data_4U5F # _model_server_result.job_id SrjPQlXuCieHS00B005MKw _model_server_result.datetime_utc '2024-11-09 01:51:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u5f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":901}' # _entry.id 4U5F # _exptl.entry_id 4U5F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 213.23 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4U5F _cell.length_a 160.29 _cell.length_b 365.42 _cell.length_c 108.86 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U5F _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 J N N ? 3 L N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 59 1_555 A SG CYS 306 A CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 708 A CYS 718 1_555 A SG CYS 763 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 B SG CYS 54 B CYS 59 1_555 B SG CYS 306 B CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 B SG CYS 708 B CYS 718 1_555 B SG CYS 763 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 C SG CYS 54 C CYS 59 1_555 C SG CYS 306 C CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 C SG CYS 708 C CYS 718 1_555 C SG CYS 763 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 D SG CYS 54 D CYS 59 1_555 D SG CYS 306 D CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 D SG CYS 708 D CYS 718 1_555 D SG CYS 763 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 E SG CYS 10 E CYS 6 1_555 F SG CYS 10 F CYS 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 E SG CYS 11 E CYS 7 1_555 F SG CYS 11 F CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 E SG CYS 16 E CYS 12 1_555 E SG CYS 47 E CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 E SG CYS 17 E CYS 13 1_555 E SG CYS 56 E CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf13 E SG CYS 24 E CYS 20 1_555 E SG CYS 39 E CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf14 E SG CYS 57 E CYS 53 1_555 E SG CYS 85 E CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf15 E SG CYS 63 E CYS 59 1_555 E SG CYS 80 E CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 E SG CYS 89 E CYS 85 1_555 F SG CYS 89 F CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf17 F SG CYS 16 F CYS 12 1_555 F SG CYS 47 F CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf18 F SG CYS 17 F CYS 13 1_555 F SG CYS 56 F CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf19 F SG CYS 24 F CYS 20 1_555 F SG CYS 39 F CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf20 F SG CYS 57 F CYS 53 1_555 F SG CYS 85 F CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf21 F SG CYS 63 F CYS 59 1_555 F SG CYS 80 F CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 346 A ASN 351 1_555 H C1 NAG . A NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? covale ? covale2 B ND2 ASN 346 B ASN 351 1_555 K C1 NAG . B NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 C ND2 ASN 346 C ASN 351 1_555 M C1 NAG . C NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale4 D ND2 ASN 346 D ASN 351 1_555 P C1 NAG . D NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? # _chem_comp.formula 'C10 H15 N O4' _chem_comp.formula_weight 213.23 _chem_comp.id KAI _chem_comp.mon_nstd_flag . _chem_comp.name 3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms KAINATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CD KAI sing 240 n n N CA KAI sing 241 n n N HN1 KAI sing 242 n n CD CG KAI sing 243 n n CD HD1 KAI sing 244 n n CD HD2 KAI sing 245 n n CD1 CG2 KAI doub 246 n n CD1 HD11 KAI sing 247 n n CD1 HD12 KAI sing 248 n n CD2 CG2 KAI sing 249 n n CD2 HD21 KAI sing 250 n n CD2 HD22 KAI sing 251 n n CD2 HD23 KAI sing 252 n n CA CB KAI sing 253 n n CA C KAI sing 254 n n CA HA KAI sing 255 n n CB CB1 KAI sing 256 n n CB CG KAI sing 257 n n CB HB KAI sing 258 n n CB1 CG1 KAI sing 259 n n CB1 HB11 KAI sing 260 n n CB1 HB12 KAI sing 261 n n CG CG2 KAI sing 262 n n CG HG KAI sing 263 n n CG1 OD1 KAI sing 264 n n CG1 OD2 KAI doub 265 n n C O KAI doub 266 n n C OXT KAI sing 267 n n OD1 HOD1 KAI sing 268 n n OXT HXT KAI sing 269 n n # _atom_sites.entry_id 4U5F _atom_sites.fract_transf_matrix[1][1] 0.006239 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002737 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 KAI A 1 901 999 KAI KAI . H 4 NAG A 1 902 1399 NAG NAG . I 5 FWF B 1 901 1 FWF FWF . J 3 KAI B 1 902 999 KAI KAI . K 4 NAG B 1 903 1399 NAG NAG . L 3 KAI C 1 901 999 KAI KAI . M 4 NAG C 1 902 1399 NAG NAG . N 5 FWF D 1 901 1 FWF FWF . O 3 KAI D 1 902 999 KAI KAI . P 4 NAG D 1 903 1399 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N KAI . . . L 3 -35.721 -24.58 47.667 1 114.85 ? N KAI 901 C 1 HETATM 2 C CD KAI . . . L 3 -36.207 -24.972 48.975 1 112.95 ? CD KAI 901 C 1 HETATM 3 C CD1 KAI . . . L 3 -38.179 -26.286 50.394 1 151.26 ? CD1 KAI 901 C 1 HETATM 4 C CD2 KAI . . . L 3 -39.936 -24.606 50.142 1 108.86 ? CD2 KAI 901 C 1 HETATM 5 C CA KAI . . . L 3 -36.718 -23.9 46.871 1 142.35 ? CA KAI 901 C 1 HETATM 6 C CB KAI . . . L 3 -38.019 -24.242 47.567 1 155.95 ? CB KAI 901 C 1 HETATM 7 C CB1 KAI . . . L 3 -38.565 -25.571 47.06 1 168.77 ? CB1 KAI 901 C 1 HETATM 8 C CG KAI . . . L 3 -37.595 -24.34 49.023 1 133.1 ? CG KAI 901 C 1 HETATM 9 C CG1 KAI . . . L 3 -38.862 -25.538 45.579 1 171.12 ? CG1 KAI 901 C 1 HETATM 10 C CG2 KAI . . . L 3 -38.553 -25.132 49.87 1 144.33 ? CG2 KAI 901 C 1 HETATM 11 C C KAI . . . L 3 -36.504 -22.421 46.939 1 129.43 ? C KAI 901 C 1 HETATM 12 O O KAI . . . L 3 -37.483 -21.667 46.743 1 123.33 ? O KAI 901 C 1 HETATM 13 O OD1 KAI . . . L 3 -39.4 -24.522 45.085 1 171.24 ? OD1 KAI 901 C 1 HETATM 14 O OD2 KAI . . . L 3 -38.567 -26.545 44.9 1 178.11 ? OD2 KAI 901 C 1 HETATM 15 O OXT KAI . . . L 3 -35.356 -21.998 47.196 1 127.05 ? OXT KAI 901 C 1 # _model_server_stats.io_time_ms 177 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #