data_4U1B
#
_model_server_result.job_id            EIH50493qWmC_NCTAvaVxA 
_model_server_result.datetime_utc      '2024-11-22 08:36:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4u1b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    4U1B 
#
_exptl.entry_id    4U1B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.39 
_cell.angle_gamma         90 
_cell.entry_id            4U1B 
_cell.length_a            47.026 
_cell.length_b            76.929 
_cell.length_c            47.17 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4U1B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 140 A ASP 229 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc2 A OD2 ASP 140 A ASP 229 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc3 A OD2 ASP 151 A ASP 240 1_555 B CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc4 A OD1 ASP 151 A ASP 240 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? 
metalc ? metalc5 A NE2 HIS 214 A HIS 303 1_555 B CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc6 A OE1 GLU 247 A GLU 336 1_555 B CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc7 A OE2 GLU 278 A GLU 367 1_555 B CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc8 A OE1 GLU 278 A GLU 367 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc9 B CO CO . A CO 401 1_555 E O1 Q08 . A Q08 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc10 B CO CO . A CO 401 1_555 E O2 Q08 . A Q08 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc11 C CO CO . A CO 402 1_555 E O1 Q08 . A Q08 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc12 C CO CO . A CO 402 1_555 E N Q08 . A Q08 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4U1B 
_atom_sites.fract_transf_matrix[1][1]    0.021265 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000889 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012999 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021218 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CO A 1 401 401 CO CO . 
C 2 CO A 1 402 402 CO CO . 
D 3 GOL A 1 403 403 GOL GOL . 
E 4 Q08 A 1 404 404 Q08 Q08 . 
F 5 HOH A 1 501 501 HOH HOH . 
F 5 HOH A 2 502 502 HOH HOH . 
F 5 HOH A 3 503 503 HOH HOH . 
F 5 HOH A 4 504 504 HOH HOH . 
F 5 HOH A 5 505 505 HOH HOH . 
F 5 HOH A 6 506 506 HOH HOH . 
F 5 HOH A 7 507 507 HOH HOH . 
F 5 HOH A 8 508 508 HOH HOH . 
F 5 HOH A 9 509 509 HOH HOH . 
F 5 HOH A 10 510 510 HOH HOH . 
F 5 HOH A 11 511 511 HOH HOH . 
F 5 HOH A 12 512 512 HOH HOH . 
F 5 HOH A 13 513 513 HOH HOH . 
F 5 HOH A 14 514 514 HOH HOH . 
F 5 HOH A 15 515 515 HOH HOH . 
F 5 HOH A 16 516 516 HOH HOH . 
F 5 HOH A 17 517 517 HOH HOH . 
F 5 HOH A 18 518 518 HOH HOH . 
F 5 HOH A 19 519 519 HOH HOH . 
F 5 HOH A 20 520 520 HOH HOH . 
F 5 HOH A 21 521 521 HOH HOH . 
F 5 HOH A 22 522 522 HOH HOH . 
F 5 HOH A 23 523 523 HOH HOH . 
F 5 HOH A 24 524 524 HOH HOH . 
F 5 HOH A 25 525 525 HOH HOH . 
F 5 HOH A 26 526 526 HOH HOH . 
F 5 HOH A 27 527 527 HOH HOH . 
F 5 HOH A 28 528 528 HOH HOH . 
F 5 HOH A 29 529 529 HOH HOH . 
F 5 HOH A 30 530 530 HOH HOH . 
F 5 HOH A 31 531 531 HOH HOH . 
F 5 HOH A 32 532 532 HOH HOH . 
F 5 HOH A 33 533 533 HOH HOH . 
F 5 HOH A 34 534 534 HOH HOH . 
F 5 HOH A 35 535 535 HOH HOH . 
F 5 HOH A 36 536 536 HOH HOH . 
F 5 HOH A 37 537 537 HOH HOH . 
F 5 HOH A 38 538 538 HOH HOH . 
F 5 HOH A 39 539 539 HOH HOH . 
F 5 HOH A 40 540 540 HOH HOH . 
F 5 HOH A 41 541 541 HOH HOH . 
F 5 HOH A 42 542 542 HOH HOH . 
F 5 HOH A 43 543 543 HOH HOH . 
F 5 HOH A 44 544 544 HOH HOH . 
F 5 HOH A 45 545 545 HOH HOH . 
F 5 HOH A 46 546 546 HOH HOH . 
F 5 HOH A 47 547 547 HOH HOH . 
F 5 HOH A 48 548 548 HOH HOH . 
F 5 HOH A 49 549 549 HOH HOH . 
F 5 HOH A 50 550 550 HOH HOH . 
F 5 HOH A 51 551 551 HOH HOH . 
F 5 HOH A 52 552 552 HOH HOH . 
F 5 HOH A 53 553 553 HOH HOH . 
F 5 HOH A 54 554 554 HOH HOH . 
F 5 HOH A 55 555 555 HOH HOH . 
F 5 HOH A 56 556 556 HOH HOH . 
F 5 HOH A 57 557 557 HOH HOH . 
F 5 HOH A 58 558 558 HOH HOH . 
F 5 HOH A 59 559 559 HOH HOH . 
F 5 HOH A 60 560 560 HOH HOH . 
F 5 HOH A 61 561 561 HOH HOH . 
F 5 HOH A 62 562 562 HOH HOH . 
F 5 HOH A 63 563 563 HOH HOH . 
F 5 HOH A 64 564 564 HOH HOH . 
F 5 HOH A 65 565 565 HOH HOH . 
F 5 HOH A 66 566 566 HOH HOH . 
F 5 HOH A 67 567 567 HOH HOH . 
F 5 HOH A 68 568 568 HOH HOH . 
F 5 HOH A 69 569 569 HOH HOH . 
F 5 HOH A 70 570 570 HOH HOH . 
F 5 HOH A 71 571 571 HOH HOH . 
F 5 HOH A 72 572 572 HOH HOH . 
F 5 HOH A 73 573 573 HOH HOH . 
F 5 HOH A 74 574 574 HOH HOH . 
F 5 HOH A 75 575 575 HOH HOH . 
F 5 HOH A 76 576 576 HOH HOH . 
F 5 HOH A 77 577 577 HOH HOH . 
F 5 HOH A 78 578 578 HOH HOH . 
F 5 HOH A 79 579 579 HOH HOH . 
F 5 HOH A 80 580 580 HOH HOH . 
F 5 HOH A 81 581 581 HOH HOH . 
F 5 HOH A 82 582 582 HOH HOH . 
F 5 HOH A 83 583 583 HOH HOH . 
F 5 HOH A 84 584 584 HOH HOH . 
F 5 HOH A 85 585 585 HOH HOH . 
F 5 HOH A 86 586 586 HOH HOH . 
F 5 HOH A 87 587 587 HOH HOH . 
F 5 HOH A 88 588 588 HOH HOH . 
F 5 HOH A 89 589 589 HOH HOH . 
F 5 HOH A 90 590 590 HOH HOH . 
F 5 HOH A 91 591 591 HOH HOH . 
F 5 HOH A 92 592 592 HOH HOH . 
F 5 HOH A 93 593 593 HOH HOH . 
F 5 HOH A 94 594 594 HOH HOH . 
F 5 HOH A 95 595 595 HOH HOH . 
F 5 HOH A 96 596 596 HOH HOH . 
F 5 HOH A 97 597 597 HOH HOH . 
F 5 HOH A 98 598 598 HOH HOH . 
F 5 HOH A 99 599 599 HOH HOH . 
F 5 HOH A 100 600 600 HOH HOH . 
F 5 HOH A 101 601 601 HOH HOH . 
F 5 HOH A 102 602 602 HOH HOH . 
F 5 HOH A 103 603 603 HOH HOH . 
F 5 HOH A 104 604 604 HOH HOH . 
F 5 HOH A 105 605 605 HOH HOH . 
F 5 HOH A 106 606 606 HOH HOH . 
F 5 HOH A 107 607 607 HOH HOH . 
F 5 HOH A 108 608 608 HOH HOH . 
F 5 HOH A 109 609 609 HOH HOH . 
F 5 HOH A 110 610 610 HOH HOH . 
F 5 HOH A 111 611 611 HOH HOH . 
F 5 HOH A 112 612 612 HOH HOH . 
F 5 HOH A 113 613 613 HOH HOH . 
F 5 HOH A 114 614 614 HOH HOH . 
F 5 HOH A 115 615 615 HOH HOH . 
F 5 HOH A 116 616 616 HOH HOH . 
F 5 HOH A 117 617 617 HOH HOH . 
F 5 HOH A 118 618 618 HOH HOH . 
F 5 HOH A 119 619 619 HOH HOH . 
F 5 HOH A 120 620 620 HOH HOH . 
F 5 HOH A 121 621 621 HOH HOH . 
F 5 HOH A 122 622 622 HOH HOH . 
F 5 HOH A 123 623 623 HOH HOH . 
F 5 HOH A 124 624 624 HOH HOH . 
F 5 HOH A 125 625 625 HOH HOH . 
F 5 HOH A 126 626 626 HOH HOH . 
F 5 HOH A 127 627 627 HOH HOH . 
F 5 HOH A 128 628 628 HOH HOH . 
F 5 HOH A 129 629 629 HOH HOH . 
F 5 HOH A 130 630 630 HOH HOH . 
F 5 HOH A 131 631 631 HOH HOH . 
F 5 HOH A 132 632 632 HOH HOH . 
F 5 HOH A 133 633 633 HOH HOH . 
F 5 HOH A 134 634 634 HOH HOH . 
F 5 HOH A 135 635 635 HOH HOH . 
F 5 HOH A 136 636 636 HOH HOH . 
F 5 HOH A 137 637 637 HOH HOH . 
F 5 HOH A 138 638 638 HOH HOH . 
F 5 HOH A 139 639 639 HOH HOH . 
F 5 HOH A 140 640 640 HOH HOH . 
F 5 HOH A 141 641 641 HOH HOH . 
F 5 HOH A 142 642 642 HOH HOH . 
F 5 HOH A 143 643 643 HOH HOH . 
F 5 HOH A 144 644 644 HOH HOH . 
F 5 HOH A 145 645 645 HOH HOH . 
F 5 HOH A 146 646 646 HOH HOH . 
F 5 HOH A 147 647 647 HOH HOH . 
F 5 HOH A 148 648 648 HOH HOH . 
F 5 HOH A 149 649 649 HOH HOH . 
F 5 HOH A 150 650 650 HOH HOH . 
F 5 HOH A 151 651 651 HOH HOH . 
F 5 HOH A 152 652 652 HOH HOH . 
F 5 HOH A 153 653 653 HOH HOH . 
F 5 HOH A 154 654 654 HOH HOH . 
F 5 HOH A 155 655 655 HOH HOH . 
F 5 HOH A 156 656 656 HOH HOH . 
F 5 HOH A 157 657 657 HOH HOH . 
F 5 HOH A 158 658 658 HOH HOH . 
F 5 HOH A 159 659 659 HOH HOH . 
F 5 HOH A 160 660 660 HOH HOH . 
F 5 HOH A 161 661 661 HOH HOH . 
F 5 HOH A 162 662 662 HOH HOH . 
F 5 HOH A 163 663 663 HOH HOH . 
F 5 HOH A 164 664 664 HOH HOH . 
F 5 HOH A 165 665 665 HOH HOH . 
F 5 HOH A 166 666 666 HOH HOH . 
F 5 HOH A 167 667 667 HOH HOH . 
F 5 HOH A 168 668 668 HOH HOH . 
F 5 HOH A 169 669 669 HOH HOH . 
F 5 HOH A 170 670 670 HOH HOH . 
F 5 HOH A 171 671 671 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 16.686 -10.92 -0.534 1 34.2 ? C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . D 3 16.682 -9.462 -0.662 1 26.75 ? O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . D 3 17.788 -11.512 -1.436 1 37.26 ? C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . D 3 19.099 -11.07 -1.075 1 29.36 ? O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . D 3 17.521 -11.125 -2.918 1 38.77 ? C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . D 3 18.511 -11.614 -3.837 1 37.37 ? O3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#