data_4U42 # _model_server_result.job_id 8NNflUuBOqLB_dV68tacMQ _model_server_result.datetime_utc '2024-11-21 21:55:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u42 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 4U42 # _exptl.entry_id 4U42 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 309.369 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[(3S)-3-(4-methyl-1H-pyrazol-3-yl)piperidin-1-yl]pyrido[3,2-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4U42 _cell.length_a 79.448 _cell.length_b 83.672 _cell.length_c 95.459 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U42 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,C,D,E,H 2 1 B,F,G,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 78 A SER 77 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc2 A O ILE 83 A ILE 82 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc3 A OG1 THR 85 A THR 84 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc4 B O SER 78 B SER 77 1_555 G MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc5 B O HIS 80 B HIS 79 1_555 G MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc6 B O ILE 83 B ILE 82 1_555 G MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc7 B OG1 THR 85 B THR 84 1_555 G MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? # _chem_comp.formula 'C16 H19 N7' _chem_comp.formula_weight 309.369 _chem_comp.id 3C8 _chem_comp.mon_nstd_flag . _chem_comp.name 6-[(3S)-3-(4-methyl-1H-pyrazol-3-yl)piperidin-1-yl]pyrido[3,2-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C11 3C8 sing 1 n n C10 C9 3C8 sing 2 n n C11 N12 3C8 sing 3 n n C15 C16 3C8 doub 4 n y C15 C14 3C8 sing 5 n y C16 C17 3C8 sing 6 n y N12 C14 3C8 sing 7 n n N12 C13 3C8 sing 8 n n C9 C8 3C8 sing 9 n n C14 N19 3C8 doub 10 n y C17 N23 3C8 doub 11 n y C17 C18 3C8 sing 12 n y C8 C13 3C8 sing 13 n n C8 C7 3C8 sing 14 n n N23 C22 3C8 sing 15 n y N19 C18 3C8 sing 16 n y C18 C20 3C8 doub 17 n y C7 N6 3C8 doub 18 n y C7 C2 3C8 sing 19 n y N6 N4 3C8 sing 20 n y C22 N21 3C8 doub 21 n y C20 N21 3C8 sing 22 n y C20 N24 3C8 sing 23 n n C2 C1 3C8 sing 24 n n C2 C3 3C8 doub 25 n y N4 C3 3C8 sing 26 n y C11 H1 3C8 sing 27 n n C11 H2 3C8 sing 28 n n C8 H3 3C8 sing 29 n n C9 H4 3C8 sing 30 n n C9 H6 3C8 sing 31 n n C10 H7 3C8 sing 32 n n C10 H8 3C8 sing 33 n n C13 H9 3C8 sing 34 n n C13 H10 3C8 sing 35 n n C3 H11 3C8 sing 36 n n C1 H12 3C8 sing 37 n n C1 H13 3C8 sing 38 n n C1 H14 3C8 sing 39 n n N4 H5 3C8 sing 40 n n C15 H15 3C8 sing 41 n n C16 H16 3C8 sing 42 n n C22 H17 3C8 sing 43 n n N24 H18 3C8 sing 44 n n N24 H19 3C8 sing 45 n n # _atom_sites.entry_id 4U42 _atom_sites.fract_transf_matrix[1][1] 0.012587 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011951 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010476 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MES A 1 401 1 MES MES . D 3 3C8 A 1 402 1 3C8 DRG . E 4 MG A 1 403 1 MG MG . F 3 3C8 B 1 401 1 3C8 DRG . G 4 MG B 1 402 1 MG MG . H 5 HOH A 1 501 4 HOH HOH . H 5 HOH A 2 502 39 HOH HOH . H 5 HOH A 3 503 28 HOH HOH . H 5 HOH A 4 504 41 HOH HOH . H 5 HOH A 5 505 1 HOH HOH . H 5 HOH A 6 506 6 HOH HOH . H 5 HOH A 7 507 8 HOH HOH . H 5 HOH A 8 508 10 HOH HOH . H 5 HOH A 9 509 12 HOH HOH . H 5 HOH A 10 510 14 HOH HOH . H 5 HOH A 11 511 15 HOH HOH . H 5 HOH A 12 512 17 HOH HOH . H 5 HOH A 13 513 19 HOH HOH . H 5 HOH A 14 514 21 HOH HOH . H 5 HOH A 15 515 22 HOH HOH . H 5 HOH A 16 516 24 HOH HOH . H 5 HOH A 17 517 29 HOH HOH . H 5 HOH A 18 518 32 HOH HOH . H 5 HOH A 19 519 34 HOH HOH . H 5 HOH A 20 520 36 HOH HOH . H 5 HOH A 21 521 37 HOH HOH . H 5 HOH A 22 522 40 HOH HOH . H 5 HOH A 23 523 42 HOH HOH . H 5 HOH A 24 524 46 HOH HOH . H 5 HOH A 25 525 52 HOH HOH . I 5 HOH B 1 501 16 HOH HOH . I 5 HOH B 2 502 27 HOH HOH . I 5 HOH B 3 503 48 HOH HOH . I 5 HOH B 4 504 44 HOH HOH . I 5 HOH B 5 505 26 HOH HOH . I 5 HOH B 6 506 47 HOH HOH . I 5 HOH B 7 507 49 HOH HOH . I 5 HOH B 8 508 9 HOH HOH . I 5 HOH B 9 509 3 HOH HOH . I 5 HOH B 10 510 5 HOH HOH . I 5 HOH B 11 511 7 HOH HOH . I 5 HOH B 12 512 11 HOH HOH . I 5 HOH B 13 513 18 HOH HOH . I 5 HOH B 14 514 20 HOH HOH . I 5 HOH B 15 515 23 HOH HOH . I 5 HOH B 16 516 30 HOH HOH . I 5 HOH B 17 517 31 HOH HOH . I 5 HOH B 18 518 33 HOH HOH . I 5 HOH B 19 519 35 HOH HOH . I 5 HOH B 20 520 38 HOH HOH . I 5 HOH B 21 521 45 HOH HOH . I 5 HOH B 22 522 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 3C8 . . . F 3 -37.88 -5.526 -16.841 1 67.91 ? C14 3C8 401 B 1 HETATM 2 C C11 3C8 . . . F 3 -36.056 -4.169 -16.199 1 70.36 ? C11 3C8 401 B 1 HETATM 3 C C7 3C8 . . . F 3 -34.466 -7.593 -14.114 1 71.39 ? C7 3C8 401 B 1 HETATM 4 C C8 3C8 . . . F 3 -35.098 -6.269 -14.464 1 71.19 ? C8 3C8 401 B 1 HETATM 5 C C9 3C8 . . . F 3 -34.12 -5.427 -15.272 1 69.32 ? C9 3C8 401 B 1 HETATM 6 C C10 3C8 . . . F 3 -34.783 -4.058 -15.346 1 68.57 ? C10 3C8 401 B 1 HETATM 7 C C13 3C8 . . . F 3 -36.419 -6.473 -15.222 1 63.94 ? C13 3C8 401 B 1 HETATM 8 C C3 3C8 . . . F 3 -33.761 -9.698 -14.194 1 76.62 ? C3 3C8 401 B 1 HETATM 9 C C1 3C8 . . . F 3 -34.888 -8.914 -16.323 1 76.44 ? C1 3C8 401 B 1 HETATM 10 C C2 3C8 . . . F 3 -34.382 -8.74 -14.914 1 72.89 ? C2 3C8 401 B 1 HETATM 11 N N4 3C8 . . . F 3 -33.465 -9.179 -12.986 1 77.7 ? N4 3C8 401 B 1 HETATM 12 N N6 3C8 . . . F 3 -33.919 -7.859 -12.958 1 71.14 ? N6 3C8 401 B 1 HETATM 13 N N12 3C8 . . . F 3 -36.998 -5.238 -15.792 1 66.68 ? N12 3C8 401 B 1 HETATM 14 C C15 3C8 . . . F 3 -37.929 -4.664 -17.953 1 65.46 ? C15 3C8 401 B 1 HETATM 15 C C16 3C8 . . . F 3 -38.778 -4.923 -18.995 1 67.02 ? C16 3C8 401 B 1 HETATM 16 C C17 3C8 . . . F 3 -39.612 -6.062 -18.913 1 68.67 ? C17 3C8 401 B 1 HETATM 17 C C18 3C8 . . . F 3 -39.524 -6.894 -17.764 1 71.7 ? C18 3C8 401 B 1 HETATM 18 N N19 3C8 . . . F 3 -38.659 -6.597 -16.779 1 69.03 ? N19 3C8 401 B 1 HETATM 19 C C20 3C8 . . . F 3 -40.383 -8.033 -17.713 1 69.12 ? C20 3C8 401 B 1 HETATM 20 N N21 3C8 . . . F 3 -41.221 -8.25 -18.726 1 66.62 ? N21 3C8 401 B 1 HETATM 21 C C22 3C8 . . . F 3 -41.262 -7.445 -19.777 1 64.99 ? C22 3C8 401 B 1 HETATM 22 N N23 3C8 . . . F 3 -40.485 -6.389 -19.884 1 64.69 ? N23 3C8 401 B 1 HETATM 23 N N24 3C8 . . . F 3 -40.363 -8.878 -16.623 1 65.42 ? N24 3C8 401 B 1 HETATM 24 H H5 3C8 . . . F 3 -33.008 -9.639 -12.264 1 92.91 ? H5 3C8 401 B 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #