data_4U1R # _model_server_result.job_id 7A6O3JYyKLb5IjsqaHbKhQ _model_server_result.datetime_utc '2025-09-01 07:30:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u1r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 4U1R # _exptl.entry_id 4U1R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4U1R _cell.length_a 132.896 _cell.length_b 132.896 _cell.length_c 399.105 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U1R _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 J N N ? 2 M N N ? 2 R N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4U1R _atom_sites.fract_transf_matrix[1][1] 0.007525 _atom_sites.fract_transf_matrix[1][2] 0.004344 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002506 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ATP A 1 801 800 ATP ATP . F 3 PO4 A 1 802 801 PO4 PO4 . G 3 PO4 A 1 803 802 PO4 PO4 . H 3 PO4 A 1 804 803 PO4 PO4 . I 3 PO4 A 1 805 802 PO4 PO4 . J 2 ATP B 1 801 800 ATP ATP . K 3 PO4 B 1 802 801 PO4 PO4 . L 3 PO4 B 1 803 803 PO4 PO4 . M 2 ATP C 1 801 800 ATP ATP . N 3 PO4 C 1 802 801 PO4 PO4 . O 3 PO4 C 1 803 802 PO4 PO4 . P 3 PO4 C 1 804 803 PO4 PO4 . Q 3 PO4 C 1 805 802 PO4 PO4 . R 2 ATP D 1 801 800 ATP ATP . S 3 PO4 D 1 802 801 PO4 PO4 . T 3 PO4 D 1 803 803 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 2 64.15 199.197 430.603 1 88.16 ? PG ATP 801 A 1 HETATM 2 O O1G ATP . . . E 2 64.624 198.969 429.189 1 83.24 ? O1G ATP 801 A 1 HETATM 3 O O2G ATP . . . E 2 62.884 200.045 430.682 1 87.17 -1 O2G ATP 801 A 1 HETATM 4 O O3G ATP . . . E 2 64.199 197.911 431.414 1 75.43 ? O3G ATP 801 A 1 HETATM 5 P PB ATP . . . E 2 65.511 200.753 432.762 1 70.34 ? PB ATP 801 A 1 HETATM 6 O O1B ATP . . . E 2 65.24 202.24 432.561 1 68.27 -1 O1B ATP 801 A 1 HETATM 7 O O2B ATP . . . E 2 64.715 199.874 433.685 1 62.06 ? O2B ATP 801 A 1 HETATM 8 O O3B ATP . . . E 2 65.332 200.151 431.242 1 86.9 ? O3B ATP 801 A 1 HETATM 9 P PA ATP . . . E 2 67.836 199.115 433.126 1 57.68 ? PA ATP 801 A 1 HETATM 10 O O1A ATP . . . E 2 69.251 199.232 432.566 1 54.92 -1 O1A ATP 801 A 1 HETATM 11 O O2A ATP . . . E 2 66.913 197.98 432.738 1 53.24 ? O2A ATP 801 A 1 HETATM 12 O O3A ATP . . . E 2 67.081 200.548 433.116 1 60.12 ? O3A ATP 801 A 1 HETATM 13 O O5' ATP . . . E 2 68.076 198.955 434.703 1 61.58 ? O5' ATP 801 A 1 HETATM 14 C C5' ATP . . . E 2 68.647 200.03 435.452 1 60.36 ? C5' ATP 801 A 1 HETATM 15 C C4' ATP . . . E 2 69.534 199.476 436.562 1 60.1 ? C4' ATP 801 A 1 HETATM 16 O O4' ATP . . . E 2 68.806 198.6 437.416 1 62.49 ? O4' ATP 801 A 1 HETATM 17 C C3' ATP . . . E 2 70.678 198.626 436.082 1 59.25 ? C3' ATP 801 A 1 HETATM 18 O O3' ATP . . . E 2 71.753 199.485 435.75 1 59.46 ? O3' ATP 801 A 1 HETATM 19 C C2' ATP . . . E 2 70.995 197.744 437.266 1 60.3 ? C2' ATP 801 A 1 HETATM 20 O O2' ATP . . . E 2 71.939 198.386 438.118 1 57.42 ? O2' ATP 801 A 1 HETATM 21 C C1' ATP . . . E 2 69.67 197.622 437.982 1 60.25 ? C1' ATP 801 A 1 HETATM 22 N N9 ATP . . . E 2 69.043 196.337 437.698 1 60.22 ? N9 ATP 801 A 1 HETATM 23 C C8 ATP . . . E 2 68.319 196.044 436.595 1 60.93 ? C8 ATP 801 A 1 HETATM 24 N N7 ATP . . . E 2 67.881 194.745 436.654 1 62.52 ? N7 ATP 801 A 1 HETATM 25 C C5 ATP . . . E 2 68.319 194.229 437.815 1 60.23 ? C5 ATP 801 A 1 HETATM 26 C C6 ATP . . . E 2 68.215 192.942 438.498 1 59.54 ? C6 ATP 801 A 1 HETATM 27 N N6 ATP . . . E 2 67.541 191.95 437.92 1 60.41 ? N6 ATP 801 A 1 HETATM 28 N N1 ATP . . . E 2 68.823 192.77 439.679 1 60.04 ? N1 ATP 801 A 1 HETATM 29 C C2 ATP . . . E 2 69.504 193.788 440.243 1 61.79 ? C2 ATP 801 A 1 HETATM 30 N N3 ATP . . . E 2 69.635 195.005 439.684 1 59.38 ? N3 ATP 801 A 1 HETATM 31 C C4 ATP . . . E 2 69.077 195.281 438.498 1 59.81 ? C4 ATP 801 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #