data_4U1Y
#
_model_server_result.job_id            dPnUd0w3isJpGJhDf5HOxA 
_model_server_result.datetime_utc      '2024-11-23 22:45:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4u1y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":2001}' 
#
_entry.id    4U1Y 
#
_exptl.entry_id    4U1Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4U1Y 
_cell.length_a            105.25 
_cell.length_b            151.44 
_cell.length_c            330.49 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4U1Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 54 A CYS 61 1_555 A SG CYS 306 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 706 A CYS 718 1_555 A SG CYS 761 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 B SG CYS 54 B CYS 61 1_555 B SG CYS 306 B CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 B SG CYS 706 B CYS 718 1_555 B SG CYS 761 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 C SG CYS 54 C CYS 61 1_555 C SG CYS 306 C CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 C SG CYS 706 C CYS 718 1_555 C SG CYS 761 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf7 D SG CYS 54 D CYS 61 1_555 D SG CYS 306 D CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf8 D SG CYS 706 D CYS 718 1_555 D SG CYS 761 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
covale ? covale1 A ND2 ASN 346 A ASN 353 1_555 E C1 NAG . A NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? 
covale ? covale2 B ND2 ASN 346 B ASN 353 1_555 H C1 NAG . B NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale3 D ND2 ASN 346 D ASN 353 1_555 L C1 NAG . D NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.506 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 327 n n 
C1 O1 NAG sing 328 n n 
C1 O5 NAG sing 329 n n 
C1 H1 NAG sing 330 n n 
C2 C3 NAG sing 331 n n 
C2 N2 NAG sing 332 n n 
C2 H2 NAG sing 333 n n 
C3 C4 NAG sing 334 n n 
C3 O3 NAG sing 335 n n 
C3 H3 NAG sing 336 n n 
C4 C5 NAG sing 337 n n 
C4 O4 NAG sing 338 n n 
C4 H4 NAG sing 339 n n 
C5 C6 NAG sing 340 n n 
C5 O5 NAG sing 341 n n 
C5 H5 NAG sing 342 n n 
C6 O6 NAG sing 343 n n 
C6 H61 NAG sing 344 n n 
C6 H62 NAG sing 345 n n 
C7 C8 NAG sing 346 n n 
C7 N2 NAG sing 347 n n 
C7 O7 NAG doub 348 n n 
C8 H81 NAG sing 349 n n 
C8 H82 NAG sing 350 n n 
C8 H83 NAG sing 351 n n 
N2 HN2 NAG sing 352 n n 
O1 HO1 NAG sing 353 n n 
O3 HO3 NAG sing 354 n n 
O4 HO4 NAG sing 355 n n 
O6 HO6 NAG sing 356 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4U1Y 
_atom_sites.fract_transf_matrix[1][1]    0.009501 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006603 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003026 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAG A 1 2001 2001 NAG NAG . 
F 3 FWD A 1 2002 1001 FWD FWD . 
G 4 FWF A 1 2003 1 FWF FWF . 
H 2 NAG B 1 2001 2001 NAG NAG . 
I 3 FWD B 1 2002 1001 FWD FWD . 
J 4 FWF B 1 2003 1 FWF FWF . 
K 3 FWD C 1 1001 1001 FWD FWD . 
L 2 NAG D 1 2001 2001 NAG NAG . 
M 3 FWD D 1 2002 1001 FWD FWD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . L 2 21.556 -13.253 43.299 1 223.52 ? C1 NAG 2001 D 1 
HETATM 2 C C2 NAG . . . L 2 20.927 -14.465 44.027 1 287.77 ? C2 NAG 2001 D 1 
HETATM 3 C C3 NAG . . . L 2 21.043 -15.744 43.201 1 298.09 ? C3 NAG 2001 D 1 
HETATM 4 C C4 NAG . . . L 2 20.539 -15.561 41.775 1 266.73 ? C4 NAG 2001 D 1 
HETATM 5 C C5 NAG . . . L 2 21.121 -14.314 41.115 1 264.54 ? C5 NAG 2001 D 1 
HETATM 6 C C6 NAG . . . L 2 20.377 -13.914 39.859 1 266.29 ? C6 NAG 2001 D 1 
HETATM 7 C C7 NAG . . . L 2 20.897 -15.174 46.402 1 281.57 ? C7 NAG 2001 D 1 
HETATM 8 C C8 NAG . . . L 2 21.713 -15.358 47.651 1 221.51 ? C8 NAG 2001 D 1 
HETATM 9 N N2 NAG . . . L 2 21.554 -14.668 45.338 1 257.16 ? N2 NAG 2001 D 1 
HETATM 10 O O3 NAG . . . L 2 20.219 -16.736 43.8 1 311.14 ? O3 NAG 2001 D 1 
HETATM 11 O O4 NAG . . . L 2 20.951 -16.69 41.005 1 239.1 ? O4 NAG 2001 D 1 
HETATM 12 O O5 NAG . . . L 2 21.018 -13.187 41.979 1 246.94 ? O5 NAG 2001 D 1 
HETATM 13 O O6 NAG . . . L 2 21.034 -12.84 39.191 1 194.24 ? O6 NAG 2001 D 1 
HETATM 14 O O7 NAG . . . L 2 19.702 -15.463 46.36 1 291.08 ? O7 NAG 2001 D 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#