data_4U0O # _model_server_result.job_id IP6dwosjmow9f6ejxVznDw _model_server_result.datetime_utc '2024-12-26 11:31:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u0o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4U0O # _exptl.entry_id 4U0O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4U0O _cell.length_a 70.88 _cell.length_b 162.8 _cell.length_c 58.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U0O _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 37 B CYS 37 1_555 C FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc2 A SG CYS 42 B CYS 42 1_555 C FE3 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc3 A SG CYS 48 B CYS 48 1_555 C FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc4 A SG CYS 63 B CYS 63 1_555 B FE4 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc5 A SG CYS 67 B CYS 67 1_555 B FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc6 A SG CYS 70 B CYS 70 1_555 B FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc7 A OG SER 283 B SER 283 1_555 C FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? metalc ? metalc8 B FE1 SF4 . B SF4 301 1_555 D S4 DTT . B DTT 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 83 n n S1 HS1 DTT sing 84 n n C1 C2 DTT sing 85 n n C1 H11 DTT sing 86 n n C1 H12 DTT sing 87 n n C2 O2 DTT sing 88 n n C2 C3 DTT sing 89 n n C2 H2 DTT sing 90 n n O2 HO2 DTT sing 91 n n C3 O3 DTT sing 92 n n C3 C4 DTT sing 93 n n C3 H3 DTT sing 94 n n O3 HO3 DTT sing 95 n n C4 S4 DTT sing 96 n n C4 H41 DTT sing 97 n n C4 H42 DTT sing 98 n n S4 HS2 DTT sing 99 n n # _atom_sites.entry_id 4U0O _atom_sites.fract_transf_matrix[1][1] 0.014108 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 B 1 301 290 SF4 SF4 . C 2 SF4 B 1 302 291 SF4 SF4 . D 3 DTT B 1 303 1 DTT DTT . E 4 MTA B 1 304 1 MTA MTA . F 5 HOH B 1 401 142 HOH HOH . F 5 HOH B 2 402 175 HOH HOH . F 5 HOH B 3 403 64 HOH HOH . F 5 HOH B 4 404 133 HOH HOH . F 5 HOH B 5 405 48 HOH HOH . F 5 HOH B 6 406 26 HOH HOH . F 5 HOH B 7 407 75 HOH HOH . F 5 HOH B 8 408 99 HOH HOH . F 5 HOH B 9 409 33 HOH HOH . F 5 HOH B 10 410 115 HOH HOH . F 5 HOH B 11 411 63 HOH HOH . F 5 HOH B 12 412 47 HOH HOH . F 5 HOH B 13 413 82 HOH HOH . F 5 HOH B 14 414 112 HOH HOH . F 5 HOH B 15 415 27 HOH HOH . F 5 HOH B 16 416 139 HOH HOH . F 5 HOH B 17 417 60 HOH HOH . F 5 HOH B 18 418 126 HOH HOH . F 5 HOH B 19 419 18 HOH HOH . F 5 HOH B 20 420 95 HOH HOH . F 5 HOH B 21 421 159 HOH HOH . F 5 HOH B 22 422 119 HOH HOH . F 5 HOH B 23 423 32 HOH HOH . F 5 HOH B 24 424 49 HOH HOH . F 5 HOH B 25 425 78 HOH HOH . F 5 HOH B 26 426 13 HOH HOH . F 5 HOH B 27 427 41 HOH HOH . F 5 HOH B 28 428 140 HOH HOH . F 5 HOH B 29 429 168 HOH HOH . F 5 HOH B 30 430 17 HOH HOH . F 5 HOH B 31 431 128 HOH HOH . F 5 HOH B 32 432 53 HOH HOH . F 5 HOH B 33 433 177 HOH HOH . F 5 HOH B 34 434 16 HOH HOH . F 5 HOH B 35 435 138 HOH HOH . F 5 HOH B 36 436 8 HOH HOH . F 5 HOH B 37 437 114 HOH HOH . F 5 HOH B 38 438 136 HOH HOH . F 5 HOH B 39 439 58 HOH HOH . F 5 HOH B 40 440 7 HOH HOH . F 5 HOH B 41 441 34 HOH HOH . F 5 HOH B 42 442 1 HOH HOH . F 5 HOH B 43 443 56 HOH HOH . F 5 HOH B 44 444 73 HOH HOH . F 5 HOH B 45 445 9 HOH HOH . F 5 HOH B 46 446 101 HOH HOH . F 5 HOH B 47 447 127 HOH HOH . F 5 HOH B 48 448 4 HOH HOH . F 5 HOH B 49 449 62 HOH HOH . F 5 HOH B 50 450 20 HOH HOH . F 5 HOH B 51 451 151 HOH HOH . F 5 HOH B 52 452 96 HOH HOH . F 5 HOH B 53 453 100 HOH HOH . F 5 HOH B 54 454 29 HOH HOH . F 5 HOH B 55 455 88 HOH HOH . F 5 HOH B 56 456 11 HOH HOH . F 5 HOH B 57 457 3 HOH HOH . F 5 HOH B 58 458 43 HOH HOH . F 5 HOH B 59 459 37 HOH HOH . F 5 HOH B 60 460 12 HOH HOH . F 5 HOH B 61 461 70 HOH HOH . F 5 HOH B 62 462 69 HOH HOH . F 5 HOH B 63 463 52 HOH HOH . F 5 HOH B 64 464 19 HOH HOH . F 5 HOH B 65 465 134 HOH HOH . F 5 HOH B 66 466 84 HOH HOH . F 5 HOH B 67 467 171 HOH HOH . F 5 HOH B 68 468 54 HOH HOH . F 5 HOH B 69 469 45 HOH HOH . F 5 HOH B 70 470 92 HOH HOH . F 5 HOH B 71 471 150 HOH HOH . F 5 HOH B 72 472 76 HOH HOH . F 5 HOH B 73 473 122 HOH HOH . F 5 HOH B 74 474 42 HOH HOH . F 5 HOH B 75 475 2 HOH HOH . F 5 HOH B 76 476 146 HOH HOH . F 5 HOH B 77 477 55 HOH HOH . F 5 HOH B 78 478 111 HOH HOH . F 5 HOH B 79 479 35 HOH HOH . F 5 HOH B 80 480 110 HOH HOH . F 5 HOH B 81 481 80 HOH HOH . F 5 HOH B 82 482 87 HOH HOH . F 5 HOH B 83 483 77 HOH HOH . F 5 HOH B 84 484 90 HOH HOH . F 5 HOH B 85 485 14 HOH HOH . F 5 HOH B 86 486 25 HOH HOH . F 5 HOH B 87 487 178 HOH HOH . F 5 HOH B 88 488 61 HOH HOH . F 5 HOH B 89 489 30 HOH HOH . F 5 HOH B 90 490 22 HOH HOH . F 5 HOH B 91 491 163 HOH HOH . F 5 HOH B 92 492 39 HOH HOH . F 5 HOH B 93 493 109 HOH HOH . F 5 HOH B 94 494 40 HOH HOH . F 5 HOH B 95 495 132 HOH HOH . F 5 HOH B 96 496 166 HOH HOH . F 5 HOH B 97 497 50 HOH HOH . F 5 HOH B 98 498 153 HOH HOH . F 5 HOH B 99 499 44 HOH HOH . F 5 HOH B 100 500 83 HOH HOH . F 5 HOH B 101 501 104 HOH HOH . F 5 HOH B 102 502 118 HOH HOH . F 5 HOH B 103 503 98 HOH HOH . F 5 HOH B 104 504 103 HOH HOH . F 5 HOH B 105 505 24 HOH HOH . F 5 HOH B 106 506 38 HOH HOH . F 5 HOH B 107 507 36 HOH HOH . F 5 HOH B 108 508 21 HOH HOH . F 5 HOH B 109 509 180 HOH HOH . F 5 HOH B 110 510 6 HOH HOH . F 5 HOH B 111 511 158 HOH HOH . F 5 HOH B 112 512 46 HOH HOH . F 5 HOH B 113 513 113 HOH HOH . F 5 HOH B 114 514 67 HOH HOH . F 5 HOH B 115 515 10 HOH HOH . F 5 HOH B 116 516 23 HOH HOH . F 5 HOH B 117 517 68 HOH HOH . F 5 HOH B 118 518 51 HOH HOH . F 5 HOH B 119 519 141 HOH HOH . F 5 HOH B 120 520 28 HOH HOH . F 5 HOH B 121 521 15 HOH HOH . F 5 HOH B 122 522 65 HOH HOH . F 5 HOH B 123 523 71 HOH HOH . F 5 HOH B 124 524 165 HOH HOH . F 5 HOH B 125 525 5 HOH HOH . F 5 HOH B 126 526 152 HOH HOH . F 5 HOH B 127 527 170 HOH HOH . F 5 HOH B 128 528 131 HOH HOH . F 5 HOH B 129 529 59 HOH HOH . F 5 HOH B 130 530 167 HOH HOH . F 5 HOH B 131 531 147 HOH HOH . F 5 HOH B 132 532 154 HOH HOH . F 5 HOH B 133 533 93 HOH HOH . F 5 HOH B 134 534 120 HOH HOH . F 5 HOH B 135 535 125 HOH HOH . F 5 HOH B 136 536 148 HOH HOH . F 5 HOH B 137 537 81 HOH HOH . F 5 HOH B 138 538 86 HOH HOH . F 5 HOH B 139 539 107 HOH HOH . F 5 HOH B 140 540 121 HOH HOH . F 5 HOH B 141 541 31 HOH HOH . F 5 HOH B 142 542 129 HOH HOH . F 5 HOH B 143 543 89 HOH HOH . F 5 HOH B 144 544 172 HOH HOH . F 5 HOH B 145 545 135 HOH HOH . F 5 HOH B 146 546 156 HOH HOH . F 5 HOH B 147 547 79 HOH HOH . F 5 HOH B 148 548 162 HOH HOH . F 5 HOH B 149 549 117 HOH HOH . F 5 HOH B 150 550 102 HOH HOH . F 5 HOH B 151 551 161 HOH HOH . F 5 HOH B 152 552 164 HOH HOH . F 5 HOH B 153 553 94 HOH HOH . F 5 HOH B 154 554 91 HOH HOH . F 5 HOH B 155 555 124 HOH HOH . F 5 HOH B 156 556 181 HOH HOH . F 5 HOH B 157 557 57 HOH HOH . F 5 HOH B 158 558 143 HOH HOH . F 5 HOH B 159 559 160 HOH HOH . F 5 HOH B 160 560 97 HOH HOH . F 5 HOH B 161 561 144 HOH HOH . F 5 HOH B 162 562 174 HOH HOH . F 5 HOH B 163 563 145 HOH HOH . F 5 HOH B 164 564 85 HOH HOH . F 5 HOH B 165 565 155 HOH HOH . F 5 HOH B 166 566 108 HOH HOH . F 5 HOH B 167 567 157 HOH HOH . F 5 HOH B 168 568 137 HOH HOH . F 5 HOH B 169 569 116 HOH HOH . F 5 HOH B 170 570 74 HOH HOH . F 5 HOH B 171 571 149 HOH HOH . F 5 HOH B 172 572 66 HOH HOH . F 5 HOH B 173 573 106 HOH HOH . F 5 HOH B 174 574 179 HOH HOH . F 5 HOH B 175 575 130 HOH HOH . F 5 HOH B 176 576 105 HOH HOH . F 5 HOH B 177 577 173 HOH HOH . F 5 HOH B 178 578 169 HOH HOH . F 5 HOH B 179 579 176 HOH HOH . F 5 HOH B 180 580 72 HOH HOH . F 5 HOH B 181 581 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . D 3 8.341 56.044 25.145 1 47.34 ? S1 DTT 303 B 1 HETATM 2 C C1 DTT . . . D 3 9.557 55.947 26.461 1 43.02 ? C1 DTT 303 B 1 HETATM 3 C C2 DTT . . . D 3 10.007 57.346 26.849 1 31.69 ? C2 DTT 303 B 1 HETATM 4 O O2 DTT . . . D 3 10.329 58.091 25.686 1 41.05 ? O2 DTT 303 B 1 HETATM 5 C C3 DTT . . . D 3 11.231 57.251 27.77 1 37.27 ? C3 DTT 303 B 1 HETATM 6 O O3 DTT . . . D 3 11.894 58.512 27.815 1 37.28 ? O3 DTT 303 B 1 HETATM 7 C C4 DTT . . . D 3 10.858 56.737 29.162 1 35.07 ? C4 DTT 303 B 1 HETATM 8 S S4 DTT . . . D 3 10.182 58.035 30.239 1 42.2 ? S4 DTT 303 B 1 HETATM 9 H HS1 DTT . . . D 3 7.699 55.605 25.706 1 56.8 ? HS1 DTT 303 B 1 HETATM 10 H H11 DTT . . . D 3 10.416 55.364 26.127 1 51.63 ? H11 DTT 303 B 1 HETATM 11 H H12 DTT . . . D 3 9.123 55.447 27.327 1 51.63 ? H12 DTT 303 B 1 HETATM 12 H H2 DTT . . . D 3 9.198 57.836 27.39 1 38.03 ? H2 DTT 303 B 1 HETATM 13 H HO2 DTT . . . D 3 11.264 58.379 25.731 1 49.27 ? HO2 DTT 303 B 1 HETATM 14 H H3 DTT . . . D 3 11.911 56.522 27.329 1 44.72 ? H3 DTT 303 B 1 HETATM 15 H HO3 DTT . . . D 3 11.98 58.803 28.747 1 44.74 ? HO3 DTT 303 B 1 HETATM 16 H H41 DTT . . . D 3 10.122 55.939 29.062 1 42.08 ? H41 DTT 303 B 1 HETATM 17 H H42 DTT . . . D 3 11.743 56.309 29.633 1 42.08 ? H42 DTT 303 B 1 HETATM 18 H HS2 DTT . . . D 3 10.151 57.413 30.97 1 50.64 ? HS2 DTT 303 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 18 #