data_4TYI # _model_server_result.job_id YUZj1I1xncxbcQ8J1OCQIA _model_server_result.datetime_utc '2025-03-04 07:35:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4tyi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 4TYI # _exptl.entry_id 4TYI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.429 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-amino-5-fluoro-3-[5-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]quinolin-2(1H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4TYI _cell.length_a 65.9 _cell.length_b 65.9 _cell.length_c 182.262 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H21 F N6 O' _chem_comp.formula_weight 392.429 _chem_comp.id 38O _chem_comp.mon_nstd_flag . _chem_comp.name 4-amino-5-fluoro-3-[5-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]quinolin-2(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Dovitinib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 38O sing 1 n n C4 N5 38O sing 2 n n C3 N2 38O sing 3 n n F22 C21 38O sing 4 n n N2 C1 38O sing 5 n n N2 C7 38O sing 6 n n N5 C6 38O sing 7 n n N5 C8 38O sing 8 n n N19 C18 38O sing 9 n n C6 C7 38O sing 10 n n C9 C8 38O doub 11 n y C9 C10 38O sing 12 n y C8 C16 38O sing 13 n y C21 C23 38O doub 14 n y C21 C20 38O sing 15 n y N11 C10 38O sing 16 n y N11 C12 38O doub 17 n y C10 C14 38O doub 18 n y C23 C24 38O sing 19 n y C18 C20 38O sing 20 n n C18 C17 38O doub 21 n n C16 C15 38O doub 22 n y C20 C26 38O doub 23 n y C12 C17 38O sing 24 n n C12 N13 38O sing 25 n y C14 C15 38O sing 26 n y C14 N13 38O sing 27 n y C17 C28 38O sing 28 n n C24 C25 38O doub 29 n y C26 C25 38O sing 30 n y C26 N27 38O sing 31 n n C28 N27 38O sing 32 n n C28 O29 38O doub 33 n n C1 H1 38O sing 34 n n C1 H2 38O sing 35 n n C1 H3 38O sing 36 n n C3 H4 38O sing 37 n n C3 H5 38O sing 38 n n C4 H6 38O sing 39 n n C4 H7 38O sing 40 n n C6 H8 38O sing 41 n n C6 H9 38O sing 42 n n C7 H10 38O sing 43 n n C7 H11 38O sing 44 n n N13 H12 38O sing 45 n n C15 H13 38O sing 46 n n C16 H14 38O sing 47 n n C23 H15 38O sing 48 n n C24 H16 38O sing 49 n n C9 H18 38O sing 50 n n N19 H20 38O sing 51 n n N19 H21 38O sing 52 n n C25 H22 38O sing 53 n n N27 H23 38O sing 54 n n # _atom_sites.entry_id 4TYI _atom_sites.fract_transf_matrix[1][1] 0.015175 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015175 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005487 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 38O _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 801 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 38O _pdbx_nonpoly_scheme.auth_mon_id INX _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 38O . . . B 2 -3.399 -5.392 5.855 1 167.04 ? C1 38O 801 A 1 HETATM 2 C C3 38O . . . B 2 -2.708 -7.655 5.251 1 157.84 ? C3 38O 801 A 1 HETATM 3 C C4 38O . . . B 2 -1.488 -8.437 4.743 1 150.38 ? C4 38O 801 A 1 HETATM 4 C C6 38O . . . B 2 -0.045 -7.104 6.231 1 161.84 ? C6 38O 801 A 1 HETATM 5 C C7 38O . . . B 2 -1.268 -6.257 6.615 1 167.25 ? C7 38O 801 A 1 HETATM 6 C C8 38O . . . B 2 0.057 -9.672 6.398 1 137.22 ? C8 38O 801 A 1 HETATM 7 C C12 38O . . . B 2 0.358 -14.149 7.461 1 114.72 ? C12 38O 801 A 1 HETATM 8 N N13 38O . . . B 2 1.346 -13.36 7.875 1 119.29 ? N13 38O 801 A 1 HETATM 9 C C15 38O . . . B 2 1.796 -10.86 7.64 1 127.38 ? C15 38O 801 A 1 HETATM 10 C C16 38O . . . B 2 1.285 -9.699 7.103 1 130 ? C16 38O 801 A 1 HETATM 11 C C17 38O . . . B 2 0.271 -15.629 7.679 1 106.94 ? C17 38O 801 A 1 HETATM 12 C C18 38O . . . B 2 -0.538 -16.505 6.893 1 108.76 ? C18 38O 801 A 1 HETATM 13 C C21 38O . . . B 2 -1.306 -18.901 6.485 1 111.94 ? C21 38O 801 A 1 HETATM 14 C C23 38O . . . B 2 -1.258 -20.248 6.81 1 112.52 ? C23 38O 801 A 1 HETATM 15 C C24 38O . . . B 2 -0.444 -20.696 7.846 1 108.48 ? C24 38O 801 A 1 HETATM 16 O O29 38O . . . B 2 1.757 -15.527 9.418 1 115.28 ? O29 38O 801 A 1 HETATM 17 N N2 38O . . . B 2 -2.271 -6.279 5.538 1 169.17 ? N2 38O 801 A 1 HETATM 18 N N5 38O . . . B 2 -0.475 -8.47 5.832 1 150.06 ? N5 38O 801 A 1 HETATM 19 C C9 38O . . . B 2 -0.619 -10.894 6.264 1 132.57 ? C9 38O 801 A 1 HETATM 20 C C10 38O . . . B 2 -0.098 -12.067 6.794 1 126.66 ? C10 38O 801 A 1 HETATM 21 N N11 38O . . . B 2 -0.552 -13.362 6.792 1 123.93 ? N11 38O 801 A 1 HETATM 22 C C14 38O . . . B 2 1.115 -12.076 7.491 1 124.11 ? C14 38O 801 A 1 HETATM 23 N N19 38O . . . B 2 -1.326 -16.08 5.839 1 119.97 ? N19 38O 801 A 1 HETATM 24 C C20 38O . . . B 2 -0.528 -17.96 7.204 1 110.98 ? C20 38O 801 A 1 HETATM 25 F F22 38O . . . B 2 -2.106 -18.504 5.471 1 107.92 ? F22 38O 801 A 1 HETATM 26 C C25 38O . . . B 2 0.328 -19.8 8.567 1 110 ? C25 38O 801 A 1 HETATM 27 C C26 38O . . . B 2 0.295 -18.436 8.256 1 112.93 ? C26 38O 801 A 1 HETATM 28 N N27 38O . . . B 2 1.058 -17.543 8.98 1 110.86 ? N27 38O 801 A 1 HETATM 29 C C28 38O . . . B 2 1.051 -16.222 8.72 1 108.59 ? C28 38O 801 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #