data_4U5D # _model_server_result.job_id jeuAFxrMRVXNVOFQ_NCM0w _model_server_result.datetime_utc '2024-11-27 02:16:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u5d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":903}' # _entry.id 4U5D # _exptl.entry_id 4U5D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 480.684 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N,N'-[biphenyl-4,4'-diyldi(2R)propane-2,1-diyl]dipropane-2-sulfonamide" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4U5D _cell.length_a 161.51 _cell.length_b 367.58 _cell.length_c 109.38 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U5D _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 59 1_555 A SG CYS 306 A CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 708 A CYS 718 1_555 A SG CYS 763 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 B SG CYS 54 B CYS 59 1_555 B SG CYS 306 B CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 B SG CYS 708 B CYS 718 1_555 B SG CYS 763 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 C SG CYS 54 C CYS 59 1_555 C SG CYS 306 C CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 C SG CYS 708 C CYS 718 1_555 C SG CYS 763 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 D SG CYS 54 D CYS 59 1_555 D SG CYS 306 D CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 D SG CYS 708 D CYS 718 1_555 D SG CYS 763 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 E SG CYS 10 E CYS 6 1_555 F SG CYS 10 F CYS 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 E SG CYS 11 E CYS 7 1_555 F SG CYS 11 F CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 E SG CYS 16 E CYS 12 1_555 E SG CYS 47 E CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 E SG CYS 17 E CYS 13 1_555 E SG CYS 56 E CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 E SG CYS 24 E CYS 20 1_555 E SG CYS 39 E CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf14 E SG CYS 57 E CYS 53 1_555 E SG CYS 85 E CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 E SG CYS 63 E CYS 59 1_555 E SG CYS 80 E CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf16 E SG CYS 89 E CYS 85 1_555 F SG CYS 89 F CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf17 F SG CYS 16 F CYS 12 1_555 F SG CYS 47 F CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf18 F SG CYS 17 F CYS 13 1_555 F SG CYS 56 F CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf19 F SG CYS 24 F CYS 20 1_555 F SG CYS 39 F CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf20 F SG CYS 57 F CYS 53 1_555 F SG CYS 85 F CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf21 F SG CYS 63 F CYS 59 1_555 F SG CYS 80 F CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 346 A ASN 351 1_555 H C1 NAG . A NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale2 B ND2 ASN 346 B ASN 351 1_555 K C1 NAG . B NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale3 C ND2 ASN 346 C ASN 351 1_555 N C1 NAG . C NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 D ND2 ASN 346 D ASN 351 1_555 P C1 NAG . D NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? # _chem_comp.formula 'C24 H36 N2 O4 S2' _chem_comp.formula_weight 480.684 _chem_comp.id FWF _chem_comp.mon_nstd_flag . _chem_comp.name "N,N'-[biphenyl-4,4'-diyldi(2R)propane-2,1-diyl]dipropane-2-sulfonamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C13 FWF sing 83 n n C16 C14 FWF sing 84 n n C11 C12 FWF doub 85 n y C11 C10 FWF sing 86 n y C5 C6 FWF doub 87 n y C5 C4 FWF sing 88 n y C12 C7 FWF sing 89 n y C6 C1 FWF sing 90 n y C10 C4 FWF sing 91 n n C10 C9 FWF doub 92 n y C4 C3 FWF doub 93 n y C7 C13 FWF sing 94 n n C7 C8 FWF doub 95 n y C1 C14 FWF sing 96 n n C1 C2 FWF doub 97 n y C13 C18 FWF sing 98 n n C9 C8 FWF sing 99 n y C3 C2 FWF sing 100 n y C14 C15 FWF sing 101 n n C18 N2 FWF sing 102 n n C15 N1 FWF sing 103 n n N2 S1 FWF sing 104 n n O1 S1 FWF doub 105 n n N1 S2 FWF sing 106 n n O4 S2 FWF doub 107 n n S1 C19 FWF sing 108 n n S1 O2 FWF doub 109 n n S2 C20 FWF sing 110 n n S2 O3 FWF doub 111 n n C20 C23 FWF sing 112 n n C20 C24 FWF sing 113 n n C19 C21 FWF sing 114 n n C19 C22 FWF sing 115 n n C20 H1 FWF sing 116 n n N1 H2 FWF sing 117 n n C15 H3 FWF sing 118 n n C15 H4 FWF sing 119 n n C14 H5 FWF sing 120 n n C16 H6 FWF sing 121 n n C16 H7 FWF sing 122 n n C16 H8 FWF sing 123 n n C6 H9 FWF sing 124 n n C5 H10 FWF sing 125 n n C3 H11 FWF sing 126 n n C2 H12 FWF sing 127 n n C9 H13 FWF sing 128 n n C8 H14 FWF sing 129 n n C11 H15 FWF sing 130 n n C12 H16 FWF sing 131 n n C13 H17 FWF sing 132 n n C17 H18 FWF sing 133 n n C17 H19 FWF sing 134 n n C17 H20 FWF sing 135 n n C18 H21 FWF sing 136 n n C18 H22 FWF sing 137 n n N2 H23 FWF sing 138 n n C19 H24 FWF sing 139 n n C21 H25 FWF sing 140 n n C21 H26 FWF sing 141 n n C21 H27 FWF sing 142 n n C22 H28 FWF sing 143 n n C22 H29 FWF sing 144 n n C22 H30 FWF sing 145 n n C23 H31 FWF sing 146 n n C23 H32 FWF sing 147 n n C23 H33 FWF sing 148 n n C24 H34 FWF sing 149 n n C24 H35 FWF sing 150 n n C24 H36 FWF sing 151 n n # _atom_sites.entry_id 4U5D _atom_sites.fract_transf_matrix[1][1] 0.006192 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00272 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009142 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 KAI A 1 901 999 KAI KAI . H 4 NAG A 1 902 1399 NAG NAG . I 5 FWF A 1 903 1 FWF FWF . J 3 KAI B 1 901 999 KAI KAI . K 4 NAG B 1 902 1399 NAG NAG . L 5 FWF B 1 903 1 FWF FWF . M 3 KAI C 1 901 999 KAI KAI . N 4 NAG C 1 902 1399 NAG NAG . O 3 KAI D 1 901 999 KAI KAI . P 4 NAG D 1 902 1399 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 FWF . . . I 5 -65.802 -26.743 1.632 1 94.25 ? O3 FWF 903 A 1 HETATM 2 S S2 FWF . . . I 5 -66.407 -28.021 1.379 1 108.49 ? S2 FWF 903 A 1 HETATM 3 O O4 FWF . . . I 5 -66.838 -28.614 2.616 1 93.16 ? O4 FWF 903 A 1 HETATM 4 C C20 FWF . . . I 5 -67.724 -27.783 0.392 1 103.9 ? C20 FWF 903 A 1 HETATM 5 N N1 FWF . . . I 5 -65.334 -28.974 0.66 1 124.95 ? N1 FWF 903 A 1 HETATM 6 C C15 FWF . . . I 5 -65.426 -30.425 0.715 1 154.06 ? C15 FWF 903 A 1 HETATM 7 C C14 FWF . . . I 5 -64.036 -31.03 0.917 1 112 ? C14 FWF 903 A 1 HETATM 8 C C16 FWF . . . I 5 -64.066 -32.553 0.921 1 121 ? C16 FWF 903 A 1 HETATM 9 C C1 FWF . . . I 5 -63.482 -30.542 2.198 1 113.09 ? C1 FWF 903 A 1 HETATM 10 C C6 FWF . . . I 5 -64.203 -30.686 3.38 1 97.81 ? C6 FWF 903 A 1 HETATM 11 C C5 FWF . . . I 5 -63.679 -30.219 4.581 1 96.15 ? C5 FWF 903 A 1 HETATM 12 C C4 FWF . . . I 5 -62.427 -29.616 4.588 1 107.78 ? C4 FWF 903 A 1 HETATM 13 C C3 FWF . . . I 5 -61.712 -29.466 3.406 1 115.42 ? C3 FWF 903 A 1 HETATM 14 C C2 FWF . . . I 5 -62.236 -29.93 2.208 1 106.7 ? C2 FWF 903 A 1 HETATM 15 C C10 FWF . . . I 5 -61.828 -29.084 5.836 1 99.73 ? C10 FWF 903 A 1 HETATM 16 C C9 FWF . . . I 5 -62.642 -28.539 6.82 1 105.65 ? C9 FWF 903 A 1 HETATM 17 C C8 FWF . . . I 5 -62.08 -28.014 7.977 1 111.56 ? C8 FWF 903 A 1 HETATM 18 C C11 FWF . . . I 5 -60.45 -29.081 5.989 1 107.25 ? C11 FWF 903 A 1 HETATM 19 C C12 FWF . . . I 5 -59.89 -28.562 7.147 1 130.71 ? C12 FWF 903 A 1 HETATM 20 C C7 FWF . . . I 5 -60.701 -28.028 8.14 1 130.78 ? C7 FWF 903 A 1 HETATM 21 C C13 FWF . . . I 5 -60.09 -27.458 9.361 1 153.04 ? C13 FWF 903 A 1 HETATM 22 C C17 FWF . . . I 5 -59.496 -28.562 10.231 1 117.01 ? C17 FWF 903 A 1 HETATM 23 C C18 FWF . . . I 5 -59.039 -26.43 8.927 1 151.63 ? C18 FWF 903 A 1 HETATM 24 N N2 FWF . . . I 5 -59.612 -25.445 8.016 1 125.26 ? N2 FWF 903 A 1 HETATM 25 S S1 FWF . . . I 5 -58.93 -25.065 6.607 1 109.41 ? S1 FWF 903 A 1 HETATM 26 O O1 FWF . . . I 5 -58.475 -26.242 5.924 1 118.89 ? O1 FWF 903 A 1 HETATM 27 O O2 FWF . . . I 5 -59.887 -24.39 5.775 1 102.96 ? O2 FWF 903 A 1 HETATM 28 C C19 FWF . . . I 5 -57.633 -24.047 6.822 1 100.07 ? C19 FWF 903 A 1 HETATM 29 C C21 FWF . . . I 5 -56.804 -24.022 5.545 1 109.59 ? C21 FWF 903 A 1 HETATM 30 C C22 FWF . . . I 5 -58.144 -22.652 7.151 1 128.68 ? C22 FWF 903 A 1 HETATM 31 C C23 FWF . . . I 5 -68.878 -27.231 1.219 1 162.54 ? C23 FWF 903 A 1 HETATM 32 C C24 FWF . . . I 5 -67.353 -26.817 -0.727 1 100.79 ? C24 FWF 903 A 1 # _model_server_stats.io_time_ms 93 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #