data_4U17 # _model_server_result.job_id dplIVQX0NjSrCj1P0fYZ6g _model_server_result.datetime_utc '2024-11-25 13:02:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u17 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":205}' # _entry.id 4U17 # _exptl.entry_id 4U17 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.6 _cell.angle_gamma 90 _cell.entry_id 4U17 _cell.length_a 88.965 _cell.length_b 57.873 _cell.length_c 101.188 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U17 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA Dimeric 2 author_and_software_defined_assembly 1 PISA Dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J,K,L,M,N,O,Q 1 1 B,G,H,I,P 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 I N N ? 3 N N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4U17 _atom_sites.fract_transf_matrix[1][1] 0.01124 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000117 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017279 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009883 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PO4 A 1 201 3 PO4 PO4 . E 3 EDO A 1 202 1 EDO EDO . F 3 EDO A 1 203 3 EDO EDO . G 2 PO4 B 1 201 1 PO4 PO4 . H 2 PO4 B 1 202 6 PO4 PO4 . I 3 EDO B 1 203 4 EDO EDO . J 2 PO4 C 1 201 2 PO4 PO4 . K 2 PO4 C 1 202 4 PO4 PO4 . L 2 PO4 C 1 203 5 PO4 PO4 . M 2 PO4 C 1 204 7 PO4 PO4 . N 3 EDO C 1 205 2 EDO EDO . O 4 HOH A 1 301 71 HOH HOH . O 4 HOH A 2 302 41 HOH HOH . O 4 HOH A 3 303 32 HOH HOH . O 4 HOH A 4 304 33 HOH HOH . O 4 HOH A 5 305 49 HOH HOH . O 4 HOH A 6 306 7 HOH HOH . O 4 HOH A 7 307 36 HOH HOH . O 4 HOH A 8 308 134 HOH HOH . O 4 HOH A 9 309 100 HOH HOH . O 4 HOH A 10 310 5 HOH HOH . O 4 HOH A 11 311 6 HOH HOH . O 4 HOH A 12 312 8 HOH HOH . O 4 HOH A 13 313 10 HOH HOH . O 4 HOH A 14 314 11 HOH HOH . O 4 HOH A 15 315 17 HOH HOH . O 4 HOH A 16 316 18 HOH HOH . O 4 HOH A 17 317 24 HOH HOH . O 4 HOH A 18 318 34 HOH HOH . O 4 HOH A 19 319 42 HOH HOH . O 4 HOH A 20 320 43 HOH HOH . O 4 HOH A 21 321 45 HOH HOH . O 4 HOH A 22 322 59 HOH HOH . O 4 HOH A 23 323 60 HOH HOH . O 4 HOH A 24 324 62 HOH HOH . O 4 HOH A 25 325 64 HOH HOH . O 4 HOH A 26 326 66 HOH HOH . O 4 HOH A 27 327 84 HOH HOH . O 4 HOH A 28 328 87 HOH HOH . O 4 HOH A 29 329 89 HOH HOH . O 4 HOH A 30 330 90 HOH HOH . O 4 HOH A 31 331 91 HOH HOH . O 4 HOH A 32 332 97 HOH HOH . O 4 HOH A 33 333 98 HOH HOH . O 4 HOH A 34 334 99 HOH HOH . O 4 HOH A 35 335 102 HOH HOH . O 4 HOH A 36 336 103 HOH HOH . O 4 HOH A 37 337 104 HOH HOH . O 4 HOH A 38 338 107 HOH HOH . O 4 HOH A 39 339 109 HOH HOH . O 4 HOH A 40 340 110 HOH HOH . O 4 HOH A 41 341 118 HOH HOH . O 4 HOH A 42 342 119 HOH HOH . O 4 HOH A 43 343 120 HOH HOH . O 4 HOH A 44 344 121 HOH HOH . O 4 HOH A 45 345 122 HOH HOH . O 4 HOH A 46 346 123 HOH HOH . O 4 HOH A 47 347 124 HOH HOH . O 4 HOH A 48 348 125 HOH HOH . O 4 HOH A 49 349 128 HOH HOH . O 4 HOH A 50 350 140 HOH HOH . O 4 HOH A 51 351 144 HOH HOH . P 4 HOH B 1 301 151 HOH HOH . P 4 HOH B 2 302 61 HOH HOH . P 4 HOH B 3 303 56 HOH HOH . P 4 HOH B 4 304 25 HOH HOH . P 4 HOH B 5 305 2 HOH HOH . P 4 HOH B 6 306 44 HOH HOH . P 4 HOH B 7 307 80 HOH HOH . P 4 HOH B 8 308 30 HOH HOH . P 4 HOH B 9 309 72 HOH HOH . P 4 HOH B 10 310 135 HOH HOH . P 4 HOH B 11 311 137 HOH HOH . P 4 HOH B 12 312 1 HOH HOH . P 4 HOH B 13 313 3 HOH HOH . P 4 HOH B 14 314 4 HOH HOH . P 4 HOH B 15 315 9 HOH HOH . P 4 HOH B 16 316 12 HOH HOH . P 4 HOH B 17 317 13 HOH HOH . P 4 HOH B 18 318 19 HOH HOH . P 4 HOH B 19 319 22 HOH HOH . P 4 HOH B 20 320 29 HOH HOH . P 4 HOH B 21 321 38 HOH HOH . P 4 HOH B 22 322 47 HOH HOH . P 4 HOH B 23 323 48 HOH HOH . P 4 HOH B 24 324 50 HOH HOH . P 4 HOH B 25 325 51 HOH HOH . P 4 HOH B 26 326 52 HOH HOH . P 4 HOH B 27 327 53 HOH HOH . P 4 HOH B 28 328 58 HOH HOH . P 4 HOH B 29 329 65 HOH HOH . P 4 HOH B 30 330 67 HOH HOH . P 4 HOH B 31 331 68 HOH HOH . P 4 HOH B 32 332 77 HOH HOH . P 4 HOH B 33 333 78 HOH HOH . P 4 HOH B 34 334 81 HOH HOH . P 4 HOH B 35 335 82 HOH HOH . P 4 HOH B 36 336 88 HOH HOH . P 4 HOH B 37 337 93 HOH HOH . P 4 HOH B 38 338 105 HOH HOH . P 4 HOH B 39 339 106 HOH HOH . P 4 HOH B 40 340 111 HOH HOH . P 4 HOH B 41 341 112 HOH HOH . P 4 HOH B 42 342 113 HOH HOH . P 4 HOH B 43 343 126 HOH HOH . P 4 HOH B 44 344 131 HOH HOH . P 4 HOH B 45 345 132 HOH HOH . P 4 HOH B 46 346 139 HOH HOH . P 4 HOH B 47 347 141 HOH HOH . Q 4 HOH C 1 301 31 HOH HOH . Q 4 HOH C 2 302 148 HOH HOH . Q 4 HOH C 3 303 69 HOH HOH . Q 4 HOH C 4 304 40 HOH HOH . Q 4 HOH C 5 305 26 HOH HOH . Q 4 HOH C 6 306 20 HOH HOH . Q 4 HOH C 7 307 108 HOH HOH . Q 4 HOH C 8 308 147 HOH HOH . Q 4 HOH C 9 309 79 HOH HOH . Q 4 HOH C 10 310 143 HOH HOH . Q 4 HOH C 11 311 14 HOH HOH . Q 4 HOH C 12 312 15 HOH HOH . Q 4 HOH C 13 313 16 HOH HOH . Q 4 HOH C 14 314 21 HOH HOH . Q 4 HOH C 15 315 23 HOH HOH . Q 4 HOH C 16 316 27 HOH HOH . Q 4 HOH C 17 317 28 HOH HOH . Q 4 HOH C 18 318 35 HOH HOH . Q 4 HOH C 19 319 37 HOH HOH . Q 4 HOH C 20 320 39 HOH HOH . Q 4 HOH C 21 321 46 HOH HOH . Q 4 HOH C 22 322 54 HOH HOH . Q 4 HOH C 23 323 55 HOH HOH . Q 4 HOH C 24 324 57 HOH HOH . Q 4 HOH C 25 325 63 HOH HOH . Q 4 HOH C 26 326 70 HOH HOH . Q 4 HOH C 27 327 73 HOH HOH . Q 4 HOH C 28 328 74 HOH HOH . Q 4 HOH C 29 329 75 HOH HOH . Q 4 HOH C 30 330 76 HOH HOH . Q 4 HOH C 31 331 83 HOH HOH . Q 4 HOH C 32 332 85 HOH HOH . Q 4 HOH C 33 333 86 HOH HOH . Q 4 HOH C 34 334 92 HOH HOH . Q 4 HOH C 35 335 94 HOH HOH . Q 4 HOH C 36 336 95 HOH HOH . Q 4 HOH C 37 337 96 HOH HOH . Q 4 HOH C 38 338 101 HOH HOH . Q 4 HOH C 39 339 114 HOH HOH . Q 4 HOH C 40 340 115 HOH HOH . Q 4 HOH C 41 341 116 HOH HOH . Q 4 HOH C 42 342 117 HOH HOH . Q 4 HOH C 43 343 127 HOH HOH . Q 4 HOH C 44 344 129 HOH HOH . Q 4 HOH C 45 345 130 HOH HOH . Q 4 HOH C 46 346 133 HOH HOH . Q 4 HOH C 47 347 136 HOH HOH . Q 4 HOH C 48 348 138 HOH HOH . Q 4 HOH C 49 349 142 HOH HOH . Q 4 HOH C 50 350 145 HOH HOH . Q 4 HOH C 51 351 146 HOH HOH . Q 4 HOH C 52 352 149 HOH HOH . Q 4 HOH C 53 353 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . N 3 5.841 -7.587 37.912 0.88 46.95 ? C1 EDO 205 C 1 HETATM 2 O O1 EDO . . . N 3 6.517 -8.851 37.981 1 44.12 ? O1 EDO 205 C 1 HETATM 3 C C2 EDO . . . N 3 4.506 -7.685 38.641 0.94 52.86 ? C2 EDO 205 C 1 HETATM 4 O O2 EDO . . . N 3 3.88 -8.938 38.316 0.55 54.26 ? O2 EDO 205 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #