data_4U1B # _model_server_result.job_id MR-YZkgnv1UQjv6QjAGEgQ _model_server_result.datetime_utc '2024-11-05 04:32:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u1b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 4U1B # _exptl.entry_id 4U1B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 209.223 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1R)-1-amino-2-propylpentyl]phosphonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.39 _cell.angle_gamma 90 _cell.entry_id 4U1B _cell.length_a 47.026 _cell.length_b 76.929 _cell.length_c 47.17 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U1B _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 140 A ASP 229 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc2 A OD2 ASP 140 A ASP 229 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc3 A OD2 ASP 151 A ASP 240 1_555 B CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc4 A OD1 ASP 151 A ASP 240 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc5 A NE2 HIS 214 A HIS 303 1_555 B CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc6 A OE1 GLU 247 A GLU 336 1_555 B CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc7 A OE2 GLU 278 A GLU 367 1_555 B CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc8 A OE1 GLU 278 A GLU 367 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc9 B CO CO . A CO 401 1_555 E O1 Q08 . A Q08 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc10 B CO CO . A CO 401 1_555 E O2 Q08 . A Q08 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc11 C CO CO . A CO 402 1_555 E O1 Q08 . A Q08 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc12 C CO CO . A CO 402 1_555 E N Q08 . A Q08 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? # _chem_comp.formula 'C8 H20 N O3 P' _chem_comp.formula_weight 209.223 _chem_comp.id Q08 _chem_comp.mon_nstd_flag . _chem_comp.name '[(1R)-1-amino-2-propylpentyl]phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C7 Q08 sing 290 n n C6 C5 Q08 sing 291 n n C7 C3 Q08 sing 292 n n C7 P Q08 sing 293 n n C4 C3 Q08 sing 294 n n C4 C5 Q08 sing 295 n n O1 P Q08 doub 296 n n C3 C2 Q08 sing 297 n n O P Q08 sing 298 n n P O2 Q08 sing 299 n n C2 C1 Q08 sing 300 n n C1 C Q08 sing 301 n n O2 H1 Q08 sing 302 n n O H2 Q08 sing 303 n n C7 H3 Q08 sing 304 n n N H4 Q08 sing 305 n n N H5 Q08 sing 306 n n C3 H7 Q08 sing 307 n n C4 H8 Q08 sing 308 n n C4 H9 Q08 sing 309 n n C5 H10 Q08 sing 310 n n C5 H11 Q08 sing 311 n n C6 H12 Q08 sing 312 n n C6 H13 Q08 sing 313 n n C6 H14 Q08 sing 314 n n C2 H15 Q08 sing 315 n n C2 H16 Q08 sing 316 n n C1 H17 Q08 sing 317 n n C1 H18 Q08 sing 318 n n C H19 Q08 sing 319 n n C H20 Q08 sing 320 n n C H21 Q08 sing 321 n n # _atom_sites.entry_id 4U1B _atom_sites.fract_transf_matrix[1][1] 0.021265 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000889 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012999 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021218 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 401 401 CO CO . C 2 CO A 1 402 402 CO CO . D 3 GOL A 1 403 403 GOL GOL . E 4 Q08 A 1 404 404 Q08 Q08 . F 5 HOH A 1 501 501 HOH HOH . F 5 HOH A 2 502 502 HOH HOH . F 5 HOH A 3 503 503 HOH HOH . F 5 HOH A 4 504 504 HOH HOH . F 5 HOH A 5 505 505 HOH HOH . F 5 HOH A 6 506 506 HOH HOH . F 5 HOH A 7 507 507 HOH HOH . F 5 HOH A 8 508 508 HOH HOH . F 5 HOH A 9 509 509 HOH HOH . F 5 HOH A 10 510 510 HOH HOH . F 5 HOH A 11 511 511 HOH HOH . F 5 HOH A 12 512 512 HOH HOH . F 5 HOH A 13 513 513 HOH HOH . F 5 HOH A 14 514 514 HOH HOH . F 5 HOH A 15 515 515 HOH HOH . F 5 HOH A 16 516 516 HOH HOH . F 5 HOH A 17 517 517 HOH HOH . F 5 HOH A 18 518 518 HOH HOH . F 5 HOH A 19 519 519 HOH HOH . F 5 HOH A 20 520 520 HOH HOH . F 5 HOH A 21 521 521 HOH HOH . F 5 HOH A 22 522 522 HOH HOH . F 5 HOH A 23 523 523 HOH HOH . F 5 HOH A 24 524 524 HOH HOH . F 5 HOH A 25 525 525 HOH HOH . F 5 HOH A 26 526 526 HOH HOH . F 5 HOH A 27 527 527 HOH HOH . F 5 HOH A 28 528 528 HOH HOH . F 5 HOH A 29 529 529 HOH HOH . F 5 HOH A 30 530 530 HOH HOH . F 5 HOH A 31 531 531 HOH HOH . F 5 HOH A 32 532 532 HOH HOH . F 5 HOH A 33 533 533 HOH HOH . F 5 HOH A 34 534 534 HOH HOH . F 5 HOH A 35 535 535 HOH HOH . F 5 HOH A 36 536 536 HOH HOH . F 5 HOH A 37 537 537 HOH HOH . F 5 HOH A 38 538 538 HOH HOH . F 5 HOH A 39 539 539 HOH HOH . F 5 HOH A 40 540 540 HOH HOH . F 5 HOH A 41 541 541 HOH HOH . F 5 HOH A 42 542 542 HOH HOH . F 5 HOH A 43 543 543 HOH HOH . F 5 HOH A 44 544 544 HOH HOH . F 5 HOH A 45 545 545 HOH HOH . F 5 HOH A 46 546 546 HOH HOH . F 5 HOH A 47 547 547 HOH HOH . F 5 HOH A 48 548 548 HOH HOH . F 5 HOH A 49 549 549 HOH HOH . F 5 HOH A 50 550 550 HOH HOH . F 5 HOH A 51 551 551 HOH HOH . F 5 HOH A 52 552 552 HOH HOH . F 5 HOH A 53 553 553 HOH HOH . F 5 HOH A 54 554 554 HOH HOH . F 5 HOH A 55 555 555 HOH HOH . F 5 HOH A 56 556 556 HOH HOH . F 5 HOH A 57 557 557 HOH HOH . F 5 HOH A 58 558 558 HOH HOH . F 5 HOH A 59 559 559 HOH HOH . F 5 HOH A 60 560 560 HOH HOH . F 5 HOH A 61 561 561 HOH HOH . F 5 HOH A 62 562 562 HOH HOH . F 5 HOH A 63 563 563 HOH HOH . F 5 HOH A 64 564 564 HOH HOH . F 5 HOH A 65 565 565 HOH HOH . F 5 HOH A 66 566 566 HOH HOH . F 5 HOH A 67 567 567 HOH HOH . F 5 HOH A 68 568 568 HOH HOH . F 5 HOH A 69 569 569 HOH HOH . F 5 HOH A 70 570 570 HOH HOH . F 5 HOH A 71 571 571 HOH HOH . F 5 HOH A 72 572 572 HOH HOH . F 5 HOH A 73 573 573 HOH HOH . F 5 HOH A 74 574 574 HOH HOH . F 5 HOH A 75 575 575 HOH HOH . F 5 HOH A 76 576 576 HOH HOH . F 5 HOH A 77 577 577 HOH HOH . F 5 HOH A 78 578 578 HOH HOH . F 5 HOH A 79 579 579 HOH HOH . F 5 HOH A 80 580 580 HOH HOH . F 5 HOH A 81 581 581 HOH HOH . F 5 HOH A 82 582 582 HOH HOH . F 5 HOH A 83 583 583 HOH HOH . F 5 HOH A 84 584 584 HOH HOH . F 5 HOH A 85 585 585 HOH HOH . F 5 HOH A 86 586 586 HOH HOH . F 5 HOH A 87 587 587 HOH HOH . F 5 HOH A 88 588 588 HOH HOH . F 5 HOH A 89 589 589 HOH HOH . F 5 HOH A 90 590 590 HOH HOH . F 5 HOH A 91 591 591 HOH HOH . F 5 HOH A 92 592 592 HOH HOH . F 5 HOH A 93 593 593 HOH HOH . F 5 HOH A 94 594 594 HOH HOH . F 5 HOH A 95 595 595 HOH HOH . F 5 HOH A 96 596 596 HOH HOH . F 5 HOH A 97 597 597 HOH HOH . F 5 HOH A 98 598 598 HOH HOH . F 5 HOH A 99 599 599 HOH HOH . F 5 HOH A 100 600 600 HOH HOH . F 5 HOH A 101 601 601 HOH HOH . F 5 HOH A 102 602 602 HOH HOH . F 5 HOH A 103 603 603 HOH HOH . F 5 HOH A 104 604 604 HOH HOH . F 5 HOH A 105 605 605 HOH HOH . F 5 HOH A 106 606 606 HOH HOH . F 5 HOH A 107 607 607 HOH HOH . F 5 HOH A 108 608 608 HOH HOH . F 5 HOH A 109 609 609 HOH HOH . F 5 HOH A 110 610 610 HOH HOH . F 5 HOH A 111 611 611 HOH HOH . F 5 HOH A 112 612 612 HOH HOH . F 5 HOH A 113 613 613 HOH HOH . F 5 HOH A 114 614 614 HOH HOH . F 5 HOH A 115 615 615 HOH HOH . F 5 HOH A 116 616 616 HOH HOH . F 5 HOH A 117 617 617 HOH HOH . F 5 HOH A 118 618 618 HOH HOH . F 5 HOH A 119 619 619 HOH HOH . F 5 HOH A 120 620 620 HOH HOH . F 5 HOH A 121 621 621 HOH HOH . F 5 HOH A 122 622 622 HOH HOH . F 5 HOH A 123 623 623 HOH HOH . F 5 HOH A 124 624 624 HOH HOH . F 5 HOH A 125 625 625 HOH HOH . F 5 HOH A 126 626 626 HOH HOH . F 5 HOH A 127 627 627 HOH HOH . F 5 HOH A 128 628 628 HOH HOH . F 5 HOH A 129 629 629 HOH HOH . F 5 HOH A 130 630 630 HOH HOH . F 5 HOH A 131 631 631 HOH HOH . F 5 HOH A 132 632 632 HOH HOH . F 5 HOH A 133 633 633 HOH HOH . F 5 HOH A 134 634 634 HOH HOH . F 5 HOH A 135 635 635 HOH HOH . F 5 HOH A 136 636 636 HOH HOH . F 5 HOH A 137 637 637 HOH HOH . F 5 HOH A 138 638 638 HOH HOH . F 5 HOH A 139 639 639 HOH HOH . F 5 HOH A 140 640 640 HOH HOH . F 5 HOH A 141 641 641 HOH HOH . F 5 HOH A 142 642 642 HOH HOH . F 5 HOH A 143 643 643 HOH HOH . F 5 HOH A 144 644 644 HOH HOH . F 5 HOH A 145 645 645 HOH HOH . F 5 HOH A 146 646 646 HOH HOH . F 5 HOH A 147 647 647 HOH HOH . F 5 HOH A 148 648 648 HOH HOH . F 5 HOH A 149 649 649 HOH HOH . F 5 HOH A 150 650 650 HOH HOH . F 5 HOH A 151 651 651 HOH HOH . F 5 HOH A 152 652 652 HOH HOH . F 5 HOH A 153 653 653 HOH HOH . F 5 HOH A 154 654 654 HOH HOH . F 5 HOH A 155 655 655 HOH HOH . F 5 HOH A 156 656 656 HOH HOH . F 5 HOH A 157 657 657 HOH HOH . F 5 HOH A 158 658 658 HOH HOH . F 5 HOH A 159 659 659 HOH HOH . F 5 HOH A 160 660 660 HOH HOH . F 5 HOH A 161 661 661 HOH HOH . F 5 HOH A 162 662 662 HOH HOH . F 5 HOH A 163 663 663 HOH HOH . F 5 HOH A 164 664 664 HOH HOH . F 5 HOH A 165 665 665 HOH HOH . F 5 HOH A 166 666 666 HOH HOH . F 5 HOH A 167 667 667 HOH HOH . F 5 HOH A 168 668 668 HOH HOH . F 5 HOH A 169 669 669 HOH HOH . F 5 HOH A 170 670 670 HOH HOH . F 5 HOH A 171 671 671 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 Q08 . . . E 4 21.814 -2.207 12.146 1 31.71 ? O2 Q08 404 A 1 HETATM 2 P P Q08 . . . E 4 21.233 -2.655 10.892 1 32.02 ? P Q08 404 A 1 HETATM 3 O O Q08 . . . E 4 19.699 -3.112 10.874 1 28.85 ? O Q08 404 A 1 HETATM 4 O O1 Q08 . . . E 4 21.316 -1.296 10.101 1 26.34 ? O1 Q08 404 A 1 HETATM 5 C C7 Q08 . . . E 4 22.308 -3.734 9.86 0.5 29.63 ? C7 Q08 404 A 1 HETATM 6 N N Q08 . . . E 4 23.58 -2.923 9.433 1 22.15 ? N Q08 404 A 1 HETATM 7 C C3 Q08 . . . E 4 22.289 -5.183 10.48 1 40.39 ? C3 Q08 404 A 1 HETATM 8 C C4 Q08 . . . E 4 23.392 -6.154 9.967 1 38.49 ? C4 Q08 404 A 1 HETATM 9 C C5 Q08 . . . E 4 23.283 -7.525 10.578 1 43.46 ? C5 Q08 404 A 1 HETATM 10 C C6 Q08 . . . E 4 23.739 -8.679 9.721 1 42.71 ? C6 Q08 404 A 1 HETATM 11 C C2 Q08 . . . E 4 22.102 -5.368 12.033 1 41.34 ? C2 Q08 404 A 1 HETATM 12 C C1 Q08 . . . E 4 21.695 -6.747 12.658 0.8 40.38 ? C1 Q08 404 A 1 HETATM 13 C C Q08 . . . E 4 20.811 -6.806 13.943 1 37.78 ? C Q08 404 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #