data_4U3F # _model_server_result.job_id 2AMQwUUlokWG1aD2jojYQw _model_server_result.datetime_utc '2024-11-13 01:30:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u3f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":508}' # _entry.id 4U3F # _exptl.entry_id 4U3F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 16 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4U3F _cell.length_a 167.251 _cell.length_b 181.483 _cell.length_c 239.631 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U3F _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 16 CA N N ? 16 UA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C FME 1 C FME 1 1_555 C N ALA 2 C ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 D SG CYS 37 D CYS 37 1_555 FA CAB HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.746 ? covale ? covale3 D SG CYS 40 D CYS 40 1_555 FA CAC HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? covale ? covale4 I C UNK 29 I UNK 29 1_555 I N UNK 30 I UNK 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 I C UNK 30 I UNK 30 1_555 I N UNK 31 I UNK 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 I C UNK 31 I UNK 31 1_555 I N UNK 32 I UNK 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 I C UNK 32 I UNK 32 1_555 I N UNK 33 I UNK 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 I C UNK 33 I UNK 33 1_555 I N UNK 34 I UNK 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 I C UNK 34 I UNK 37 1_555 I N UNK 35 I UNK 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 I C UNK 35 I UNK 38 1_555 I N UNK 36 I UNK 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 I C UNK 36 I UNK 39 1_555 I N UNK 37 I UNK 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 I C UNK 37 I UNK 40 1_555 I N UNK 38 I UNK 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 I C UNK 38 I UNK 41 1_555 I N UNK 39 I UNK 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 I C UNK 39 I UNK 42 1_555 I N UNK 40 I UNK 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale15 I C UNK 40 I UNK 43 1_555 I N UNK 41 I UNK 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 I C UNK 41 I UNK 44 1_555 I N UNK 42 I UNK 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 N SG CYS 37 Q CYS 37 1_555 YA CAB HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.734 ? covale ? covale18 N SG CYS 40 Q CYS 40 1_555 YA CAC HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.757 ? covale ? covale19 S C UNK 31 V UNK 29 1_555 S N UNK 32 V UNK 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale20 S C UNK 32 V UNK 30 1_555 S N UNK 33 V UNK 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale21 S C UNK 33 V UNK 31 1_555 S N UNK 34 V UNK 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale22 S C UNK 34 V UNK 32 1_555 S N UNK 35 V UNK 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale23 S C UNK 35 V UNK 33 1_555 S N UNK 36 V UNK 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale24 S C UNK 36 V UNK 37 1_555 S N UNK 37 V UNK 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale25 S C UNK 37 V UNK 38 1_555 S N UNK 38 V UNK 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale26 S C UNK 38 V UNK 39 1_555 S N UNK 39 V UNK 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale27 S C UNK 39 V UNK 40 1_555 S N UNK 40 V UNK 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale28 S C UNK 40 V UNK 41 1_555 S N UNK 41 V UNK 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale29 S C UNK 41 V UNK 42 1_555 S N UNK 42 V UNK 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 V FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 W FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 V FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 W FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 FA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 FA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 IA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 IA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 IA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 IA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc11 M NE2 HIS 84 P HIS 84 1_555 OA FE HEM . P HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc12 M NE2 HIS 98 P HIS 98 1_555 PA FE HEM . P HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc13 M NE2 HIS 183 P HIS 183 1_555 OA FE HEM . P HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc14 M NE2 HIS 197 P HIS 197 1_555 PA FE HEM . P HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc15 N NE2 HIS 41 Q HIS 41 1_555 YA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc16 N SD MET 160 Q MET 160 1_555 YA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc17 O SG CYS 139 R CYS 139 1_555 BB FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc18 O ND1 HIS 141 R HIS 141 1_555 BB FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc19 O SG CYS 158 R CYS 158 1_555 BB FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc20 O ND1 HIS 161 R HIS 161 1_555 BB FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 481 n n C1 C2 GOL sing 482 n n C1 H11 GOL sing 483 n n C1 H12 GOL sing 484 n n O1 HO1 GOL sing 485 n n C2 O2 GOL sing 486 n n C2 C3 GOL sing 487 n n C2 H2 GOL sing 488 n n O2 HO2 GOL sing 489 n n C3 O3 GOL sing 490 n n C3 H31 GOL sing 491 n n C3 H32 GOL sing 492 n n O3 HO3 GOL sing 493 n n # _atom_sites.entry_id 4U3F _atom_sites.fract_transf_matrix[1][1] 0.005979 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00551 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004173 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 PEE A 1 501 8 PEE PEE . V 12 HEM C 1 501 501 HEM HEM . W 12 HEM C 1 502 502 HEM HEM . X 13 Y52 C 1 503 1 Y52 Y52 . Y 14 U10 C 1 504 2 U10 UQ . Z 11 PEE C 1 505 7 PEE PEE . AA 15 MES C 1 506 22 MES MES . BA 11 PEE C 1 507 25 PEE PEE . CA 16 GOL C 1 508 11 GOL GOL . DA 11 PEE C 1 509 12 PEE PEE . EA 11 PEE C 1 510 13 PEE PEE . FA 17 HEC D 1 501 501 HEC HEC . GA 18 CDL D 1 502 3 CDL CDL . HA 19 BOG D 1 503 9 BOG BOG . IA 20 FES E 1 501 501 FES FES . JA 11 PEE E 1 502 5 PEE PEE . KA 11 PEE E 1 503 6 PEE PEE . LA 18 CDL G 1 101 4 CDL CDL . MA 11 PEE N 1 501 8 PEE PEE . NA 11 PEE P 1 401 13 PEE PEE . OA 12 HEM P 1 402 501 HEM HEM . PA 12 HEM P 1 403 502 HEM HEM . QA 13 Y52 P 1 404 1 Y52 Y52 . RA 14 U10 P 1 405 2 U10 UQ . SA 19 BOG P 1 406 6 BOG BOG . TA 11 PEE P 1 407 7 PEE PEE . UA 16 GOL P 1 408 11 GOL GOL . VA 11 PEE P 1 409 12 PEE PEE . WA 11 PEE P 1 410 16 PEE PEE . XA 11 PEE P 1 411 25 PEE PEE . YA 17 HEC Q 1 501 501 HEC HEC . ZA 18 CDL Q 1 502 3 CDL CDL . AB 19 BOG Q 1 503 9 BOG BOG . BB 20 FES R 1 501 501 FES FES . CB 11 PEE R 1 502 5 PEE PEE . DB 18 CDL T 1 101 4 CDL CDL . EB 21 HOH A 1 601 1122 HOH HOH . EB 21 HOH A 2 602 1291 HOH HOH . FB 21 HOH B 1 501 1126 HOH HOH . GB 21 HOH C 1 601 1110 HOH HOH . GB 21 HOH C 2 602 1120 HOH HOH . HB 21 HOH F 1 201 1124 HOH HOH . IB 21 HOH N 1 601 1291 HOH HOH . JB 21 HOH O 1 501 1123 HOH HOH . JB 21 HOH O 2 502 1125 HOH HOH . KB 21 HOH P 1 501 1107 HOH HOH . KB 21 HOH P 2 502 2108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . CA 16 17.723 147.062 71.85 1 34.44 ? C1 GOL 508 C 1 HETATM 2 O O1 GOL . . . CA 16 18.513 146.515 70.816 1 35.23 ? O1 GOL 508 C 1 HETATM 3 C C2 GOL . . . CA 16 17.234 145.948 72.766 1 38.59 ? C2 GOL 508 C 1 HETATM 4 O O2 GOL . . . CA 16 17.235 146.407 74.099 1 38.63 ? O2 GOL 508 C 1 HETATM 5 C C3 GOL . . . CA 16 15.816 145.563 72.359 1 35.8 ? C3 GOL 508 C 1 HETATM 6 O O3 GOL . . . CA 16 15.628 144.176 72.544 1 43.2 ? O3 GOL 508 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #