data_4U5D
#
_model_server_result.job_id            PZiX0bhY0JMJVBKz3qauGQ 
_model_server_result.datetime_utc      '2024-11-23 11:20:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4u5d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":901}' 
#
_entry.id    4U5D 
#
_exptl.entry_id    4U5D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              213.23 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4U5D 
_cell.length_a            161.51 
_cell.length_b            367.58 
_cell.length_c            109.38 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4U5D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 J N N 
? 3 M N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 54 A CYS 59 1_555 A SG CYS 306 A CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 708 A CYS 718 1_555 A SG CYS 763 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 B SG CYS 54 B CYS 59 1_555 B SG CYS 306 B CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 B SG CYS 708 B CYS 718 1_555 B SG CYS 763 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 C SG CYS 54 C CYS 59 1_555 C SG CYS 306 C CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 C SG CYS 708 C CYS 718 1_555 C SG CYS 763 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 D SG CYS 54 D CYS 59 1_555 D SG CYS 306 D CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf8 D SG CYS 708 D CYS 718 1_555 D SG CYS 763 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf9 E SG CYS 10 E CYS 6 1_555 F SG CYS 10 F CYS 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf10 E SG CYS 11 E CYS 7 1_555 F SG CYS 11 F CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf11 E SG CYS 16 E CYS 12 1_555 E SG CYS 47 E CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf12 E SG CYS 17 E CYS 13 1_555 E SG CYS 56 E CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf13 E SG CYS 24 E CYS 20 1_555 E SG CYS 39 E CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf14 E SG CYS 57 E CYS 53 1_555 E SG CYS 85 E CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf15 E SG CYS 63 E CYS 59 1_555 E SG CYS 80 E CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf16 E SG CYS 89 E CYS 85 1_555 F SG CYS 89 F CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf17 F SG CYS 16 F CYS 12 1_555 F SG CYS 47 F CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf18 F SG CYS 17 F CYS 13 1_555 F SG CYS 56 F CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf19 F SG CYS 24 F CYS 20 1_555 F SG CYS 39 F CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf20 F SG CYS 57 F CYS 53 1_555 F SG CYS 85 F CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf21 F SG CYS 63 F CYS 59 1_555 F SG CYS 80 F CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 346 A ASN 351 1_555 H C1 NAG . A NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale2 B ND2 ASN 346 B ASN 351 1_555 K C1 NAG . B NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale3 C ND2 ASN 346 C ASN 351 1_555 N C1 NAG . C NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale4 D ND2 ASN 346 D ASN 351 1_555 P C1 NAG . D NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? 
#
_chem_comp.formula           'C10 H15 N O4' 
_chem_comp.formula_weight    213.23 
_chem_comp.id                KAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     KAINATE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CD KAI sing 240 n n 
N CA KAI sing 241 n n 
N HN1 KAI sing 242 n n 
CD CG KAI sing 243 n n 
CD HD1 KAI sing 244 n n 
CD HD2 KAI sing 245 n n 
CD1 CG2 KAI doub 246 n n 
CD1 HD11 KAI sing 247 n n 
CD1 HD12 KAI sing 248 n n 
CD2 CG2 KAI sing 249 n n 
CD2 HD21 KAI sing 250 n n 
CD2 HD22 KAI sing 251 n n 
CD2 HD23 KAI sing 252 n n 
CA CB KAI sing 253 n n 
CA C KAI sing 254 n n 
CA HA KAI sing 255 n n 
CB CB1 KAI sing 256 n n 
CB CG KAI sing 257 n n 
CB HB KAI sing 258 n n 
CB1 CG1 KAI sing 259 n n 
CB1 HB11 KAI sing 260 n n 
CB1 HB12 KAI sing 261 n n 
CG CG2 KAI sing 262 n n 
CG HG KAI sing 263 n n 
CG1 OD1 KAI sing 264 n n 
CG1 OD2 KAI doub 265 n n 
C O KAI doub 266 n n 
C OXT KAI sing 267 n n 
OD1 HOD1 KAI sing 268 n n 
OXT HXT KAI sing 269 n n 
#
_atom_sites.entry_id                     4U5D 
_atom_sites.fract_transf_matrix[1][1]    0.006192 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00272 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009142 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 KAI A 1 901 999 KAI KAI . 
H 4 NAG A 1 902 1399 NAG NAG . 
I 5 FWF A 1 903 1 FWF FWF . 
J 3 KAI B 1 901 999 KAI KAI . 
K 4 NAG B 1 902 1399 NAG NAG . 
L 5 FWF B 1 903 1 FWF FWF . 
M 3 KAI C 1 901 999 KAI KAI . 
N 4 NAG C 1 902 1399 NAG NAG . 
O 3 KAI D 1 901 999 KAI KAI . 
P 4 NAG D 1 902 1399 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N KAI . . . J 3 -10.857 -28.573 32.011 1 121.38 ? N KAI 901 B 1 
HETATM 2 C CD KAI . . . J 3 -10.459 -28.57 30.617 1 108.84 ? CD KAI 901 B 1 
HETATM 3 C CD1 KAI . . . J 3 -9.167 -29.984 28.652 1 96.42 ? CD1 KAI 901 B 1 
HETATM 4 C CD2 KAI . . . J 3 -6.882 -29.383 29.274 1 144.61 ? CD2 KAI 901 B 1 
HETATM 5 C CA KAI . . . J 3 -9.757 -28.802 32.923 1 146.97 ? CA KAI 901 B 1 
HETATM 6 C CB KAI . . . J 3 -8.633 -29.3 32.032 1 171.05 ? CB KAI 901 B 1 
HETATM 7 C CB1 KAI . . . J 3 -8.656 -30.824 31.95 1 173.48 ? CB1 KAI 901 B 1 
HETATM 8 C CG KAI . . . J 3 -8.939 -28.642 30.691 1 134.04 ? CG KAI 901 B 1 
HETATM 9 C CG1 KAI . . . J 3 -7.992 -31.475 33.147 1 147.77 ? CG1 KAI 901 B 1 
HETATM 10 C CG2 KAI . . . J 3 -8.367 -29.37 29.506 1 121.51 ? CG2 KAI 901 B 1 
HETATM 11 C C KAI . . . J 3 -9.349 -27.52 33.578 1 131.19 ? C KAI 901 B 1 
HETATM 12 O O KAI . . . J 3 -10.074 -26.516 33.41 1 108.15 ? O KAI 901 B 1 
HETATM 13 O OD1 KAI . . . J 3 -7.582 -30.758 34.084 1 122.6 ? OD1 KAI 901 B 1 
HETATM 14 O OD2 KAI . . . J 3 -7.875 -32.72 33.159 1 150.46 ? OD2 KAI 901 B 1 
HETATM 15 O OXT KAI . . . J 3 -8.303 -27.499 34.262 1 159.9 ? OXT KAI 901 B 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           223 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#