data_4U3O # _model_server_result.job_id azWH2Iyx5_2hunLewQ2T7A _model_server_result.datetime_utc '2025-09-13 17:51:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u3o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 4U3O # _exptl.entry_id 4U3O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4U3O _cell.length_a 46.328 _cell.length_b 46.328 _cell.length_c 58.075 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U3O _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details Dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OP1 G 7 A G 7 1_555 D MN MN . A MN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc2 A OP1 G 7 A G 7 1_555 D MN MN . A MN 102 2_645 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 C MN MN . A MN 101 1_555 G O HOH . A HOH 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc4 C MN MN . A MN 101 1_555 G O HOH . A HOH 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc5 C MN MN . A MN 101 1_555 G O HOH . A HOH 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc6 C MN MN . A MN 101 1_555 G O HOH . A HOH 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc7 C MN MN . A MN 101 1_555 G O HOH . A HOH 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc8 C MN MN . A MN 101 1_555 H O HOH . B HOH 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc9 G O HOH . A HOH 216 1_555 F MN MN . B MN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc10 G O HOH . A HOH 221 1_555 E MN MN . B MN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc11 E MN MN . B MN 101 1_555 H O HOH . B HOH 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc12 E MN MN . B MN 101 1_555 H O HOH . B HOH 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc13 E MN MN . B MN 101 1_555 H O HOH . B HOH 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc14 E MN MN . B MN 101 1_555 H O HOH . B HOH 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc15 E MN MN . B MN 101 1_555 H O HOH . B HOH 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc16 F MN MN . B MN 102 1_555 H O HOH . B HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc17 F MN MN . B MN 102 1_555 H O HOH . B HOH 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc18 F MN MN . B MN 102 1_555 H O HOH . B HOH 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc19 F MN MN . B MN 102 1_555 H O HOH . B HOH 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc20 F MN MN . B MN 102 1_555 H O HOH . B HOH 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? hydrog WATSON-CRICK hydrog1 A N3 U 1 A U 1 1_555 B N1 A 8 B A 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A O4 U 1 A U 1 1_555 B N6 A 8 B A 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 C 2 A C 2 1_555 B N1 G 7 B G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N4 C 2 A C 2 1_555 B O6 G 7 B G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O2 C 2 A C 2 1_555 B N2 G 7 B G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 G 3 A G 3 1_555 B N3 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N2 G 3 A G 3 1_555 B O2 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O6 G 3 A G 3 1_555 B N4 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 U 4 A U 4 1_555 B N1 A 5 B A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O4 U 4 A U 4 1_555 B N6 A 5 B A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 A 5 A A 5 1_555 B N3 U 4 B U 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N6 A 5 A A 5 1_555 B O4 U 4 B U 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 C 6 A C 6 1_555 B N1 G 3 B G 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 C 6 A C 6 1_555 B O6 G 3 B G 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 C 6 A C 6 1_555 B N2 G 3 B G 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N1 G 7 A G 7 1_555 B N3 C 2 B C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N2 G 7 A G 7 1_555 B O2 C 2 B C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O6 G 7 A G 7 1_555 B N4 C 2 B C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 A 8 A A 8 1_555 B N3 U 1 B U 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N6 A 8 A A 8 1_555 B O4 U 1 B U 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4U3O _atom_sites.fract_transf_matrix[1][1] 0.021585 _atom_sites.fract_transf_matrix[1][2] 0.012462 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024925 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 101 1 MN MN . D 2 MN A 1 102 1 MN MN . E 2 MN B 1 101 1 MN MN . F 2 MN B 1 102 1 MN MN . G 3 HOH A 1 201 40 HOH HOH . G 3 HOH A 2 202 49 HOH HOH . G 3 HOH A 3 203 30 HOH HOH . G 3 HOH A 4 204 39 HOH HOH . G 3 HOH A 5 205 14 HOH HOH . G 3 HOH A 6 206 8 HOH HOH . G 3 HOH A 7 207 41 HOH HOH . G 3 HOH A 8 208 35 HOH HOH . G 3 HOH A 9 209 33 HOH HOH . G 3 HOH A 10 210 32 HOH HOH . G 3 HOH A 11 211 34 HOH HOH . G 3 HOH A 12 212 2 HOH HOH . G 3 HOH A 13 213 9 HOH HOH . G 3 HOH A 14 214 3 HOH HOH . G 3 HOH A 15 215 42 HOH HOH . G 3 HOH A 16 216 43 HOH HOH . G 3 HOH A 17 217 7 HOH HOH . G 3 HOH A 18 218 10 HOH HOH . G 3 HOH A 19 219 11 HOH HOH . G 3 HOH A 20 220 13 HOH HOH . G 3 HOH A 21 221 2 HOH HOH . G 3 HOH A 22 222 4 HOH HOH . G 3 HOH A 23 223 5 HOH HOH . G 3 HOH A 24 224 6 HOH HOH . G 3 HOH A 25 225 7 HOH HOH . G 3 HOH A 26 226 10 HOH HOH . G 3 HOH A 27 227 11 HOH HOH . G 3 HOH A 28 228 12 HOH HOH . G 3 HOH A 29 229 18 HOH HOH . G 3 HOH A 30 230 19 HOH HOH . G 3 HOH A 31 231 20 HOH HOH . G 3 HOH A 32 232 28 HOH HOH . G 3 HOH A 33 233 29 HOH HOH . G 3 HOH A 34 234 31 HOH HOH . G 3 HOH A 35 235 46 HOH HOH . H 3 HOH B 1 201 14 HOH HOH . H 3 HOH B 2 202 38 HOH HOH . H 3 HOH B 3 203 47 HOH HOH . H 3 HOH B 4 204 26 HOH HOH . H 3 HOH B 5 205 15 HOH HOH . H 3 HOH B 6 206 1 HOH HOH . H 3 HOH B 7 207 36 HOH HOH . H 3 HOH B 8 208 5 HOH HOH . H 3 HOH B 9 209 50 HOH HOH . H 3 HOH B 10 210 37 HOH HOH . H 3 HOH B 11 211 4 HOH HOH . H 3 HOH B 12 212 9 HOH HOH . H 3 HOH B 13 213 8 HOH HOH . H 3 HOH B 14 214 6 HOH HOH . H 3 HOH B 15 215 12 HOH HOH . H 3 HOH B 16 216 1 HOH HOH . H 3 HOH B 17 217 3 HOH HOH . H 3 HOH B 18 218 13 HOH HOH . H 3 HOH B 19 219 15 HOH HOH . H 3 HOH B 20 220 16 HOH HOH . H 3 HOH B 21 221 17 HOH HOH . H 3 HOH B 22 222 21 HOH HOH . H 3 HOH B 23 223 22 HOH HOH . H 3 HOH B 24 224 23 HOH HOH . H 3 HOH B 25 225 24 HOH HOH . H 3 HOH B 26 226 25 HOH HOH . H 3 HOH B 27 227 27 HOH HOH . H 3 HOH B 28 228 44 HOH HOH . H 3 HOH B 29 229 45 HOH HOH . H 3 HOH B 30 230 48 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 56.967 _atom_site.Cartn_y 3.377 _atom_site.Cartn_z 17.642 _atom_site.occupancy 0.63 _atom_site.B_iso_or_equiv 13.98 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #