data_4U1Y # _model_server_result.job_id F-o5E2EmA9lOkt6iWYf2HQ _model_server_result.datetime_utc '2024-11-23 22:24:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u1y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":2001}' # _entry.id 4U1Y # _exptl.entry_id 4U1Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4U1Y _cell.length_a 105.25 _cell.length_b 151.44 _cell.length_c 330.49 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U1Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 61 1_555 A SG CYS 306 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 706 A CYS 718 1_555 A SG CYS 761 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 54 B CYS 61 1_555 B SG CYS 306 B CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 B SG CYS 706 B CYS 718 1_555 B SG CYS 761 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 C SG CYS 54 C CYS 61 1_555 C SG CYS 306 C CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 C SG CYS 706 C CYS 718 1_555 C SG CYS 761 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf7 D SG CYS 54 D CYS 61 1_555 D SG CYS 306 D CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 D SG CYS 706 D CYS 718 1_555 D SG CYS 761 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A ND2 ASN 346 A ASN 353 1_555 E C1 NAG . A NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale2 B ND2 ASN 346 B ASN 353 1_555 H C1 NAG . B NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale3 D ND2 ASN 346 D ASN 353 1_555 L C1 NAG . D NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.506 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 327 n n C1 O1 NAG sing 328 n n C1 O5 NAG sing 329 n n C1 H1 NAG sing 330 n n C2 C3 NAG sing 331 n n C2 N2 NAG sing 332 n n C2 H2 NAG sing 333 n n C3 C4 NAG sing 334 n n C3 O3 NAG sing 335 n n C3 H3 NAG sing 336 n n C4 C5 NAG sing 337 n n C4 O4 NAG sing 338 n n C4 H4 NAG sing 339 n n C5 C6 NAG sing 340 n n C5 O5 NAG sing 341 n n C5 H5 NAG sing 342 n n C6 O6 NAG sing 343 n n C6 H61 NAG sing 344 n n C6 H62 NAG sing 345 n n C7 C8 NAG sing 346 n n C7 N2 NAG sing 347 n n C7 O7 NAG doub 348 n n C8 H81 NAG sing 349 n n C8 H82 NAG sing 350 n n C8 H83 NAG sing 351 n n N2 HN2 NAG sing 352 n n O1 HO1 NAG sing 353 n n O3 HO3 NAG sing 354 n n O4 HO4 NAG sing 355 n n O6 HO6 NAG sing 356 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4U1Y _atom_sites.fract_transf_matrix[1][1] 0.009501 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAG A 1 2001 2001 NAG NAG . F 3 FWD A 1 2002 1001 FWD FWD . G 4 FWF A 1 2003 1 FWF FWF . H 2 NAG B 1 2001 2001 NAG NAG . I 3 FWD B 1 2002 1001 FWD FWD . J 4 FWF B 1 2003 1 FWF FWF . K 3 FWD C 1 1001 1001 FWD FWD . L 2 NAG D 1 2001 2001 NAG NAG . M 3 FWD D 1 2002 1001 FWD FWD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 2 86.835 37.205 52.302 1 263.74 ? C1 NAG 2001 B 1 HETATM 2 C C2 NAG . . . H 2 86.002 38.467 52.632 1 253.47 ? C2 NAG 2001 B 1 HETATM 3 C C3 NAG . . . H 2 86.072 39.495 51.501 1 220.56 ? C3 NAG 2001 B 1 HETATM 4 C C4 NAG . . . H 2 87.499 39.692 50.986 1 214.49 ? C4 NAG 2001 B 1 HETATM 5 C C5 NAG . . . H 2 88.113 38.351 50.664 1 232.86 ? C5 NAG 2001 B 1 HETATM 6 C C6 NAG . . . H 2 89.558 38.422 50.247 1 171.89 ? C6 NAG 2001 B 1 HETATM 7 C C7 NAG . . . H 2 83.936 38.584 54.002 1 201 ? C7 NAG 2001 B 1 HETATM 8 C C8 NAG . . . H 2 84.75 39.37 54.982 1 184.23 ? C8 NAG 2001 B 1 HETATM 9 N N2 NAG . . . H 2 84.583 38.142 52.911 1 223.86 ? N2 NAG 2001 B 1 HETATM 10 O O3 NAG . . . H 2 85.544 40.762 51.858 1 253.88 ? O3 NAG 2001 B 1 HETATM 11 O O4 NAG . . . H 2 87.472 40.451 49.786 1 193.44 ? O4 NAG 2001 B 1 HETATM 12 O O5 NAG . . . H 2 88.124 37.625 51.876 1 306.67 ? O5 NAG 2001 B 1 HETATM 13 O O6 NAG . . . H 2 89.983 37.138 49.807 1 208.97 ? O6 NAG 2001 B 1 HETATM 14 O O7 NAG . . . H 2 82.722 38.342 54.209 1 220.94 ? O7 NAG 2001 B 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #