data_4TXZ # _model_server_result.job_id TfkYWAflcKUyGcYFV4kCOA _model_server_result.datetime_utc '2025-02-27 17:15:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4txz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 4TXZ # _exptl.entry_id 4TXZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 521.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.04 _cell.angle_gamma 90 _cell.entry_id 4TXZ _cell.length_a 70.041 _cell.length_b 59.373 _cell.length_c 103.498 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TXZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 131 A ASP 132 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc2 A OD2 ASP 131 A ASP 132 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc3 A OD2 ASP 131 A ASP 132 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc4 A OD1 ASP 133 A ASP 134 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc5 A OD2 ASP 133 A ASP 134 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc6 A OD2 ASP 193 A ASP 194 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc7 D MG MG . A MG 502 1_555 E O2G G2P . A G2P 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc8 D MG MG . A MG 502 1_555 E O2B G2P . A G2P 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc9 B OD1 ASP 131 B ASP 132 1_555 F MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc10 B OD2 ASP 131 B ASP 132 1_555 G MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc11 B OD1 ASP 133 B ASP 134 1_555 F MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc12 B OD2 ASP 133 B ASP 134 1_555 G MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc13 B OD2 ASP 193 B ASP 194 1_555 F MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc14 G MG MG . B MG 502 1_555 H O2A G2P . B G2P 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc15 G MG MG . B MG 502 1_555 H O2G G2P . B G2P 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc16 G MG MG . B MG 502 1_555 H O2B G2P . B G2P 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? # _chem_comp.formula 'C11 H18 N5 O13 P3' _chem_comp.formula_weight 521.208 _chem_comp.id G2P _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G G2P sing 83 n n PG O2G G2P doub 84 n n PG O3G G2P sing 85 n n PG O3B G2P sing 86 n n O3B PB G2P sing 87 n n PB O1B G2P sing 88 n n PB O2B G2P doub 89 n n PB C3A G2P sing 90 n n C3A PA G2P sing 91 n n C3A H3A1 G2P sing 92 n n C3A H3A2 G2P sing 93 n n PA O1A G2P sing 94 n n PA O2A G2P doub 95 n n PA O5' G2P sing 96 n n O5' C5' G2P sing 97 n n C5' C4' G2P sing 98 n n C5' "H5'1" G2P sing 99 n n C5' "H5'2" G2P sing 100 n n C4' O4' G2P sing 101 n n C4' C3' G2P sing 102 n n C4' H4' G2P sing 103 n n O4' C1' G2P sing 104 n n C3' O3' G2P sing 105 n n C3' C2' G2P sing 106 n n C3' H3' G2P sing 107 n n O3' HA G2P sing 108 n n C2' O2' G2P sing 109 n n C2' C1' G2P sing 110 n n C2' H2' G2P sing 111 n n O2' HB G2P sing 112 n n C1' N9 G2P sing 113 n n C1' H1' G2P sing 114 n n N9 C8 G2P sing 115 n y N9 C4 G2P sing 116 n y C8 N7 G2P doub 117 n y C8 H8 G2P sing 118 n n N7 C5 G2P sing 119 n y C5 C6 G2P sing 120 n y C5 C4 G2P doub 121 n y C6 O6 G2P doub 122 n n C6 N1 G2P sing 123 n y N1 C2 G2P sing 124 n y N1 H1 G2P sing 125 n n C2 N2 G2P sing 126 n n C2 N3 G2P doub 127 n y N2 H2N1 G2P sing 128 n n N2 H2N2 G2P sing 129 n n N3 C4 G2P sing 130 n y HO1 O1G G2P sing 131 n n HO2 O3G G2P sing 132 n n HO3 O1A G2P sing 133 n n HO4 O1B G2P sing 134 n n # _atom_sites.entry_id 4TXZ _atom_sites.fract_transf_matrix[1][1] 0.014277 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00151 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016843 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009716 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 501 414 MG MG . D 2 MG A 1 502 415 MG MG . E 3 G2P A 1 503 416 G2P LIG . F 2 MG B 1 501 414 MG MG . G 2 MG B 1 502 415 MG MG . H 3 G2P B 1 503 416 G2P LIG . I 4 HOH A 1 601 3 HOH HOH . I 4 HOH A 2 602 1 HOH HOH . I 4 HOH A 3 603 2 HOH HOH . I 4 HOH A 4 604 4 HOH HOH . J 4 HOH B 1 601 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG G2P . . . E 3 -4.975 14.381 -43.448 1 63.1 ? PG G2P 503 A 1 HETATM 2 O O1G G2P . . . E 3 -3.496 14.643 -43.63 1 63.19 ? O1G G2P 503 A 1 HETATM 3 O O2G G2P . . . E 3 -5.518 13.675 -44.657 1 63.42 -1 O2G G2P 503 A 1 HETATM 4 O O3G G2P . . . E 3 -5.185 13.497 -42.221 1 63.06 -1 O3G G2P 503 A 1 HETATM 5 O O3B G2P . . . E 3 -5.755 15.756 -43.24 1 85.88 ? O3B G2P 503 A 1 HETATM 6 P PB G2P . . . E 3 -6.748 16.412 -44.345 1 74.13 ? PB G2P 503 A 1 HETATM 7 O O1B G2P . . . E 3 -6.492 17.904 -44.467 1 73.97 -1 O1B G2P 503 A 1 HETATM 8 O O2B G2P . . . E 3 -6.525 15.765 -45.692 1 74.53 ? O2B G2P 503 A 1 HETATM 9 C C3A G2P . . . E 3 -8.426 16.107 -43.768 1 59.34 ? C3A G2P 503 A 1 HETATM 10 P PA G2P . . . E 3 -9.428 14.914 -44.729 1 129.69 ? PA G2P 503 A 1 HETATM 11 O O1A G2P . . . E 3 -10.248 14.101 -43.762 1 129.81 -1 O1A G2P 503 A 1 HETATM 12 O O2A G2P . . . E 3 -8.534 13.964 -45.542 1 129.63 ? O2A G2P 503 A 1 HETATM 13 O O5' G2P . . . E 3 -10.433 15.734 -45.723 1 77.19 ? O5' G2P 503 A 1 HETATM 14 C C5' G2P . . . E 3 -9.886 16.323 -46.909 1 77.17 ? C5' G2P 503 A 1 HETATM 15 C C4' G2P . . . E 3 -10.855 17.309 -47.399 1 77.12 ? C4' G2P 503 A 1 HETATM 16 O O4' G2P . . . E 3 -12.252 16.899 -47.047 1 77.11 ? O4' G2P 503 A 1 HETATM 17 C C3' G2P . . . E 3 -10.681 18.601 -46.694 1 77.03 ? C3' G2P 503 A 1 HETATM 18 O O3' G2P . . . E 3 -9.702 19.411 -47.352 1 77.1 ? O3' G2P 503 A 1 HETATM 19 C C2' G2P . . . E 3 -12.011 19.222 -46.778 1 76.87 ? C2' G2P 503 A 1 HETATM 20 O O2' G2P . . . E 3 -12.155 19.945 -48.037 1 76.51 ? O2' G2P 503 A 1 HETATM 21 C C1' G2P . . . E 3 -12.965 18.13 -46.716 1 77.07 ? C1' G2P 503 A 1 HETATM 22 N N9 G2P . . . E 3 -13.53 18.059 -45.403 1 77.14 ? N9 G2P 503 A 1 HETATM 23 C C8 G2P . . . E 3 -13.231 17.161 -44.45 1 77 ? C8 G2P 503 A 1 HETATM 24 N N7 G2P . . . E 3 -13.963 17.422 -43.361 1 77.03 ? N7 G2P 503 A 1 HETATM 25 C C5 G2P . . . E 3 -14.755 18.517 -43.611 1 77.22 ? C5 G2P 503 A 1 HETATM 26 C C6 G2P . . . E 3 -15.705 19.227 -42.85 1 77.19 ? C6 G2P 503 A 1 HETATM 27 O O6 G2P . . . E 3 -15.962 18.884 -41.703 1 77.28 ? O6 G2P 503 A 1 HETATM 28 N N1 G2P . . . E 3 -16.319 20.273 -43.391 1 77.18 ? N1 G2P 503 A 1 HETATM 29 C C2 G2P . . . E 3 -16.034 20.644 -44.649 1 77.23 ? C2 G2P 503 A 1 HETATM 30 N N2 G2P . . . E 3 -16.698 21.757 -45.204 1 77.06 ? N2 G2P 503 A 1 HETATM 31 N N3 G2P . . . E 3 -15.134 19.984 -45.391 1 77.41 ? N3 G2P 503 A 1 HETATM 32 C C4 G2P . . . E 3 -14.478 18.909 -44.888 1 77.3 ? C4 G2P 503 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #