data_4U2Q
#
_model_server_result.job_id            mLXfs4NYGWk2QfQIGrf5tQ 
_model_server_result.datetime_utc      '2024-11-23 22:18:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4u2q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":901}' 
#
_entry.id    4U2Q 
#
_exptl.entry_id    4U2Q 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              213.23 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4U2Q 
_cell.length_a            104.94 
_cell.length_b            148.65 
_cell.length_c            337.06 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4U2Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 54 A CYS 61 1_555 A SG CYS 306 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 711 A CYS 718 1_555 A SG CYS 766 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 B SG CYS 54 B CYS 61 1_555 B SG CYS 306 B CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 B SG CYS 711 B CYS 718 1_555 B SG CYS 766 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 C SG CYS 54 C CYS 61 1_555 C SG CYS 306 C CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf6 C SG CYS 711 C CYS 718 1_555 C SG CYS 766 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf7 D SG CYS 54 D CYS 61 1_555 D SG CYS 306 D CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 D SG CYS 711 D CYS 718 1_555 D SG CYS 766 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
covale ? covale1 A ND2 ASN 346 A ASN 353 1_555 F C1 NAG . A NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale2 B ND2 ASN 346 B ASN 353 1_555 H C1 NAG . B NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? 
covale ? covale3 C ND2 ASN 346 C ASN 353 1_555 J C1 NAG . C NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? 
#
_chem_comp.formula           'C10 H15 N O4' 
_chem_comp.formula_weight    213.23 
_chem_comp.id                KAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     KAINATE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CD KAI sing 171 n n 
N CA KAI sing 172 n n 
N HN1 KAI sing 173 n n 
CD CG KAI sing 174 n n 
CD HD1 KAI sing 175 n n 
CD HD2 KAI sing 176 n n 
CD1 CG2 KAI doub 177 n n 
CD1 HD11 KAI sing 178 n n 
CD1 HD12 KAI sing 179 n n 
CD2 CG2 KAI sing 180 n n 
CD2 HD21 KAI sing 181 n n 
CD2 HD22 KAI sing 182 n n 
CD2 HD23 KAI sing 183 n n 
CA CB KAI sing 184 n n 
CA C KAI sing 185 n n 
CA HA KAI sing 186 n n 
CB CB1 KAI sing 187 n n 
CB CG KAI sing 188 n n 
CB HB KAI sing 189 n n 
CB1 CG1 KAI sing 190 n n 
CB1 HB11 KAI sing 191 n n 
CB1 HB12 KAI sing 192 n n 
CG CG2 KAI sing 193 n n 
CG HG KAI sing 194 n n 
CG1 OD1 KAI sing 195 n n 
CG1 OD2 KAI doub 196 n n 
C O KAI doub 197 n n 
C OXT KAI sing 198 n n 
OD1 HOD1 KAI sing 199 n n 
OXT HXT KAI sing 200 n n 
#
_atom_sites.entry_id                     4U2Q 
_atom_sites.fract_transf_matrix[1][1]    0.009529 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006727 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002967 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 KAI A 1 901 999 KAI KAI . 
F 3 NAG A 1 902 1001 NAG NAG . 
G 2 KAI B 1 901 999 KAI KAI . 
H 3 NAG B 1 902 1001 NAG NAG . 
I 2 KAI C 1 901 999 KAI KAI . 
J 3 NAG C 1 902 1001 NAG NAG . 
K 2 KAI D 1 901 999 KAI KAI . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N KAI . . . E 2 27.459 -9.02 277.356 1 171.42 ? N KAI 901 A 1 
HETATM 2 C CD KAI . . . E 2 26.439 -9.094 278.384 1 171.29 ? CD KAI 901 A 1 
HETATM 3 C CD1 KAI . . . E 2 25.982 -10.001 280.944 1 246.42 ? CD1 KAI 901 A 1 
HETATM 4 C CD2 KAI . . . E 2 25.39 -12.294 280.356 1 293.86 ? CD2 KAI 901 A 1 
HETATM 5 C CA KAI . . . E 2 28.017 -10.306 276.998 1 255.85 ? CA KAI 901 A 1 
HETATM 6 C CB KAI . . . E 2 27.53 -11.238 278.093 1 270.94 ? CB KAI 901 A 1 
HETATM 7 C CB1 KAI . . . E 2 28.579 -11.326 279.193 1 292.51 ? CB1 KAI 901 A 1 
HETATM 8 C CG KAI . . . E 2 26.237 -10.592 278.576 1 213.68 ? CG KAI 901 A 1 
HETATM 9 C CG1 KAI . . . E 2 29.711 -12.243 278.788 1 277.18 ? CG1 KAI 901 A 1 
HETATM 10 C CG2 KAI . . . E 2 25.882 -10.921 280.001 1 272.43 ? CG2 KAI 901 A 1 
HETATM 11 C C KAI . . . E 2 27.494 -10.764 275.672 1 275.84 ? C KAI 901 A 1 
HETATM 12 O O KAI . . . E 2 27.268 -9.906 274.793 1 312.52 ? O KAI 901 A 1 
HETATM 13 O OD1 KAI . . . E 2 30.754 -12.233 279.477 1 196.05 ? OD1 KAI 901 A 1 
HETATM 14 O OD2 KAI . . . E 2 29.566 -12.982 277.791 1 320.93 ? OD2 KAI 901 A 1 
HETATM 15 O OXT KAI . . . E 2 27.308 -11.986 275.492 1 209.31 ? OXT KAI 901 A 1 
#
_model_server_stats.io_time_ms              82 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    73 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           15 
#