data_4U4M
#
_model_server_result.job_id            1kkIzizp09MR7dcmFwdMjQ 
_model_server_result.datetime_utc      '2024-12-22 11:16:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4u4m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":408}' 
#
_entry.id    4U4M 
#
_exptl.entry_id    4U4M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4U4M 
_cell.length_a            141.4 
_cell.length_b            155.64 
_cell.length_c            55.92 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4U4M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
? 4 Z N N 
? 4 AA N N 
? 4 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 163 A LYS 174 1_555 H CA PYR . A PYR 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.262 ? 
covale ? covale2 B NZ LYS 163 B LYS 174 1_555 Q CA PYR . B PYR 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.269 ? 
covale ? covale3 C NZ LYS 163 C LYS 174 1_555 V CA PYR . C PYR 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.276 ? 
covale ? covale4 D NZ LYS 163 D LYS 174 1_555 Y CA PYR . D PYR 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.27 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     4U4M 
_atom_sites.fract_transf_matrix[1][1]    0.007072 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006425 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017883 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 URE A 1 401 2 URE URE . 
F 2 URE A 1 402 7 URE URE . 
G 2 URE A 1 403 13 URE URE . 
H 3 PYR A 1 404 2 PYR PYR . 
I 4 EDO A 1 405 4 EDO EDO . 
J 4 EDO A 1 406 5 EDO EDO . 
K 4 EDO A 1 407 6 EDO EDO . 
L 4 EDO A 1 408 8 EDO EDO . 
M 2 URE B 1 401 3 URE URE . 
N 2 URE B 1 402 4 URE URE . 
O 2 URE B 1 403 5 URE URE . 
P 2 URE B 1 404 8 URE URE . 
Q 3 PYR B 1 405 3 PYR PYR . 
R 4 EDO B 1 406 1 EDO EDO . 
S 4 EDO B 1 407 9 EDO EDO . 
T 4 EDO B 1 408 12 EDO EDO . 
U 2 URE C 1 401 14 URE URE . 
V 3 PYR C 1 402 4 PYR PYR . 
W 2 URE D 1 401 1 URE URE . 
X 2 URE D 1 402 6 URE URE . 
Y 3 PYR D 1 403 1 PYR PYR . 
Z 4 EDO D 1 404 3 EDO EDO . 
AA 4 EDO D 1 405 10 EDO EDO . 
BA 4 EDO D 1 406 13 EDO EDO . 
CA 5 HOH A 1 501 5 HOH HOH . 
DA 5 HOH D 1 501 4 HOH HOH . 
DA 5 HOH D 2 502 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . T 4 143.42 9.569 24.186 1 22.37 ? C1 EDO 408 B 1 
HETATM 2 O O1 EDO . . . T 4 142.11 10.033 23.777 1 21.02 ? O1 EDO 408 B 1 
HETATM 3 C C2 EDO . . . T 4 144.226 8.905 23.051 1 22.79 ? C2 EDO 408 B 1 
HETATM 4 O O2 EDO . . . T 4 145.597 8.607 23.425 1 23.05 ? O2 EDO 408 B 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           4 
#