data_4U1Y # _model_server_result.job_id zCB7E22__Pf8vPc6YiJdJA _model_server_result.datetime_utc '2024-11-23 23:04:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u1y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":2002}' # _entry.id 4U1Y # _exptl.entry_id 4U1Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 217.155 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-AMINO-3-(5-FLUORO-2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-PROPIONIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4U1Y _cell.length_a 105.25 _cell.length_b 151.44 _cell.length_c 330.49 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U1Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 K N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 61 1_555 A SG CYS 306 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 706 A CYS 718 1_555 A SG CYS 761 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 54 B CYS 61 1_555 B SG CYS 306 B CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 B SG CYS 706 B CYS 718 1_555 B SG CYS 761 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 C SG CYS 54 C CYS 61 1_555 C SG CYS 306 C CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 C SG CYS 706 C CYS 718 1_555 C SG CYS 761 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf7 D SG CYS 54 D CYS 61 1_555 D SG CYS 306 D CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 D SG CYS 706 D CYS 718 1_555 D SG CYS 761 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A ND2 ASN 346 A ASN 353 1_555 E C1 NAG . A NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale2 B ND2 ASN 346 B ASN 353 1_555 H C1 NAG . B NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale3 D ND2 ASN 346 D ASN 353 1_555 L C1 NAG . D NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.506 ? # _chem_comp.formula 'C7 H8 F N3 O4' _chem_comp.formula_weight 217.155 _chem_comp.id FWD _chem_comp.mon_nstd_flag . _chem_comp.name '2-AMINO-3-(5-FLUORO-2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-PROPIONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms FLUORO-WILLARDIINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FWD sing 83 n n N1 C6 FWD sing 84 n n N1 C7 FWD sing 85 n n C2 O2 FWD doub 86 n n C2 N3 FWD sing 87 n n N3 C4 FWD sing 88 n n N3 H3 FWD sing 89 n n C4 O4 FWD doub 90 n n C4 C5 FWD sing 91 n n C5 F5 FWD sing 92 n n C5 C6 FWD doub 93 n n C6 H6 FWD sing 94 n n C7 C8 FWD sing 95 n n C7 H71 FWD sing 96 n n C7 H72 FWD sing 97 n n C8 N8 FWD sing 98 n n C8 C9 FWD sing 99 n n C8 H8 FWD sing 100 n n N8 H81 FWD sing 101 n n N8 H82 FWD sing 102 n n C9 O91 FWD doub 103 n n C9 O92 FWD sing 104 n n O92 H92O FWD sing 105 n n # _atom_sites.entry_id 4U1Y _atom_sites.fract_transf_matrix[1][1] 0.009501 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAG A 1 2001 2001 NAG NAG . F 3 FWD A 1 2002 1001 FWD FWD . G 4 FWF A 1 2003 1 FWF FWF . H 2 NAG B 1 2001 2001 NAG NAG . I 3 FWD B 1 2002 1001 FWD FWD . J 4 FWF B 1 2003 1 FWF FWF . K 3 FWD C 1 1001 1001 FWD FWD . L 2 NAG D 1 2001 2001 NAG NAG . M 3 FWD D 1 2002 1001 FWD FWD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FWD . . . I 3 38.175 40.599 104.254 1 106.47 ? N1 FWD 2002 B 1 HETATM 2 C C2 FWD . . . I 3 37.237 40.599 105.323 1 201.96 ? C2 FWD 2002 B 1 HETATM 3 O O2 FWD . . . I 3 36.071 41.026 105.142 1 185.06 ? O2 FWD 2002 B 1 HETATM 4 N N3 FWD . . . I 3 37.581 40.141 106.554 1 216.43 ? N3 FWD 2002 B 1 HETATM 5 C C4 FWD . . . I 3 38.826 39.676 106.794 1 104.37 ? C4 FWD 2002 B 1 HETATM 6 O O4 FWD . . . I 3 39.153 39.253 107.926 1 87.23 ? O4 FWD 2002 B 1 HETATM 7 C C5 FWD . . . I 3 39.811 39.674 105.688 1 125.77 ? C5 FWD 2002 B 1 HETATM 8 F F5 FWD . . . I 3 41.057 39.214 105.896 1 211.25 ? F5 FWD 2002 B 1 HETATM 9 C C6 FWD . . . I 3 39.422 40.148 104.441 1 99.11 ? C6 FWD 2002 B 1 HETATM 10 C C7 FWD . . . I 3 37.807 41.103 102.924 1 87.33 ? C7 FWD 2002 B 1 HETATM 11 C C8 FWD . . . I 3 36.915 40.102 102.209 1 86.76 ? C8 FWD 2002 B 1 HETATM 12 N N8 FWD . . . I 3 37.642 38.869 101.982 1 134.95 ? N8 FWD 2002 B 1 HETATM 13 C C9 FWD . . . I 3 36.439 40.65 100.898 1 93.18 ? C9 FWD 2002 B 1 HETATM 14 O O91 FWD . . . I 3 36.336 39.867 99.928 1 90.48 ? O91 FWD 2002 B 1 HETATM 15 O O92 FWD . . . I 3 36.145 41.859 100.83 1 192.44 ? O92 FWD 2002 B 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 280 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 48 _model_server_stats.element_count 15 #