data_4U00
#
_model_server_result.job_id            3yYwSueHK843Ni0r_mlU1w 
_model_server_result.datetime_utc      '2024-12-27 01:55:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4u00 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    4U00 
#
_exptl.entry_id    4U00 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.48 
_cell.angle_gamma         90 
_cell.entry_id            4U00 
_cell.length_a            32.107 
_cell.length_b            81.37 
_cell.length_c            49.338 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4U00 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 44 A SER 44 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc2 B O1B ADP . A ADP 301 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc3 D MG MG . A MG 303 1_555 F O HOH . A HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc4 D MG MG . A MG 303 1_555 F O HOH . A HOH 423 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc5 D MG MG . A MG 303 1_555 F O HOH . A HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc6 D MG MG . A MG 303 1_555 F O HOH . A HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc7 D MG MG . A MG 303 1_555 F O HOH . A HOH 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc8 D MG MG . A MG 303 1_555 F O HOH . A HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc9 E MG MG . A MG 304 1_555 F O HOH . A HOH 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc10 E MG MG . A MG 304 1_555 F O HOH . A HOH 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc11 E MG MG . A MG 304 1_555 F O HOH . A HOH 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc12 E MG MG . A MG 304 1_555 F O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     4U00 
_atom_sites.fract_transf_matrix[1][1]    0.031146 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008043 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01229 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020933 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 301 1 ADP ADP . 
C 3 CL A 1 302 1 CL CL . 
D 4 MG A 1 303 1 MG MG . 
E 4 MG A 1 304 1 MG MG . 
F 5 HOH A 1 401 21 HOH HOH . 
F 5 HOH A 2 402 95 HOH HOH . 
F 5 HOH A 3 403 80 HOH HOH . 
F 5 HOH A 4 404 13 HOH HOH . 
F 5 HOH A 5 405 11 HOH HOH . 
F 5 HOH A 6 406 77 HOH HOH . 
F 5 HOH A 7 407 105 HOH HOH . 
F 5 HOH A 8 408 3 HOH HOH . 
F 5 HOH A 9 409 49 HOH HOH . 
F 5 HOH A 10 410 31 HOH HOH . 
F 5 HOH A 11 411 103 HOH HOH . 
F 5 HOH A 12 412 46 HOH HOH . 
F 5 HOH A 13 413 44 HOH HOH . 
F 5 HOH A 14 414 19 HOH HOH . 
F 5 HOH A 15 415 88 HOH HOH . 
F 5 HOH A 16 416 35 HOH HOH . 
F 5 HOH A 17 417 106 HOH HOH . 
F 5 HOH A 18 418 55 HOH HOH . 
F 5 HOH A 19 419 59 HOH HOH . 
F 5 HOH A 20 420 22 HOH HOH . 
F 5 HOH A 21 421 34 HOH HOH . 
F 5 HOH A 22 422 64 HOH HOH . 
F 5 HOH A 23 423 113 HOH HOH . 
F 5 HOH A 24 424 99 HOH HOH . 
F 5 HOH A 25 425 20 HOH HOH . 
F 5 HOH A 26 426 76 HOH HOH . 
F 5 HOH A 27 427 24 HOH HOH . 
F 5 HOH A 28 428 114 HOH HOH . 
F 5 HOH A 29 429 127 HOH HOH . 
F 5 HOH A 30 430 43 HOH HOH . 
F 5 HOH A 31 431 67 HOH HOH . 
F 5 HOH A 32 432 29 HOH HOH . 
F 5 HOH A 33 433 110 HOH HOH . 
F 5 HOH A 34 434 130 HOH HOH . 
F 5 HOH A 35 435 66 HOH HOH . 
F 5 HOH A 36 436 5 HOH HOH . 
F 5 HOH A 37 437 58 HOH HOH . 
F 5 HOH A 38 438 94 HOH HOH . 
F 5 HOH A 39 439 37 HOH HOH . 
F 5 HOH A 40 440 89 HOH HOH . 
F 5 HOH A 41 441 81 HOH HOH . 
F 5 HOH A 42 442 84 HOH HOH . 
F 5 HOH A 43 443 107 HOH HOH . 
F 5 HOH A 44 444 98 HOH HOH . 
F 5 HOH A 45 445 52 HOH HOH . 
F 5 HOH A 46 446 123 HOH HOH . 
F 5 HOH A 47 447 93 HOH HOH . 
F 5 HOH A 48 448 91 HOH HOH . 
F 5 HOH A 49 449 97 HOH HOH . 
F 5 HOH A 50 450 85 HOH HOH . 
F 5 HOH A 51 451 68 HOH HOH . 
F 5 HOH A 52 452 74 HOH HOH . 
F 5 HOH A 53 453 132 HOH HOH . 
F 5 HOH A 54 454 1 HOH HOH . 
F 5 HOH A 55 455 4 HOH HOH . 
F 5 HOH A 56 456 6 HOH HOH . 
F 5 HOH A 57 457 7 HOH HOH . 
F 5 HOH A 58 458 8 HOH HOH . 
F 5 HOH A 59 459 9 HOH HOH . 
F 5 HOH A 60 460 10 HOH HOH . 
F 5 HOH A 61 461 12 HOH HOH . 
F 5 HOH A 62 462 14 HOH HOH . 
F 5 HOH A 63 463 15 HOH HOH . 
F 5 HOH A 64 464 16 HOH HOH . 
F 5 HOH A 65 465 17 HOH HOH . 
F 5 HOH A 66 466 18 HOH HOH . 
F 5 HOH A 67 467 23 HOH HOH . 
F 5 HOH A 68 468 25 HOH HOH . 
F 5 HOH A 69 469 26 HOH HOH . 
F 5 HOH A 70 470 27 HOH HOH . 
F 5 HOH A 71 471 28 HOH HOH . 
F 5 HOH A 72 472 30 HOH HOH . 
F 5 HOH A 73 473 33 HOH HOH . 
F 5 HOH A 74 474 36 HOH HOH . 
F 5 HOH A 75 475 38 HOH HOH . 
F 5 HOH A 76 476 39 HOH HOH . 
F 5 HOH A 77 477 40 HOH HOH . 
F 5 HOH A 78 478 41 HOH HOH . 
F 5 HOH A 79 479 42 HOH HOH . 
F 5 HOH A 80 480 45 HOH HOH . 
F 5 HOH A 81 481 47 HOH HOH . 
F 5 HOH A 82 482 48 HOH HOH . 
F 5 HOH A 83 483 50 HOH HOH . 
F 5 HOH A 84 484 51 HOH HOH . 
F 5 HOH A 85 485 53 HOH HOH . 
F 5 HOH A 86 486 54 HOH HOH . 
F 5 HOH A 87 487 56 HOH HOH . 
F 5 HOH A 88 488 57 HOH HOH . 
F 5 HOH A 89 489 60 HOH HOH . 
F 5 HOH A 90 490 61 HOH HOH . 
F 5 HOH A 91 491 62 HOH HOH . 
F 5 HOH A 92 492 63 HOH HOH . 
F 5 HOH A 93 493 65 HOH HOH . 
F 5 HOH A 94 494 69 HOH HOH . 
F 5 HOH A 95 495 70 HOH HOH . 
F 5 HOH A 96 496 71 HOH HOH . 
F 5 HOH A 97 497 72 HOH HOH . 
F 5 HOH A 98 498 73 HOH HOH . 
F 5 HOH A 99 499 75 HOH HOH . 
F 5 HOH A 100 500 78 HOH HOH . 
F 5 HOH A 101 501 79 HOH HOH . 
F 5 HOH A 102 502 82 HOH HOH . 
F 5 HOH A 103 503 83 HOH HOH . 
F 5 HOH A 104 504 86 HOH HOH . 
F 5 HOH A 105 505 87 HOH HOH . 
F 5 HOH A 106 506 90 HOH HOH . 
F 5 HOH A 107 507 92 HOH HOH . 
F 5 HOH A 108 508 96 HOH HOH . 
F 5 HOH A 109 509 100 HOH HOH . 
F 5 HOH A 110 510 101 HOH HOH . 
F 5 HOH A 111 511 104 HOH HOH . 
F 5 HOH A 112 512 109 HOH HOH . 
F 5 HOH A 113 513 111 HOH HOH . 
F 5 HOH A 114 514 112 HOH HOH . 
F 5 HOH A 115 515 115 HOH HOH . 
F 5 HOH A 116 516 116 HOH HOH . 
F 5 HOH A 117 517 117 HOH HOH . 
F 5 HOH A 118 518 118 HOH HOH . 
F 5 HOH A 119 519 119 HOH HOH . 
F 5 HOH A 120 520 120 HOH HOH . 
F 5 HOH A 121 521 121 HOH HOH . 
F 5 HOH A 122 522 122 HOH HOH . 
F 5 HOH A 123 523 124 HOH HOH . 
F 5 HOH A 124 524 125 HOH HOH . 
F 5 HOH A 125 525 126 HOH HOH . 
F 5 HOH A 126 526 128 HOH HOH . 
F 5 HOH A 127 527 129 HOH HOH . 
F 5 HOH A 128 528 131 HOH HOH . 
F 5 HOH A 129 529 133 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . B 2 8.123 1.545 15.571 1 17.89 ? PB ADP 301 A 1 
HETATM 2 O O1B ADP . . . B 2 7.655 0.617 14.476 1 19.23 ? O1B ADP 301 A 1 
HETATM 3 O O2B ADP . . . B 2 8.83 2.755 15.027 1 19.65 ? O2B ADP 301 A 1 
HETATM 4 O O3B ADP . . . B 2 7.072 1.925 16.592 1 17.46 ? O3B ADP 301 A 1 
HETATM 5 P PA ADP . . . B 2 9.896 -0.73 16.096 1 16.84 ? PA ADP 301 A 1 
HETATM 6 O O1A ADP . . . B 2 10.354 -0.843 14.671 1 16.92 ? O1A ADP 301 A 1 
HETATM 7 O O2A ADP . . . B 2 9.019 -1.822 16.638 1 18.86 ? O2A ADP 301 A 1 
HETATM 8 O O3A ADP . . . B 2 9.231 0.717 16.44 1 20.44 ? O3A ADP 301 A 1 
HETATM 9 O O5' ADP . . . B 2 11.222 -0.634 17.008 1 19.7 ? O5' ADP 301 A 1 
HETATM 10 C C5' ADP . . . B 2 11.188 -0.637 18.437 1 21.67 ? C5' ADP 301 A 1 
HETATM 11 C C4' ADP . . . B 2 12.612 -0.468 18.964 1 22.34 ? C4' ADP 301 A 1 
HETATM 12 O O4' ADP . . . B 2 13.336 -1.687 18.786 1 21.43 ? O4' ADP 301 A 1 
HETATM 13 C C3' ADP . . . B 2 13.397 0.607 18.235 1 22.7 ? C3' ADP 301 A 1 
HETATM 14 O O3' ADP . . . B 2 14.196 1.26 19.227 1 23.73 ? O3' ADP 301 A 1 
HETATM 15 C C2' ADP . . . B 2 14.303 -0.145 17.271 1 22.37 ? C2' ADP 301 A 1 
HETATM 16 O O2' ADP . . . B 2 15.552 0.529 17.067 1 19.36 ? O2' ADP 301 A 1 
HETATM 17 C C1' ADP . . . B 2 14.5 -1.472 17.978 1 21.81 ? C1' ADP 301 A 1 
HETATM 18 N N9 ADP . . . B 2 14.576 -2.64 17.069 1 21.32 ? N9 ADP 301 A 1 
HETATM 19 C C8 ADP . . . B 2 13.67 -2.959 16.125 1 18.78 ? C8 ADP 301 A 1 
HETATM 20 N N7 ADP . . . B 2 14.03 -4.107 15.496 1 18.46 ? N7 ADP 301 A 1 
HETATM 21 C C5 ADP . . . B 2 15.177 -4.544 16.049 1 18.25 ? C5 ADP 301 A 1 
HETATM 22 C C6 ADP . . . B 2 16.086 -5.7 15.86 1 19.18 ? C6 ADP 301 A 1 
HETATM 23 N N6 ADP . . . B 2 15.838 -6.649 14.913 1 21.21 ? N6 ADP 301 A 1 
HETATM 24 N N1 ADP . . . B 2 17.176 -5.77 16.662 1 15.73 ? N1 ADP 301 A 1 
HETATM 25 C C2 ADP . . . B 2 17.447 -4.83 17.581 1 15.93 ? C2 ADP 301 A 1 
HETATM 26 N N3 ADP . . . B 2 16.667 -3.765 17.819 1 17.61 ? N3 ADP 301 A 1 
HETATM 27 C C4 ADP . . . B 2 15.536 -3.566 17.09 1 19.5 ? C4 ADP 301 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#