data_4U0F # _model_server_result.job_id UH4w0ztc5hlF-CnIRemhPg _model_server_result.datetime_utc '2024-12-24 17:45:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u0f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4U0F # _exptl.entry_id 4U0F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4U0F _cell.length_a 90.88 _cell.length_b 90.88 _cell.length_c 56.58 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U0F _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details Hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_675 -y+1,x-y+2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 157.408777 0 3 'crystal symmetry operation' 3_465 -x+y-1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -136.32 78.704389 0 4 'crystal symmetry operation' 4_575 -x,-y+2,z -1 0 0 0 -1 0 0 0 1 -90.88 157.408777 0 5 'crystal symmetry operation' 5_455 y-1,-x+y,z 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 -90.88 0 0 6 'crystal symmetry operation' 6_665 x-y+1,x+1,z 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 45.44 78.704389 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 A SG CYS 45 A CYS 45 5_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.975 ? disulf ? disulf2 A SG CYS 198 A CYS 198 1_555 A SG CYS 218 A CYS 218 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 121 n n C1 C2 EDO sing 122 n n C1 H11 EDO sing 123 n n C1 H12 EDO sing 124 n n O1 HO1 EDO sing 125 n n C2 O2 EDO sing 126 n n C2 H21 EDO sing 127 n n C2 H22 EDO sing 128 n n O2 HO2 EDO sing 129 n n # _atom_sites.entry_id 4U0F _atom_sites.fract_transf_matrix[1][1] 0.011004 _atom_sites.fract_transf_matrix[1][2] 0.006353 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 1 EDO EDO . C 3 3A8 A 1 302 1 3A8 DRG . D 4 HOH A 1 401 46 HOH HOH . D 4 HOH A 2 402 1 HOH HOH . D 4 HOH A 3 403 45 HOH HOH . D 4 HOH A 4 404 14 HOH HOH . D 4 HOH A 5 405 16 HOH HOH . D 4 HOH A 6 406 7 HOH HOH . D 4 HOH A 7 407 30 HOH HOH . D 4 HOH A 8 408 55 HOH HOH . D 4 HOH A 9 409 32 HOH HOH . D 4 HOH A 10 410 8 HOH HOH . D 4 HOH A 11 411 5 HOH HOH . D 4 HOH A 12 412 6 HOH HOH . D 4 HOH A 13 413 67 HOH HOH . D 4 HOH A 14 414 24 HOH HOH . D 4 HOH A 15 415 23 HOH HOH . D 4 HOH A 16 416 53 HOH HOH . D 4 HOH A 17 417 62 HOH HOH . D 4 HOH A 18 418 49 HOH HOH . D 4 HOH A 19 419 50 HOH HOH . D 4 HOH A 20 420 44 HOH HOH . D 4 HOH A 21 421 11 HOH HOH . D 4 HOH A 22 422 3 HOH HOH . D 4 HOH A 23 423 66 HOH HOH . D 4 HOH A 24 424 9 HOH HOH . D 4 HOH A 25 425 20 HOH HOH . D 4 HOH A 26 426 36 HOH HOH . D 4 HOH A 27 427 58 HOH HOH . D 4 HOH A 28 428 37 HOH HOH . D 4 HOH A 29 429 27 HOH HOH . D 4 HOH A 30 430 57 HOH HOH . D 4 HOH A 31 431 19 HOH HOH . D 4 HOH A 32 432 54 HOH HOH . D 4 HOH A 33 433 2 HOH HOH . D 4 HOH A 34 434 4 HOH HOH . D 4 HOH A 35 435 10 HOH HOH . D 4 HOH A 36 436 12 HOH HOH . D 4 HOH A 37 437 13 HOH HOH . D 4 HOH A 38 438 15 HOH HOH . D 4 HOH A 39 439 17 HOH HOH . D 4 HOH A 40 440 18 HOH HOH . D 4 HOH A 41 441 21 HOH HOH . D 4 HOH A 42 442 22 HOH HOH . D 4 HOH A 43 443 25 HOH HOH . D 4 HOH A 44 444 26 HOH HOH . D 4 HOH A 45 445 28 HOH HOH . D 4 HOH A 46 446 29 HOH HOH . D 4 HOH A 47 447 31 HOH HOH . D 4 HOH A 48 448 33 HOH HOH . D 4 HOH A 49 449 34 HOH HOH . D 4 HOH A 50 450 35 HOH HOH . D 4 HOH A 51 451 38 HOH HOH . D 4 HOH A 52 452 39 HOH HOH . D 4 HOH A 53 453 40 HOH HOH . D 4 HOH A 54 454 41 HOH HOH . D 4 HOH A 55 455 42 HOH HOH . D 4 HOH A 56 456 43 HOH HOH . D 4 HOH A 57 457 47 HOH HOH . D 4 HOH A 58 458 48 HOH HOH . D 4 HOH A 59 459 51 HOH HOH . D 4 HOH A 60 460 52 HOH HOH . D 4 HOH A 61 461 56 HOH HOH . D 4 HOH A 62 462 59 HOH HOH . D 4 HOH A 63 463 60 HOH HOH . D 4 HOH A 64 464 61 HOH HOH . D 4 HOH A 65 465 63 HOH HOH . D 4 HOH A 66 466 64 HOH HOH . D 4 HOH A 67 467 65 HOH HOH . D 4 HOH A 68 468 68 HOH HOH . D 4 HOH A 69 469 69 HOH HOH . D 4 HOH A 70 470 70 HOH HOH . D 4 HOH A 71 471 71 HOH HOH . D 4 HOH A 72 472 72 HOH HOH . D 4 HOH A 73 473 73 HOH HOH . D 4 HOH A 74 474 74 HOH HOH . D 4 HOH A 75 475 75 HOH HOH . D 4 HOH A 76 476 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 -10.94 84.255 7.814 1 39.43 ? C1 EDO 301 A 1 HETATM 2 O O1 EDO . . . B 2 -10.456 83.385 8.845 1 43.57 ? O1 EDO 301 A 1 HETATM 3 C C2 EDO . . . B 2 -10.528 85.687 8.127 1 36.61 ? C2 EDO 301 A 1 HETATM 4 O O2 EDO . . . B 2 -9.123 85.851 7.917 1 37.73 ? O2 EDO 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 4 #