data_4U1I # _model_server_result.job_id xyx2GyqaXtmYgQGI7tFn5g _model_server_result.datetime_utc '2024-11-04 23:21:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u1i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":305}' # _entry.id 4U1I # _exptl.entry_id 4U1I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4U1I _cell.length_a 51.25 _cell.length_b 81.49 _cell.length_c 110.14 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U1I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details Trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 102 A CYS 101 1_555 A SG CYS 165 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf2 A SG CYS 204 A CYS 203 1_555 A SG CYS 260 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 4U1I _atom_sites.fract_transf_matrix[1][1] 0.019512 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009079 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO A 1 301 302 EDO EDO . E 4 EDO A 1 302 303 EDO EDO . F 4 EDO A 1 303 304 EDO EDO . G 4 EDO A 1 304 306 EDO EDO . H 5 GOL A 1 305 311 GOL GOL . I 6 SO4 A 1 306 321 SO4 SO4 . J 4 EDO B 1 301 301 EDO EDO . K 4 EDO B 1 302 305 EDO EDO . L 7 HOH A 1 401 654 HOH HOH . L 7 HOH A 2 402 649 HOH HOH . L 7 HOH A 3 403 547 HOH HOH . L 7 HOH A 4 404 552 HOH HOH . L 7 HOH A 5 405 486 HOH HOH . L 7 HOH A 6 406 510 HOH HOH . L 7 HOH A 7 407 644 HOH HOH . L 7 HOH A 8 408 603 HOH HOH . L 7 HOH A 9 409 477 HOH HOH . L 7 HOH A 10 410 531 HOH HOH . L 7 HOH A 11 411 461 HOH HOH . L 7 HOH A 12 412 599 HOH HOH . L 7 HOH A 13 413 628 HOH HOH . L 7 HOH A 14 414 558 HOH HOH . L 7 HOH A 15 415 617 HOH HOH . L 7 HOH A 16 416 445 HOH HOH . L 7 HOH A 17 417 571 HOH HOH . L 7 HOH A 18 418 484 HOH HOH . L 7 HOH A 19 419 523 HOH HOH . L 7 HOH A 20 420 620 HOH HOH . L 7 HOH A 21 421 551 HOH HOH . L 7 HOH A 22 422 434 HOH HOH . L 7 HOH A 23 423 512 HOH HOH . L 7 HOH A 24 424 439 HOH HOH . L 7 HOH A 25 425 524 HOH HOH . L 7 HOH A 26 426 402 HOH HOH . L 7 HOH A 27 427 425 HOH HOH . L 7 HOH A 28 428 452 HOH HOH . L 7 HOH A 29 429 488 HOH HOH . L 7 HOH A 30 430 447 HOH HOH . L 7 HOH A 31 431 616 HOH HOH . L 7 HOH A 32 432 608 HOH HOH . L 7 HOH A 33 433 562 HOH HOH . L 7 HOH A 34 434 585 HOH HOH . L 7 HOH A 35 435 513 HOH HOH . L 7 HOH A 36 436 582 HOH HOH . L 7 HOH A 37 437 626 HOH HOH . L 7 HOH A 38 438 655 HOH HOH . L 7 HOH A 39 439 479 HOH HOH . L 7 HOH A 40 440 511 HOH HOH . L 7 HOH A 41 441 542 HOH HOH . L 7 HOH A 42 442 575 HOH HOH . L 7 HOH A 43 443 443 HOH HOH . L 7 HOH A 44 444 414 HOH HOH . L 7 HOH A 45 445 631 HOH HOH . L 7 HOH A 46 446 560 HOH HOH . L 7 HOH A 47 447 410 HOH HOH . L 7 HOH A 48 448 449 HOH HOH . L 7 HOH A 49 449 442 HOH HOH . L 7 HOH A 50 450 401 HOH HOH . L 7 HOH A 51 451 522 HOH HOH . L 7 HOH A 52 452 436 HOH HOH . L 7 HOH A 53 453 476 HOH HOH . L 7 HOH A 54 454 405 HOH HOH . L 7 HOH A 55 455 473 HOH HOH . L 7 HOH A 56 456 422 HOH HOH . L 7 HOH A 57 457 419 HOH HOH . L 7 HOH A 58 458 464 HOH HOH . L 7 HOH A 59 459 481 HOH HOH . L 7 HOH A 60 460 508 HOH HOH . L 7 HOH A 61 461 584 HOH HOH . L 7 HOH A 62 462 499 HOH HOH . L 7 HOH A 63 463 615 HOH HOH . L 7 HOH A 64 464 408 HOH HOH . L 7 HOH A 65 465 625 HOH HOH . L 7 HOH A 66 466 427 HOH HOH . L 7 HOH A 67 467 441 HOH HOH . L 7 HOH A 68 468 470 HOH HOH . L 7 HOH A 69 469 528 HOH HOH . L 7 HOH A 70 470 633 HOH HOH . L 7 HOH A 71 471 556 HOH HOH . L 7 HOH A 72 472 580 HOH HOH . L 7 HOH A 73 473 527 HOH HOH . L 7 HOH A 74 474 593 HOH HOH . L 7 HOH A 75 475 421 HOH HOH . L 7 HOH A 76 476 404 HOH HOH . L 7 HOH A 77 477 469 HOH HOH . L 7 HOH A 78 478 412 HOH HOH . L 7 HOH A 79 479 621 HOH HOH . L 7 HOH A 80 480 573 HOH HOH . L 7 HOH A 81 481 518 HOH HOH . L 7 HOH A 82 482 650 HOH HOH . L 7 HOH A 83 483 411 HOH HOH . L 7 HOH A 84 484 509 HOH HOH . L 7 HOH A 85 485 446 HOH HOH . L 7 HOH A 86 486 557 HOH HOH . L 7 HOH A 87 487 624 HOH HOH . L 7 HOH A 88 488 429 HOH HOH . L 7 HOH A 89 489 444 HOH HOH . L 7 HOH A 90 490 437 HOH HOH . L 7 HOH A 91 491 440 HOH HOH . L 7 HOH A 92 492 540 HOH HOH . L 7 HOH A 93 493 561 HOH HOH . L 7 HOH A 94 494 602 HOH HOH . L 7 HOH A 95 495 538 HOH HOH . L 7 HOH A 96 496 474 HOH HOH . L 7 HOH A 97 497 545 HOH HOH . L 7 HOH A 98 498 596 HOH HOH . L 7 HOH A 99 499 413 HOH HOH . L 7 HOH A 100 500 406 HOH HOH . L 7 HOH A 101 501 574 HOH HOH . L 7 HOH A 102 502 640 HOH HOH . L 7 HOH A 103 503 554 HOH HOH . L 7 HOH A 104 504 454 HOH HOH . L 7 HOH A 105 505 424 HOH HOH . L 7 HOH A 106 506 611 HOH HOH . L 7 HOH A 107 507 555 HOH HOH . L 7 HOH A 108 508 451 HOH HOH . L 7 HOH A 109 509 565 HOH HOH . L 7 HOH A 110 510 492 HOH HOH . L 7 HOH A 111 511 504 HOH HOH . L 7 HOH A 112 512 503 HOH HOH . L 7 HOH A 113 513 460 HOH HOH . L 7 HOH A 114 514 569 HOH HOH . L 7 HOH A 115 515 577 HOH HOH . L 7 HOH A 116 516 516 HOH HOH . L 7 HOH A 117 517 475 HOH HOH . L 7 HOH A 118 518 614 HOH HOH . L 7 HOH A 119 519 536 HOH HOH . L 7 HOH A 120 520 618 HOH HOH . L 7 HOH A 121 521 407 HOH HOH . L 7 HOH A 122 522 415 HOH HOH . L 7 HOH A 123 523 635 HOH HOH . L 7 HOH A 124 524 493 HOH HOH . L 7 HOH A 125 525 534 HOH HOH . L 7 HOH A 126 526 417 HOH HOH . L 7 HOH A 127 527 420 HOH HOH . L 7 HOH A 128 528 525 HOH HOH . L 7 HOH A 129 529 537 HOH HOH . L 7 HOH A 130 530 462 HOH HOH . L 7 HOH A 131 531 515 HOH HOH . L 7 HOH A 132 532 634 HOH HOH . L 7 HOH A 133 533 543 HOH HOH . L 7 HOH A 134 534 600 HOH HOH . L 7 HOH A 135 535 619 HOH HOH . L 7 HOH A 136 536 642 HOH HOH . L 7 HOH A 137 537 532 HOH HOH . L 7 HOH A 138 538 500 HOH HOH . L 7 HOH A 139 539 450 HOH HOH . L 7 HOH A 140 540 435 HOH HOH . L 7 HOH A 141 541 549 HOH HOH . L 7 HOH A 142 542 501 HOH HOH . L 7 HOH A 143 543 507 HOH HOH . L 7 HOH A 144 544 505 HOH HOH . L 7 HOH A 145 545 652 HOH HOH . L 7 HOH A 146 546 529 HOH HOH . L 7 HOH A 147 547 548 HOH HOH . L 7 HOH A 148 548 535 HOH HOH . L 7 HOH A 149 549 433 HOH HOH . L 7 HOH A 150 550 448 HOH HOH . L 7 HOH A 151 551 472 HOH HOH . L 7 HOH A 152 552 494 HOH HOH . L 7 HOH A 153 553 613 HOH HOH . L 7 HOH A 154 554 438 HOH HOH . L 7 HOH A 155 555 576 HOH HOH . L 7 HOH A 156 556 567 HOH HOH . L 7 HOH A 157 557 658 HOH HOH . L 7 HOH A 158 558 578 HOH HOH . L 7 HOH A 159 559 597 HOH HOH . L 7 HOH A 160 560 416 HOH HOH . L 7 HOH A 161 561 645 HOH HOH . L 7 HOH A 162 562 455 HOH HOH . L 7 HOH A 163 563 609 HOH HOH . L 7 HOH A 164 564 546 HOH HOH . L 7 HOH A 165 565 480 HOH HOH . L 7 HOH A 166 566 498 HOH HOH . L 7 HOH A 167 567 487 HOH HOH . L 7 HOH A 168 568 559 HOH HOH . L 7 HOH A 169 569 651 HOH HOH . L 7 HOH A 170 570 657 HOH HOH . L 7 HOH A 171 571 612 HOH HOH . L 7 HOH A 172 572 641 HOH HOH . L 7 HOH A 173 573 550 HOH HOH . L 7 HOH A 174 574 519 HOH HOH . L 7 HOH A 175 575 403 HOH HOH . L 7 HOH A 176 576 592 HOH HOH . L 7 HOH A 177 577 622 HOH HOH . L 7 HOH A 178 578 497 HOH HOH . L 7 HOH A 179 579 568 HOH HOH . L 7 HOH A 180 580 607 HOH HOH . L 7 HOH A 181 581 485 HOH HOH . L 7 HOH A 182 582 502 HOH HOH . L 7 HOH A 183 583 646 HOH HOH . L 7 HOH A 184 584 588 HOH HOH . L 7 HOH A 185 585 520 HOH HOH . L 7 HOH A 186 586 605 HOH HOH . L 7 HOH A 187 587 430 HOH HOH . L 7 HOH A 188 588 632 HOH HOH . L 7 HOH A 189 589 604 HOH HOH . L 7 HOH A 190 590 496 HOH HOH . L 7 HOH A 191 591 489 HOH HOH . L 7 HOH A 192 592 495 HOH HOH . L 7 HOH A 193 593 639 HOH HOH . M 7 HOH B 1 401 653 HOH HOH . M 7 HOH B 2 402 564 HOH HOH . M 7 HOH B 3 403 629 HOH HOH . M 7 HOH B 4 404 514 HOH HOH . M 7 HOH B 5 405 530 HOH HOH . M 7 HOH B 6 406 630 HOH HOH . M 7 HOH B 7 407 595 HOH HOH . M 7 HOH B 8 408 517 HOH HOH . M 7 HOH B 9 409 423 HOH HOH . M 7 HOH B 10 410 591 HOH HOH . M 7 HOH B 11 411 637 HOH HOH . M 7 HOH B 12 412 453 HOH HOH . M 7 HOH B 13 413 627 HOH HOH . M 7 HOH B 14 414 466 HOH HOH . M 7 HOH B 15 415 490 HOH HOH . M 7 HOH B 16 416 590 HOH HOH . M 7 HOH B 17 417 456 HOH HOH . M 7 HOH B 18 418 409 HOH HOH . M 7 HOH B 19 419 643 HOH HOH . M 7 HOH B 20 420 587 HOH HOH . M 7 HOH B 21 421 579 HOH HOH . M 7 HOH B 22 422 526 HOH HOH . M 7 HOH B 23 423 506 HOH HOH . M 7 HOH B 24 424 598 HOH HOH . M 7 HOH B 25 425 432 HOH HOH . M 7 HOH B 26 426 656 HOH HOH . M 7 HOH B 27 427 478 HOH HOH . M 7 HOH B 28 428 563 HOH HOH . M 7 HOH B 29 429 458 HOH HOH . M 7 HOH B 30 430 572 HOH HOH . M 7 HOH B 31 431 431 HOH HOH . M 7 HOH B 32 432 471 HOH HOH . M 7 HOH B 33 433 426 HOH HOH . M 7 HOH B 34 434 636 HOH HOH . M 7 HOH B 35 435 553 HOH HOH . M 7 HOH B 36 436 467 HOH HOH . M 7 HOH B 37 437 482 HOH HOH . M 7 HOH B 38 438 566 HOH HOH . M 7 HOH B 39 439 463 HOH HOH . M 7 HOH B 40 440 457 HOH HOH . M 7 HOH B 41 441 594 HOH HOH . M 7 HOH B 42 442 539 HOH HOH . M 7 HOH B 43 443 581 HOH HOH . M 7 HOH B 44 444 459 HOH HOH . M 7 HOH B 45 445 533 HOH HOH . M 7 HOH B 46 446 589 HOH HOH . M 7 HOH B 47 447 610 HOH HOH . M 7 HOH B 48 448 541 HOH HOH . M 7 HOH B 49 449 418 HOH HOH . M 7 HOH B 50 450 544 HOH HOH . M 7 HOH B 51 451 659 HOH HOH . M 7 HOH B 52 452 491 HOH HOH . M 7 HOH B 53 453 570 HOH HOH . M 7 HOH B 54 454 468 HOH HOH . M 7 HOH B 55 455 465 HOH HOH . M 7 HOH B 56 456 606 HOH HOH . M 7 HOH B 57 457 601 HOH HOH . N 7 HOH C 1 101 521 HOH HOH . N 7 HOH C 2 102 623 HOH HOH . N 7 HOH C 3 103 586 HOH HOH . N 7 HOH C 4 104 483 HOH HOH . N 7 HOH C 5 105 638 HOH HOH . N 7 HOH C 6 106 428 HOH HOH . N 7 HOH C 7 107 648 HOH HOH . N 7 HOH C 8 108 583 HOH HOH . N 7 HOH C 9 109 647 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 5 -32.44 -11.014 18.379 1 34.05 ? C1 GOL 305 A 1 HETATM 2 O O1 GOL . . . H 5 -31.584 -10.316 17.276 1 22.56 ? O1 GOL 305 A 1 HETATM 3 C C2 GOL . . . H 5 -33.218 -12.413 18.367 1 30.75 ? C2 GOL 305 A 1 HETATM 4 O O2 GOL . . . H 5 -33.832 -13.123 19.725 1 27.99 ? O2 GOL 305 A 1 HETATM 5 C C3 GOL . . . H 5 -34.069 -12.278 17.119 1 30.39 ? C3 GOL 305 A 1 HETATM 6 O O3 GOL . . . H 5 -33.406 -12.739 15.817 1 35.18 ? O3 GOL 305 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #