data_4U1W # _model_server_result.job_id jiIUAPnCqsY8THVNejuj0Q _model_server_result.datetime_utc '2024-11-04 23:30:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u1w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":902}' # _entry.id 4U1W # _exptl.entry_id 4U1W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4U1W _cell.length_a 104.5 _cell.length_b 151.11 _cell.length_c 332.53 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U1W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 K N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 61 1_555 A SG CYS 306 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 711 A CYS 718 1_555 A SG CYS 766 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 54 B CYS 61 1_555 B SG CYS 306 B CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 711 B CYS 718 1_555 B SG CYS 766 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 C SG CYS 54 C CYS 61 1_555 C SG CYS 306 C CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 C SG CYS 711 C CYS 718 1_555 C SG CYS 766 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 D SG CYS 54 D CYS 61 1_555 D SG CYS 306 D CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 D SG CYS 711 D CYS 718 1_555 D SG CYS 766 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 346 A ASN 353 1_555 F C1 NAG . A NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale2 B ND2 ASN 346 B ASN 353 1_555 I C1 NAG . B NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale3 C ND2 ASN 346 C ASN 353 1_555 K C1 NAG . C NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale4 D ND2 ASN 346 D ASN 353 1_555 N C1 NAG . D NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 334 n n C1 O1 NAG sing 335 n n C1 O5 NAG sing 336 n n C1 H1 NAG sing 337 n n C2 C3 NAG sing 338 n n C2 N2 NAG sing 339 n n C2 H2 NAG sing 340 n n C3 C4 NAG sing 341 n n C3 O3 NAG sing 342 n n C3 H3 NAG sing 343 n n C4 C5 NAG sing 344 n n C4 O4 NAG sing 345 n n C4 H4 NAG sing 346 n n C5 C6 NAG sing 347 n n C5 O5 NAG sing 348 n n C5 H5 NAG sing 349 n n C6 O6 NAG sing 350 n n C6 H61 NAG sing 351 n n C6 H62 NAG sing 352 n n C7 C8 NAG sing 353 n n C7 N2 NAG sing 354 n n C7 O7 NAG doub 355 n n C8 H81 NAG sing 356 n n C8 H82 NAG sing 357 n n C8 H83 NAG sing 358 n n N2 HN2 NAG sing 359 n n O1 HO1 NAG sing 360 n n O3 HO3 NAG sing 361 n n O4 HO4 NAG sing 362 n n O6 HO6 NAG sing 363 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4U1W _atom_sites.fract_transf_matrix[1][1] 0.009569 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006618 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003007 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 KAI A 1 901 999 KAI KAI . F 3 NAG A 1 902 1001 NAG NAG . G 4 FWF A 1 903 1 FWF FWF . H 2 KAI B 1 901 999 KAI KAI . I 3 NAG B 1 902 1001 NAG NAG . J 2 KAI C 1 901 999 KAI KAI . K 3 NAG C 1 902 1001 NAG NAG . L 4 FWF C 1 903 1 FWF FWF . M 2 KAI D 1 901 999 KAI KAI . N 3 NAG D 1 902 1001 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . N 3 -82.884 12.154 -42.151 1 136.11 ? C1 NAG 902 D 1 HETATM 2 C C2 NAG . . . N 3 -84.189 12.797 -42.565 1 147.8 ? C2 NAG 902 D 1 HETATM 3 C C3 NAG . . . N 3 -83.987 14.305 -42.759 1 150.35 ? C3 NAG 902 D 1 HETATM 4 C C4 NAG . . . N 3 -83.337 14.917 -41.521 1 157.48 ? C4 NAG 902 D 1 HETATM 5 C C5 NAG . . . N 3 -82.082 14.132 -41.146 1 159.33 ? C5 NAG 902 D 1 HETATM 6 C C6 NAG . . . N 3 -81.446 14.595 -39.852 1 168.97 ? C6 NAG 902 D 1 HETATM 7 C C7 NAG . . . N 3 -85.954 11.695 -43.838 1 158.75 ? C7 NAG 902 D 1 HETATM 8 C C8 NAG . . . N 3 -86.341 11.057 -45.144 1 156.72 ? C8 NAG 902 D 1 HETATM 9 N N2 NAG . . . N 3 -84.718 12.185 -43.76 1 153.28 ? N2 NAG 902 D 1 HETATM 10 O O3 NAG . . . N 3 -85.227 14.941 -43.059 1 158.32 ? O3 NAG 902 D 1 HETATM 11 O O4 NAG . . . N 3 -82.972 16.264 -41.786 1 162.79 ? O4 NAG 902 D 1 HETATM 12 O O5 NAG . . . N 3 -82.398 12.734 -40.988 1 153.44 ? O5 NAG 902 D 1 HETATM 13 O O6 NAG . . . N 3 -80.284 13.831 -39.56 1 172.54 ? O6 NAG 902 D 1 HETATM 14 O O7 NAG . . . N 3 -86.738 11.758 -42.897 1 163.7 ? O7 NAG 902 D 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #