data_4U1R
#
_model_server_result.job_id            jL7p-HQDR3rbmz-gqzniGg 
_model_server_result.datetime_utc      '2025-08-31 17:41:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4u1r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":801}' 
#
_entry.id    4U1R 
#
_exptl.entry_id    4U1R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4U1R 
_cell.length_a            132.896 
_cell.length_b            132.896 
_cell.length_c            399.105 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4U1R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 J N N 
? 2 M N N 
? 2 R N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     4U1R 
_atom_sites.fract_transf_matrix[1][1]    0.007525 
_atom_sites.fract_transf_matrix[1][2]    0.004344 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008689 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002506 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ATP A 1 801 800 ATP ATP . 
F 3 PO4 A 1 802 801 PO4 PO4 . 
G 3 PO4 A 1 803 802 PO4 PO4 . 
H 3 PO4 A 1 804 803 PO4 PO4 . 
I 3 PO4 A 1 805 802 PO4 PO4 . 
J 2 ATP B 1 801 800 ATP ATP . 
K 3 PO4 B 1 802 801 PO4 PO4 . 
L 3 PO4 B 1 803 803 PO4 PO4 . 
M 2 ATP C 1 801 800 ATP ATP . 
N 3 PO4 C 1 802 801 PO4 PO4 . 
O 3 PO4 C 1 803 802 PO4 PO4 . 
P 3 PO4 C 1 804 803 PO4 PO4 . 
Q 3 PO4 C 1 805 802 PO4 PO4 . 
R 2 ATP D 1 801 800 ATP ATP . 
S 3 PO4 D 1 802 801 PO4 PO4 . 
T 3 PO4 D 1 803 803 PO4 PO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . J 2 71.596 224.322 396.633 1 64.15 ? PG ATP 801 B 1 
HETATM 2 O O1G ATP . . . J 2 71.768 222.907 396.072 1 62.39 ? O1G ATP 801 B 1 
HETATM 3 O O2G ATP . . . J 2 70.69 224.473 397.885 1 51.59 -1 O2G ATP 801 B 1 
HETATM 4 O O3G ATP . . . J 2 72.965 224.932 396.9 1 59.58 ? O3G ATP 801 B 1 
HETATM 5 P PB ATP . . . J 2 69.323 224.963 394.819 1 40.69 ? PB ATP 801 B 1 
HETATM 6 O O1B ATP . . . J 2 68.956 226.033 393.868 1 43.93 ? O1B ATP 801 B 1 
HETATM 7 O O2B ATP . . . J 2 68.434 225.079 396.026 1 48.12 -1 O2B ATP 801 B 1 
HETATM 8 O O3B ATP . . . J 2 70.912 225.019 395.262 1 48.96 ? O3B ATP 801 B 1 
HETATM 9 P PA ATP . . . J 2 69.527 222.622 393.177 1 42 ? PA ATP 801 B 1 
HETATM 10 O O1A ATP . . . J 2 70.928 223.025 392.796 1 40.54 ? O1A ATP 801 B 1 
HETATM 11 O O2A ATP . . . J 2 69.149 221.159 393.368 1 38.92 -1 O2A ATP 801 B 1 
HETATM 12 O O3A ATP . . . J 2 68.913 223.47 394.388 1 40.71 ? O3A ATP 801 B 1 
HETATM 13 O O5' ATP . . . J 2 68.531 223.242 392.112 1 43.59 ? O5' ATP 801 B 1 
HETATM 14 C C5' ATP . . . J 2 68.04 222.202 391.275 1 47.51 ? C5' ATP 801 B 1 
HETATM 15 C C4' ATP . . . J 2 67.056 222.709 390.267 1 46.43 ? C4' ATP 801 B 1 
HETATM 16 O O4' ATP . . . J 2 67.452 223.977 389.779 1 47.89 ? O4' ATP 801 B 1 
HETATM 17 C C3' ATP . . . J 2 67.054 221.729 389.139 1 48.09 ? C3' ATP 801 B 1 
HETATM 18 O O3' ATP . . . J 2 65.854 220.956 389.244 1 53.19 ? O3' ATP 801 B 1 
HETATM 19 C C2' ATP . . . J 2 67.048 222.584 387.928 1 47.57 ? C2' ATP 801 B 1 
HETATM 20 O O2' ATP . . . J 2 65.69 222.751 387.564 1 48.62 ? O2' ATP 801 B 1 
HETATM 21 C C1' ATP . . . J 2 67.619 223.912 388.368 1 47 ? C1' ATP 801 B 1 
HETATM 22 N N9 ATP . . . J 2 69.052 223.913 388.003 1 47 ? N9 ATP 801 B 1 
HETATM 23 C C8 ATP . . . J 2 70.098 223.683 388.813 1 46.27 ? C8 ATP 801 B 1 
HETATM 24 N N7 ATP . . . J 2 71.255 223.742 388.116 1 46.98 ? N7 ATP 801 B 1 
HETATM 25 C C5 ATP . . . J 2 70.941 224.014 386.839 1 46.62 ? C5 ATP 801 B 1 
HETATM 26 C C6 ATP . . . J 2 71.678 224.199 385.592 1 45.43 ? C6 ATP 801 B 1 
HETATM 27 N N6 ATP . . . J 2 73.003 224.11 385.56 1 44.47 ? N6 ATP 801 B 1 
HETATM 28 N N1 ATP . . . J 2 70.977 224.439 384.482 1 49.54 ? N1 ATP 801 B 1 
HETATM 29 C C2 ATP . . . J 2 69.628 224.523 384.478 1 51.36 ? C2 ATP 801 B 1 
HETATM 30 N N3 ATP . . . J 2 68.889 224.376 385.594 1 49.13 ? N3 ATP 801 B 1 
HETATM 31 C C4 ATP . . . J 2 69.492 224.128 386.773 1 46.74 ? C4 ATP 801 B 1 
#
_model_server_stats.io_time_ms              99 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           394 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#