data_4TYJ # _model_server_result.job_id a01eS8pXknR2Bfsmcl4e8A _model_server_result.datetime_utc '2024-12-04 06:52:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4tyj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 4TYJ # _exptl.entry_id 4TYJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 532.559 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-(imidazo[1,2-b]pyridazin-3-ylethynyl)-4-methyl-N-{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}benzam ide' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4TYJ _cell.length_a 66.281 _cell.length_b 66.281 _cell.length_c 176.033 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TYJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details Monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H27 F3 N6 O' _chem_comp.formula_weight 532.559 _chem_comp.id 0LI _chem_comp.mon_nstd_flag . _chem_comp.name '3-(imidazo[1,2-b]pyridazin-3-ylethynyl)-4-methyl-N-{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}benzam ide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Ponatinib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C84 0LI doub 1 n y N1 C1 0LI sing 2 n y N3 C20 0LI sing 3 n n N3 C21 0LI sing 4 n n N3 C24 0LI sing 5 n n C4 C5 0LI sing 6 n n C4 C3 0LI trip 7 n n C5 C6 0LI doub 8 n y C5 C10 0LI sing 9 n y C6 C7 0LI sing 10 n y C6 C11 0LI sing 11 n n C7 C8 0LI doub 12 n y C7 H7 0LI sing 13 n n C8 C9 0LI sing 14 n y C8 H8 0LI sing 15 n n C10 C9 0LI doub 16 n y C10 H10 0LI sing 17 n n C13 N2 0LI sing 18 n n C13 C14 0LI doub 19 n y C13 C18 0LI sing 20 n y C15 C14 0LI sing 21 n y C15 C16 0LI doub 22 n y C15 H15 0LI sing 23 n n C17 C16 0LI sing 24 n y C17 C18 0LI doub 25 n y C17 C19 0LI sing 26 n n C20 C16 0LI sing 27 n n C20 H20 0LI sing 28 n n C20 H20A 0LI sing 29 n n C21 C22 0LI sing 30 n n C21 H21 0LI sing 31 n n C21 H21A 0LI sing 32 n n C22 N4 0LI sing 33 n n C22 H22 0LI sing 34 n n C22 H22A 0LI sing 35 n n C24 C23 0LI sing 36 n n C24 H24 0LI sing 37 n n C24 H24A 0LI sing 38 n n C81 C82 0LI doub 39 n y C81 C84 0LI sing 40 n y C81 H81 0LI sing 41 n n C82 C83 0LI sing 42 n y C82 H82 0LI sing 43 n n C83 N81 0LI doub 44 n y C83 H83 0LI sing 45 n n N81 N82 0LI sing 46 n y N82 C84 0LI sing 47 n y N82 C2 0LI sing 48 n y C1 C2 0LI doub 49 n y C1 H1 0LI sing 50 n n C2 C3 0LI sing 51 n n C9 C12 0LI sing 52 n n C11 H11 0LI sing 53 n n C11 H11A 0LI sing 54 n n C11 H11B 0LI sing 55 n n C12 O1 0LI doub 56 n n C12 N2 0LI sing 57 n n N2 HN2 0LI sing 58 n n C14 H14 0LI sing 59 n n C18 H18 0LI sing 60 n n C19 F1 0LI sing 61 n n C19 F2 0LI sing 62 n n C19 F3 0LI sing 63 n n C23 N4 0LI sing 64 n n C23 H23 0LI sing 65 n n C23 H23A 0LI sing 66 n n C25 N4 0LI sing 67 n n C25 H25 0LI sing 68 n n C25 H25A 0LI sing 69 n n C25 H25B 0LI sing 70 n n # _atom_sites.entry_id 4TYJ _atom_sites.fract_transf_matrix[1][1] 0.015087 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015087 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005681 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0LI A 1 801 1 0LI INX . C 3 EDO A 1 802 1 EDO EDO . D 4 PO4 A 1 803 2 PO4 PO4 . E 4 PO4 A 1 804 3 PO4 PO4 . F 5 HOH A 1 901 35 HOH HOH . F 5 HOH A 2 902 27 HOH HOH . F 5 HOH A 3 903 53 HOH HOH . F 5 HOH A 4 904 13 HOH HOH . F 5 HOH A 5 905 21 HOH HOH . F 5 HOH A 6 906 49 HOH HOH . F 5 HOH A 7 907 2 HOH HOH . F 5 HOH A 8 908 43 HOH HOH . F 5 HOH A 9 909 18 HOH HOH . F 5 HOH A 10 910 34 HOH HOH . F 5 HOH A 11 911 4 HOH HOH . F 5 HOH A 12 912 9 HOH HOH . F 5 HOH A 13 913 50 HOH HOH . F 5 HOH A 14 914 7 HOH HOH . F 5 HOH A 15 915 30 HOH HOH . F 5 HOH A 16 916 52 HOH HOH . F 5 HOH A 17 917 1 HOH HOH . F 5 HOH A 18 918 3 HOH HOH . F 5 HOH A 19 919 5 HOH HOH . F 5 HOH A 20 920 6 HOH HOH . F 5 HOH A 21 921 8 HOH HOH . F 5 HOH A 22 922 10 HOH HOH . F 5 HOH A 23 923 11 HOH HOH . F 5 HOH A 24 924 12 HOH HOH . F 5 HOH A 25 925 14 HOH HOH . F 5 HOH A 26 926 15 HOH HOH . F 5 HOH A 27 927 16 HOH HOH . F 5 HOH A 28 928 17 HOH HOH . F 5 HOH A 29 929 19 HOH HOH . F 5 HOH A 30 930 20 HOH HOH . F 5 HOH A 31 931 22 HOH HOH . F 5 HOH A 32 932 23 HOH HOH . F 5 HOH A 33 933 24 HOH HOH . F 5 HOH A 34 934 25 HOH HOH . F 5 HOH A 35 935 26 HOH HOH . F 5 HOH A 36 936 28 HOH HOH . F 5 HOH A 37 937 29 HOH HOH . F 5 HOH A 38 938 31 HOH HOH . F 5 HOH A 39 939 32 HOH HOH . F 5 HOH A 40 940 33 HOH HOH . F 5 HOH A 41 941 36 HOH HOH . F 5 HOH A 42 942 37 HOH HOH . F 5 HOH A 43 943 38 HOH HOH . F 5 HOH A 44 944 39 HOH HOH . F 5 HOH A 45 945 40 HOH HOH . F 5 HOH A 46 946 41 HOH HOH . F 5 HOH A 47 947 42 HOH HOH . F 5 HOH A 48 948 44 HOH HOH . F 5 HOH A 49 949 45 HOH HOH . F 5 HOH A 50 950 46 HOH HOH . F 5 HOH A 51 951 47 HOH HOH . F 5 HOH A 52 952 48 HOH HOH . F 5 HOH A 53 953 51 HOH HOH . F 5 HOH A 54 954 54 HOH HOH . F 5 HOH A 55 955 55 HOH HOH . F 5 HOH A 56 956 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 0LI . . . B 2 17.66 -13.825 11.822 1 46.84 ? N1 0LI 801 A 1 HETATM 2 N N3 0LI . . . B 2 28.887 -4.775 4.357 1 38.29 ? N3 0LI 801 A 1 HETATM 3 C C4 0LI . . . B 2 22.13 -12.393 11.328 1 43.57 ? C4 0LI 801 A 1 HETATM 4 C C5 0LI . . . B 2 23.417 -11.759 11.35 1 44.9 ? C5 0LI 801 A 1 HETATM 5 C C6 0LI . . . B 2 24.357 -11.928 12.383 1 44.57 ? C6 0LI 801 A 1 HETATM 6 C C7 0LI . . . B 2 25.57 -11.267 12.297 1 42.33 ? C7 0LI 801 A 1 HETATM 7 C C8 0LI . . . B 2 25.87 -10.447 11.219 1 40.6 ? C8 0LI 801 A 1 HETATM 8 C C10 0LI . . . B 2 23.721 -10.927 10.257 1 44.55 ? C10 0LI 801 A 1 HETATM 9 C C13 0LI . . . B 2 26.522 -7.486 8.031 1 45.13 ? C13 0LI 801 A 1 HETATM 10 C C15 0LI . . . B 2 28.172 -6.334 6.688 1 43.2 ? C15 0LI 801 A 1 HETATM 11 C C17 0LI . . . B 2 25.846 -5.74 6.475 1 44.1 ? C17 0LI 801 A 1 HETATM 12 C C20 0LI . . . B 2 27.595 -4.524 5.022 1 39.15 ? C20 0LI 801 A 1 HETATM 13 C C21 0LI . . . B 2 29.421 -3.534 3.756 1 41.73 ? C21 0LI 801 A 1 HETATM 14 C C22 0LI . . . B 2 30.762 -3.789 3.058 1 41.71 ? C22 0LI 801 A 1 HETATM 15 C C24 0LI . . . B 2 28.778 -5.849 3.356 1 36.93 ? C24 0LI 801 A 1 HETATM 16 C C81 0LI . . . B 2 17.306 -15.934 10.533 1 48.83 ? C81 0LI 801 A 1 HETATM 17 C C82 0LI . . . B 2 17.962 -16.824 9.728 1 53.21 ? C82 0LI 801 A 1 HETATM 18 C C83 0LI . . . B 2 19.322 -16.649 9.411 1 54.4 ? C83 0LI 801 A 1 HETATM 19 N N81 0LI . . . B 2 19.992 -15.624 9.882 1 48.41 ? N81 0LI 801 A 1 HETATM 20 N N82 0LI . . . B 2 19.353 -14.688 10.708 1 45.71 ? N82 0LI 801 A 1 HETATM 21 C C84 0LI . . . B 2 18.02 -14.83 11.039 1 48.08 ? C84 0LI 801 A 1 HETATM 22 C C1 0LI . . . B 2 18.702 -13.033 12.015 1 46.95 ? C1 0LI 801 A 1 HETATM 23 C C2 0LI . . . B 2 19.787 -13.541 11.328 1 46.85 ? C2 0LI 801 A 1 HETATM 24 C C3 0LI . . . B 2 21.084 -12.933 11.347 1 44.1 ? C3 0LI 801 A 1 HETATM 25 C C9 0LI . . . B 2 24.952 -10.258 10.164 1 40.68 ? C9 0LI 801 A 1 HETATM 26 C C11 0LI . . . B 2 24.076 -12.81 13.572 1 40.34 ? C11 0LI 801 A 1 HETATM 27 C C12 0LI . . . B 2 25.223 -9.361 8.995 1 44.92 ? C12 0LI 801 A 1 HETATM 28 O O1 0LI . . . B 2 24.531 -9.464 7.999 1 47.76 ? O1 0LI 801 A 1 HETATM 29 N N2 0LI . . . B 2 26.204 -8.413 9.043 1 46.59 ? N2 0LI 801 A 1 HETATM 30 C C14 0LI . . . B 2 27.847 -7.277 7.653 1 45.97 ? C14 0LI 801 A 1 HETATM 31 C C16 0LI . . . B 2 27.189 -5.554 6.074 1 40.99 ? C16 0LI 801 A 1 HETATM 32 C C18 0LI . . . B 2 25.534 -6.693 7.449 1 42.25 ? C18 0LI 801 A 1 HETATM 33 C C19 0LI . . . B 2 24.706 -4.941 5.872 1 42.98 ? C19 0LI 801 A 1 HETATM 34 F F1 0LI . . . B 2 23.488 -5.178 6.522 1 48.85 ? F1 0LI 801 A 1 HETATM 35 F F2 0LI . . . B 2 24.988 -3.573 5.925 1 43.91 ? F2 0LI 801 A 1 HETATM 36 F F3 0LI . . . B 2 24.571 -5.325 4.542 1 45.5 ? F3 0LI 801 A 1 HETATM 37 C C23 0LI . . . B 2 30.153 -6.107 2.729 1 42.74 ? C23 0LI 801 A 1 HETATM 38 C C25 0LI . . . B 2 31.848 -5.082 1.316 1 47.13 ? C25 0LI 801 A 1 HETATM 39 N N4 0LI . . . B 2 30.607 -4.868 2.071 1 48.22 ? N4 0LI 801 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 39 #