data_4TXT # _model_server_result.job_id i-GsHnfjJRYGUcUyls0Jrw _model_server_result.datetime_utc '2024-11-09 02:05:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4txt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":708}' # _entry.id 4TXT # _exptl.entry_id 4TXT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.36 _cell.angle_gamma 90 _cell.entry_id 4TXT _cell.length_a 116.348 _cell.length_b 57.348 _cell.length_c 105.598 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TXT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 BGC BGC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BGC BGC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC B 1 CTR 2 n B BGC 2 B 2 BGC B 1 CTR 2 n B BGC 3 B 3 BGC B 1 CTR # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O4 BGC . B BGC 1 1_555 B C1 BGC . B BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 sing covale ? covale2 B O4 BGC . B BGC 2 1_555 B C1 BGC . B BGC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 sing # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 139 n n C1 C2 EDO sing 140 n n C1 H11 EDO sing 141 n n C1 H12 EDO sing 142 n n O1 HO1 EDO sing 143 n n C2 O2 EDO sing 144 n n C2 H21 EDO sing 145 n n C2 H22 EDO sing 146 n n O2 HO2 EDO sing 147 n n # _atom_sites.entry_id 4TXT _atom_sites.fract_transf_matrix[1][1] 0.008595 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002042 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009733 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 701 1 EDO EDO . D 3 EDO A 1 702 2 EDO EDO . E 3 EDO A 1 703 3 EDO EDO . F 3 EDO A 1 704 4 EDO EDO . G 3 EDO A 1 705 5 EDO EDO . H 3 EDO A 1 706 6 EDO EDO . I 3 EDO A 1 707 7 EDO EDO . J 3 EDO A 1 708 8 EDO EDO . K 3 EDO A 1 709 9 EDO EDO . L 3 EDO A 1 710 10 EDO EDO . M 4 BTB A 1 711 1 BTB YBT . N 5 HOH A 1 801 116 HOH HOH . N 5 HOH A 2 802 100 HOH HOH . N 5 HOH A 3 803 59 HOH HOH . N 5 HOH A 4 804 84 HOH HOH . N 5 HOH A 5 805 122 HOH HOH . N 5 HOH A 6 806 88 HOH HOH . N 5 HOH A 7 807 4 HOH HOH . N 5 HOH A 8 808 121 HOH HOH . N 5 HOH A 9 809 86 HOH HOH . N 5 HOH A 10 810 70 HOH HOH . N 5 HOH A 11 811 95 HOH HOH . N 5 HOH A 12 812 69 HOH HOH . N 5 HOH A 13 813 124 HOH HOH . N 5 HOH A 14 814 133 HOH HOH . N 5 HOH A 15 815 7 HOH HOH . N 5 HOH A 16 816 25 HOH HOH . N 5 HOH A 17 817 151 HOH HOH . N 5 HOH A 18 818 114 HOH HOH . N 5 HOH A 19 819 147 HOH HOH . N 5 HOH A 20 820 101 HOH HOH . N 5 HOH A 21 821 65 HOH HOH . N 5 HOH A 22 822 141 HOH HOH . N 5 HOH A 23 823 1 HOH HOH . N 5 HOH A 24 824 2 HOH HOH . N 5 HOH A 25 825 3 HOH HOH . N 5 HOH A 26 826 5 HOH HOH . N 5 HOH A 27 827 6 HOH HOH . N 5 HOH A 28 828 8 HOH HOH . N 5 HOH A 29 829 9 HOH HOH . N 5 HOH A 30 830 10 HOH HOH . N 5 HOH A 31 831 11 HOH HOH . N 5 HOH A 32 832 12 HOH HOH . N 5 HOH A 33 833 13 HOH HOH . N 5 HOH A 34 834 14 HOH HOH . N 5 HOH A 35 835 15 HOH HOH . N 5 HOH A 36 836 16 HOH HOH . N 5 HOH A 37 837 17 HOH HOH . N 5 HOH A 38 838 18 HOH HOH . N 5 HOH A 39 839 19 HOH HOH . N 5 HOH A 40 840 20 HOH HOH . N 5 HOH A 41 841 21 HOH HOH . N 5 HOH A 42 842 22 HOH HOH . N 5 HOH A 43 843 23 HOH HOH . N 5 HOH A 44 844 24 HOH HOH . N 5 HOH A 45 845 26 HOH HOH . N 5 HOH A 46 846 27 HOH HOH . N 5 HOH A 47 847 28 HOH HOH . N 5 HOH A 48 848 29 HOH HOH . N 5 HOH A 49 849 30 HOH HOH . N 5 HOH A 50 850 31 HOH HOH . N 5 HOH A 51 851 32 HOH HOH . N 5 HOH A 52 852 33 HOH HOH . N 5 HOH A 53 853 34 HOH HOH . N 5 HOH A 54 854 35 HOH HOH . N 5 HOH A 55 855 36 HOH HOH . N 5 HOH A 56 856 37 HOH HOH . N 5 HOH A 57 857 38 HOH HOH . N 5 HOH A 58 858 