data_4U40
#
_model_server_result.job_id            edtz9sK1tKdzbtC4xSmFdw 
_model_server_result.datetime_utc      '2024-11-14 14:31:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4u40 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":404}' 
#
_entry.id    4U40 
#
_exptl.entry_id    4U40 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4U40 
_cell.length_a            80.339 
_cell.length_b            87.595 
_cell.length_c            91.45 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4U40 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1 
A,C,D,E,F,G 2 1 
B,H 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O SER 78 A SER 77 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc2 A O HIS 80 A HIS 79 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? 
metalc ? metalc3 A O ILE 83 A ILE 82 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc4 A OG1 THR 85 A THR 84 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc5 A O GLN 158 A GLN 157 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? 
metalc ? metalc6 A OD1 ASN 159 A ASN 158 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc7 A OD2 ASP 172 A ASP 171 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc8 C O1G ANP . A ANP 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc9 C O1B ANP . A ANP 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc10 C O1A ANP . A ANP 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc11 E MG MG . A MG 403 1_555 G O HOH . A HOH 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc12 E MG MG . A MG 403 1_555 G O HOH . A HOH 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4U40 
_atom_sites.fract_transf_matrix[1][1]    0.012447 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011416 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010935 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ANP A 1 401 1 ANP DRG . 
D 3 MG A 1 402 1 MG MG . 
E 3 MG A 1 403 1 MG MG . 
F 3 MG A 1 404 1 MG MG . 
G 4 HOH A 1 501 84 HOH HOH . 
G 4 HOH A 2 502 130 HOH HOH . 
G 4 HOH A 3 503 148 HOH HOH . 
G 4 HOH A 4 504 67 HOH HOH . 
G 4 HOH A 5 505 34 HOH HOH . 
G 4 HOH A 6 506 80 HOH HOH . 
G 4 HOH A 7 507 37 HOH HOH . 
G 4 HOH A 8 508 32 HOH HOH . 
G 4 HOH A 9 509 40 HOH HOH . 
G 4 HOH A 10 510 144 HOH HOH . 
G 4 HOH A 11 511 1 HOH HOH . 
G 4 HOH A 12 512 96 HOH HOH . 
G 4 HOH A 13 513 87 HOH HOH . 
G 4 HOH A 14 514 23 HOH HOH . 
G 4 HOH A 15 515 122 HOH HOH . 
G 4 HOH A 16 516 172 HOH HOH . 
G 4 HOH A 17 517 4 HOH HOH . 
G 4 HOH A 18 518 5 HOH HOH . 
G 4 HOH A 19 519 6 HOH HOH . 
G 4 HOH A 20 520 7 HOH HOH . 
G 4 HOH A 21 521 10 HOH HOH . 
G 4 HOH A 22 522 12 HOH HOH . 
G 4 HOH A 23 523 13 HOH HOH . 
G 4 HOH A 24 524 14 HOH HOH . 
G 4 HOH A 25 525 18 HOH HOH . 
G 4 HOH A 26 526 25 HOH HOH . 
G 4 HOH A 27 527 26 HOH HOH . 
G 4 HOH A 28 528 28 HOH HOH . 
G 4 HOH A 29 529 30 HOH HOH . 
G 4 HOH A 30 530 31 HOH HOH . 
G 4 HOH A 31 531 33 HOH HOH . 
G 4 HOH A 32 532 36 HOH HOH . 
G 4 HOH A 33 533 41 HOH HOH . 
G 4 HOH A 34 534 45 HOH HOH . 
G 4 HOH A 35 535 49 HOH HOH . 
G 4 HOH A 36 536 50 HOH HOH . 
G 4 HOH A 37 537 55 HOH HOH . 
G 4 HOH A 38 538 60 HOH HOH . 
G 4 HOH A 39 539 63 HOH HOH . 
G 4 HOH A 40 540 64 HOH HOH . 
G 4 HOH A 41 541 65 HOH HOH . 
G 4 HOH A 42 542 72 HOH HOH . 
G 4 HOH A 43 543 73 HOH HOH . 
G 4 HOH A 44 544 75 HOH HOH . 
G 4 HOH A 45 545 77 HOH HOH . 
G 4 HOH A 46 546 79 HOH HOH . 
G 4 HOH A 47 547 83 HOH HOH . 
G 4 HOH A 48 548 86 HOH HOH . 
G 4 HOH A 49 549 90 HOH HOH . 
G 4 HOH A 50 550 92 HOH HOH . 
G 4 HOH A 51 551 93 HOH HOH . 
G 4 HOH A 52 552 94 HOH HOH . 
G 4 HOH A 53 553 97 HOH HOH . 
G 4 HOH A 54 554 98 HOH HOH . 
G 4 HOH A 55 555 99 HOH HOH . 
G 4 HOH A 56 556 100 HOH HOH . 
G 4 HOH A 57 557 101 HOH HOH . 
G 4 HOH A 58 558 103 HOH HOH . 
G 4 HOH A 59 559 106 HOH HOH . 
G 4 HOH A 60 560 109 HOH HOH . 
G 4 HOH A 61 561 111 HOH HOH . 
G 4 HOH A 62 562 112 HOH HOH . 
G 4 HOH A 63 563 118 HOH HOH . 
G 4 HOH A 64 564 126 HOH HOH . 
G 4 HOH A 65 565 132 HOH HOH . 
G 4 HOH A 66 566 133 HOH HOH . 
G 4 HOH A 67 567 141 HOH HOH . 
G 4 HOH A 68 568 142 HOH HOH . 
G 4 HOH A 69 569 147 HOH HOH . 
G 4 HOH A 70 570 150 HOH HOH . 
G 4 HOH A 71 571 151 HOH HOH . 
G 4 HOH A 72 572 152 HOH HOH . 
G 4 HOH A 73 573 156 HOH HOH . 
G 4 HOH A 74 574 157 HOH HOH . 
G 4 HOH A 75 575 159 HOH HOH . 
G 4 HOH A 76 576 161 HOH HOH . 
G 4 HOH A 77 577 166 HOH HOH . 
G 4 HOH A 78 578 170 HOH HOH . 
G 4 HOH A 79 579 171 HOH HOH . 
G 4 HOH A 80 580 173 HOH HOH . 
G 4 HOH A 81 581 174 HOH HOH . 
G 4 HOH A 82 582 175 HOH HOH . 
H 4 HOH B 1 401 66 HOH HOH . 
H 4 HOH B 2 402 56 HOH HOH . 
H 4 HOH B 3 403 104 HOH HOH . 
H 4 HOH B 4 404 125 HOH HOH . 
H 4 HOH B 5 405 81 HOH HOH . 
H 4 HOH B 6 406 117 HOH HOH . 
H 4 HOH B 7 407 143 HOH HOH . 
H 4 HOH B 8 408 91 HOH HOH . 
H 4 HOH B 9 409 22 HOH HOH . 
H 4 HOH B 10 410 102 HOH HOH . 
H 4 HOH B 11 411 129 HOH HOH . 
H 4 HOH B 12 412 110 HOH HOH . 
H 4 HOH B 13 413 145 HOH HOH . 
H 4 HOH B 14 414 127 HOH HOH . 
H 4 HOH B 15 415 2 HOH HOH . 
H 4 HOH B 16 416 3 HOH HOH . 
H 4 HOH B 17 417 8 HOH HOH . 
H 4 HOH B 18 418 9 HOH HOH . 
H 4 HOH B 19 419 11 HOH HOH . 
H 4 HOH B 20 420 15 HOH HOH . 
H 4 HOH B 21 421 17 HOH HOH . 
H 4 HOH B 22 422 19 HOH HOH . 
H 4 HOH B 23 423 20 HOH HOH . 
H 4 HOH B 24 424 21 HOH HOH . 
H 4 HOH B 25 425 24 HOH HOH . 
H 4 HOH B 26 426 29 HOH HOH . 
H 4 HOH B 27 427 35 HOH HOH . 
H 4 HOH B 28 428 38 HOH HOH . 
H 4 HOH B 29 429 39 HOH HOH . 
H 4 HOH B 30 430 42 HOH HOH . 
H 4 HOH B 31 431 43 HOH HOH . 
H 4 HOH B 32 432 44 HOH HOH . 
H 4 HOH B 33 433 46 HOH HOH . 
H 4 HOH B 34 434 47 HOH HOH . 
H 4 HOH B 35 435 48 HOH HOH . 
H 4 HOH B 36 436 51 HOH HOH . 
H 4 HOH B 37 437 52 HOH HOH . 
H 4 HOH B 38 438 53 HOH HOH . 
H 4 HOH B 39 439 58 HOH HOH . 
H 4 HOH B 40 440 59 HOH HOH . 
H 4 HOH B 41 441 61 HOH HOH . 
H 4 HOH B 42 442 62 HOH HOH . 
H 4 HOH B 43 443 68 HOH HOH . 
H 4 HOH B 44 444 69 HOH HOH . 
H 4 HOH B 45 445 70 HOH HOH . 
H 4 HOH B 46 446 71 HOH HOH . 
H 4 HOH B 47 447 74 HOH HOH . 
H 4 HOH B 48 448 76 HOH HOH . 
H 4 HOH B 49 449 78 HOH HOH . 
H 4 HOH B 50 450 85 HOH HOH . 
H 4 HOH B 51 451 88 HOH HOH . 
H 4 HOH B 52 452 89 HOH HOH . 
H 4 HOH B 53 453 95 HOH HOH . 
H 4 HOH B 54 454 105 HOH HOH . 
H 4 HOH B 55 455 107 HOH HOH . 
H 4 HOH B 56 456 116 HOH HOH . 
H 4 HOH B 57 457 120 HOH HOH . 
H 4 HOH B 58 458 123 HOH HOH . 
H 4 HOH B 59 459 131 HOH HOH . 
H 4 HOH B 60 460 134 HOH HOH . 
H 4 HOH B 61 461 135 HOH HOH . 
H 4 HOH B 62 462 136 HOH HOH . 
H 4 HOH B 63 463 137 HOH HOH . 
H 4 HOH B 64 464 138 HOH HOH . 
H 4 HOH B 65 465 139 HOH HOH . 
H 4 HOH B 66 466 140 HOH HOH . 
H 4 HOH B 67 467 146 HOH HOH . 
H 4 HOH B 68 468 149 HOH HOH . 
H 4 HOH B 69 469 154 HOH HOH . 
H 4 HOH B 70 470 158 HOH HOH . 
H 4 HOH B 71 471 160 HOH HOH . 
H 4 HOH B 72 472 165 HOH HOH . 
H 4 HOH B 73 473 168 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -15.866 
_atom_site.Cartn_y               -37.264 
_atom_site.Cartn_z               -24.535 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        51.93 
_atom_site.pdbx_formal_charge    2 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           404 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#