data_4U39
#
_model_server_result.job_id            VfZn7WiUwPzBZs879adNsw 
_model_server_result.datetime_utc      '2024-12-30 17:07:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4u39 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CA","auth_seq_id":401}' 
#
_entry.id    4U39 
#
_exptl.entry_id    4U39 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    16 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4U39 
_cell.length_a            167.36 
_cell.length_b            167.36 
_cell.length_c            528.64 
_cell.Z_PDB               108 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4U39 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
? dimeric 2 author_defined_assembly 4 
? dimeric 2 author_defined_assembly 5 
? dimeric 2 author_defined_assembly 6 
? dimeric 2 author_defined_assembly 7 
? dimeric 2 author_defined_assembly 8 
? dimeric 2 author_defined_assembly 9 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,J,S,T 1 1 
B,K,U,V 2 1 
C,L,W,X 3 1 
D,M,Y,Z 4 1 
E,N,AA 5 1 
F,O,BA 6 1 
G,P,CA,DA 7 1 
H,Q,EA,FA 8 1 
I,R,GA,HA 9 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
? 3 CA N N 
? 3 DA N N 
? 3 EA N N 
? 3 FA N N 
? 3 GA N N 
? 3 HA N N 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 245 n n 
P O2 PO4 sing 246 n n 
P O3 PO4 sing 247 n n 
P O4 PO4 sing 248 n n 
#
_atom_sites.entry_id                     4U39 
_atom_sites.fract_transf_matrix[1][1]    0.005975 
_atom_sites.fract_transf_matrix[1][2]    0.00345 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0069 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001892 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 3 PO4 A 1 401 7 PO4 PO4 . 
T 3 PO4 A 1 402 13 PO4 PO4 . 
U 3 PO4 B 1 401 8 PO4 PO4 . 
V 3 PO4 B 1 402 20 PO4 PO4 . 
W 3 PO4 C 1 401 9 PO4 PO4 . 
X 3 PO4 C 1 402 18 PO4 PO4 . 
Y 3 PO4 D 1 401 16 PO4 PO4 . 
Z 3 PO4 D 1 402 17 PO4 PO4 . 
AA 3 PO4 E 1 401 11 PO4 PO4 . 
BA 3 PO4 F 1 401 14 PO4 PO4 . 
CA 3 PO4 G 1 401 2 PO4 PO4 . 
DA 3 PO4 G 1 402 15 PO4 PO4 . 
EA 3 PO4 H 1 401 4 PO4 PO4 . 
FA 3 PO4 H 1 402 19 PO4 PO4 . 
GA 3 PO4 I 1 401 5 PO4 PO4 . 
HA 3 PO4 I 1 402 6 PO4 PO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . CA 3 -19.255 -63.334 -89.295 1 76.75 ? P PO4 401 G 1 
HETATM 2 O O1 PO4 . . . CA 3 -19.111 -64.313 -90.446 1 84.87 ? O1 PO4 401 G 1 
HETATM 3 O O2 PO4 . . . CA 3 -20.104 -62.169 -89.751 1 82.84 ? O2 PO4 401 G 1 
HETATM 4 O O3 PO4 . . . CA 3 -17.88 -62.87 -88.852 1 78.8 ? O3 PO4 401 G 1 
HETATM 5 O O4 PO4 . . . CA 3 -19.977 -63.975 -88.145 1 77.79 ? O4 PO4 401 G 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           233 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           5 
#