39 HOH HOH . N 5 HOH A 59 859 40 HOH HOH . N 5 HOH A 60 860 41 HOH HOH . N 5 HOH A 61 861 42 HOH HOH . N 5 HOH A 62 862 43 HOH HOH . N 5 HOH A 63 863 44 HOH HOH . N 5 HOH A 64 864 45 HOH HOH . N 5 HOH A 65 865 46 HOH HOH . N 5 HOH A 66 866 47 HOH HOH . N 5 HOH A 67 867 48 HOH HOH . N 5 HOH A 68 868 49 HOH HOH . N 5 HOH A 69 869 50 HOH HOH . N 5 HOH A 70 870 51 HOH HOH . N 5 HOH A 71 871 52 HOH HOH . N 5 HOH A 72 872 53 HOH HOH . N 5 HOH A 73 873 54 HOH HOH . N 5 HOH A 74 874 55 HOH HOH . N 5 HOH A 75 875 56 HOH HOH . N 5 HOH A 76 876 57 HOH HOH . N 5 HOH A 77 877 58 HOH HOH . N 5 HOH A 78 878 60 HOH HOH . N 5 HOH A 79 879 61 HOH HOH . N 5 HOH A 80 880 62 HOH HOH . N 5 HOH A 81 881 63 HOH HOH . N 5 HOH A 82 882 64 HOH HOH . N 5 HOH A 83 883 66 HOH HOH . N 5 HOH A 84 884 67 HOH HOH . N 5 HOH A 85 885 68 HOH HOH . N 5 HOH A 86 886 71 HOH HOH . N 5 HOH A 87 887 72 HOH HOH . N 5 HOH A 88 888 73 HOH HOH . N 5 HOH A 89 889 74 HOH HOH . N 5 HOH A 90 890 75 HOH HOH . N 5 HOH A 91 891 76 HOH HOH . N 5 HOH A 92 892 77 HOH HOH . N 5 HOH A 93 893 78 HOH HOH . N 5 HOH A 94 894 79 HOH HOH . N 5 HOH A 95 895 80 HOH HOH . N 5 HOH A 96 896 81 HOH HOH . N 5 HOH A 97 897 82 HOH HOH . N 5 HOH A 98 898 83 HOH HOH . N 5 HOH A 99 899 85 HOH HOH . N 5 HOH A 100 900 87 HOH HOH . N 5 HOH A 101 901 89 HOH HOH . N 5 HOH A 102 902 90 HOH HOH . N 5 HOH A 103 903 91 HOH HOH . N 5 HOH A 104 904 92 HOH HOH . N 5 HOH A 105 905 93 HOH HOH . N 5 HOH A 106 906 94 HOH HOH . N 5 HOH A 107 907 96 HOH HOH . N 5 HOH A 108 908 97 HOH HOH . N 5 HOH A 109 909 98 HOH HOH . N 5 HOH A 110 910 99 HOH HOH . N 5 HOH A 111 911 102 HOH HOH . N 5 HOH A 112 912 103 HOH HOH . N 5 HOH A 113 913 104 HOH HOH . N 5 HOH A 114 914 105 HOH HOH . N 5 HOH A 115 915 106 HOH HOH . N 5 HOH A 116 916 107 HOH HOH . N 5 HOH A 117 917 108 HOH HOH . N 5 HOH A 118 918 109 HOH HOH . N 5 HOH A 119 919 110 HOH HOH . N 5 HOH A 120 920 111 HOH HOH . N 5 HOH A 121 921 112 HOH HOH . N 5 HOH A 122 922 113 HOH HOH . N 5 HOH A 123 923 115 HOH HOH . N 5 HOH A 124 924 117 HOH HOH . N 5 HOH A 125 925 118 HOH HOH . N 5 HOH A 126 926 119 HOH HOH . N 5 HOH A 127 927 120 HOH HOH . N 5 HOH A 128 928 123 HOH HOH . N 5 HOH A 129 929 125 HOH HOH . N 5 HOH A 130 930 126 HOH HOH . N 5 HOH A 131 931 127 HOH HOH . N 5 HOH A 132 932 128 HOH HOH . N 5 HOH A 133 933 129 HOH HOH . N 5 HOH A 134 934 130 HOH HOH . N 5 HOH A 135 935 131 HOH HOH . N 5 HOH A 136 936 132 HOH HOH . N 5 HOH A 137 937 134 HOH HOH . N 5 HOH A 138 938 135 HOH HOH . N 5 HOH A 139 939 136 HOH HOH . N 5 HOH A 140 940 137 HOH HOH . N 5 HOH A 141 941 138 HOH HOH . N 5 HOH A 142 942 139 HOH HOH . N 5 HOH A 143 943 140 HOH HOH . N 5 HOH A 144 944 142 HOH HOH . N 5 HOH A 145 945 143 HOH HOH . N 5 HOH A 146 946 144 HOH HOH . N 5 HOH A 147 947 145 HOH HOH . N 5 HOH A 148 948 146 HOH HOH . N 5 HOH A 149 949 148 HOH HOH . N 5 HOH A 150 950 149 HOH HOH . N 5 HOH A 151 951 150 HOH HOH . N 5 HOH A 152 952 152 HOH HOH . N 5 HOH A 153 953 153 HOH HOH . N 5 HOH A 154 954 154 HOH HOH . N 5 HOH A 155 955 155 HOH HOH . N 5 HOH A 156 956 156 HOH HOH . N 5 HOH A 157 957 157 HOH HOH . N 5 HOH A 158 958 158 HOH HOH . N 5 HOH A 159 959 159 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 3 -15.834 -6.917 43.718 1 54.53 ? C1 EDO 708 A 1 HETATM 2 O O1 EDO . . . J 3 -16.63 -5.775 43.376 1 56.48 ? O1 EDO 708 A 1 HETATM 3 C C2 EDO . . . J 3 -14.879 -7.21 42.567 1 55.11 ? C2 EDO 708 A 1 HETATM 4 O O2 EDO . . . J 3 -14.426 -8.569 42.618 1 58.94 ? O2 EDO 708 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #