 45 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #