data_4U1W # _model_server_result.job_id '_cXbhawMh_wa5eNoP1j8YA' _model_server_result.datetime_utc '2024-11-04 23:32:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u1w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":901}' # _entry.id 4U1W # _exptl.entry_id 4U1W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 213.23 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4U1W _cell.length_a 104.5 _cell.length_b 151.11 _cell.length_c 332.53 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U1W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 J N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 61 1_555 A SG CYS 306 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 711 A CYS 718 1_555 A SG CYS 766 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 54 B CYS 61 1_555 B SG CYS 306 B CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 711 B CYS 718 1_555 B SG CYS 766 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 C SG CYS 54 C CYS 61 1_555 C SG CYS 306 C CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 C SG CYS 711 C CYS 718 1_555 C SG CYS 766 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 D SG CYS 54 D CYS 61 1_555 D SG CYS 306 D CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 D SG CYS 711 D CYS 718 1_555 D SG CYS 766 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 346 A ASN 353 1_555 F C1 NAG . A NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale2 B ND2 ASN 346 B ASN 353 1_555 I C1 NAG . B NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale3 C ND2 ASN 346 C ASN 353 1_555 K C1 NAG . C NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale4 D ND2 ASN 346 D ASN 353 1_555 N C1 NAG . D NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C10 H15 N O4' _chem_comp.formula_weight 213.23 _chem_comp.id KAI _chem_comp.mon_nstd_flag . _chem_comp.name 3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms KAINATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CD KAI sing 240 n n N CA KAI sing 241 n n N HN1 KAI sing 242 n n CD CG KAI sing 243 n n CD HD1 KAI sing 244 n n CD HD2 KAI sing 245 n n CD1 CG2 KAI doub 246 n n CD1 HD11 KAI sing 247 n n CD1 HD12 KAI sing 248 n n CD2 CG2 KAI sing 249 n n CD2 HD21 KAI sing 250 n n CD2 HD22 KAI sing 251 n n CD2 HD23 KAI sing 252 n n CA CB KAI sing 253 n n CA C KAI sing 254 n n CA HA KAI sing 255 n n CB CB1 KAI sing 256 n n CB CG KAI sing 257 n n CB HB KAI sing 258 n n CB1 CG1 KAI sing 259 n n CB1 HB11 KAI sing 260 n n CB1 HB12 KAI sing 261 n n CG CG2 KAI sing 262 n n CG HG KAI sing 263 n n CG1 OD1 KAI sing 264 n n CG1 OD2 KAI doub 265 n n C O KAI doub 266 n n C OXT KAI sing 267 n n OD1 HOD1 KAI sing 268 n n OXT HXT KAI sing 269 n n # _atom_sites.entry_id 4U1W _atom_sites.fract_transf_matrix[1][1] 0.009569 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006618 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003007 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 KAI A 1 901 999 KAI KAI . F 3 NAG A 1 902 1001 NAG NAG . G 4 FWF A 1 903 1 FWF FWF . H 2 KAI B 1 901 999 KAI KAI . I 3 NAG B 1 902 1001 NAG NAG . J 2 KAI C 1 901 999 KAI KAI . K 3 NAG C 1 902 1001 NAG NAG . L 4 FWF C 1 903 1 FWF FWF . M 2 KAI D 1 901 999 KAI KAI . N 3 NAG D 1 902 1001 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N KAI . . . E 2 -26.815 -9.362 -106.463 1 124.2 ? N KAI 901 A 1 HETATM 2 C CD KAI . . . E 2 -25.922 -9.31 -107.604 1 118.47 ? CD KAI 901 A 1 HETATM 3 C CD1 KAI . . . E 2 -25.506 -10.251 -110.18 1 106.03 ? CD1 KAI 901 A 1 HETATM 4 C CD2 KAI . . . E 2 -24.497 -12.379 -109.546 1 116.91 ? CD2 KAI 901 A 1 HETATM 5 C CA KAI . . . E 2 -27.129 -10.711 -106.037 1 122.59 ? CA KAI 901 A 1 HETATM 6 C CB KAI . . . E 2 -26.654 -11.579 -107.189 1 122.47 ? CB KAI 901 A 1 HETATM 7 C CB1 KAI . . . E 2 -27.751 -11.767 -108.23 1 133.55 ? CB1 KAI 901 A 1 HETATM 8 C CG KAI . . . E 2 -25.508 -10.766 -107.776 1 112.58 ? CG KAI 901 A 1 HETATM 9 C CG1 KAI . . . E 2 -28.996 -12.458 -107.719 1 135.4 ? CG1 KAI 901 A 1 HETATM 10 C CG2 KAI . . . E 2 -25.194 -11.093 -109.211 1 109.79 ? CG2 KAI 901 A 1 HETATM 11 C C KAI . . . E 2 -26.382 -11.058 -104.784 1 124.64 ? C KAI 901 A 1 HETATM 12 O O KAI . . . E 2 -25.493 -11.936 -104.835 1 122.98 ? O KAI 901 A 1 HETATM 13 O OD1 KAI . . . E 2 -28.936 -13.198 -106.712 1 132.79 ? OD1 KAI 901 A 1 HETATM 14 O OD2 KAI . . . E 2 -30.057 -12.263 -108.354 1 132.57 ? OD2 KAI 901 A 1 HETATM 15 O OXT KAI . . . E 2 -26.672 -10.451 -103.73 1 128.04 ? OXT KAI 901 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #