data_4U6C # _model_server_result.job_id hwuuZ0uafKXL9AHkYbIg8g _model_server_result.datetime_utc '2024-11-22 08:54:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u6c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 4U6C # _exptl.entry_id 4U6C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 207.207 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1R)-1-amino-3-cyclopentylpropyl]phosphonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.38 _cell.angle_gamma 90 _cell.entry_id 4U6C _cell.length_a 47.076 _cell.length_b 77.299 _cell.length_c 47.42 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U6C _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 5 A GLY 94 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.318 ? metalc ? metalc2 A O LEU 7 A LEU 96 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc3 A OE2 GLU 119 A GLU 208 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc4 A OD1 ASP 140 A ASP 229 1_555 C CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc5 A OD2 ASP 140 A ASP 229 1_555 C CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc6 A OD2 ASP 151 A ASP 240 1_555 B CO CO . A CO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc7 A OD1 ASP 151 A ASP 240 1_555 C CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? metalc ? metalc8 A NE2 HIS 214 A HIS 303 1_555 B CO CO . A CO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc9 A OE1 GLU 247 A GLU 336 1_555 B CO CO . A CO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc10 A OE2 GLU 278 A GLU 367 1_555 B CO CO . A CO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc11 A OE1 GLU 278 A GLU 367 1_555 C CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc12 B CO CO . A CO 400 1_555 F O Q06 . A Q06 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc13 B CO CO . A CO 400 1_555 F O2 Q06 . A Q06 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc14 C CO CO . A CO 401 1_555 F O Q06 . A Q06 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc15 C CO CO . A CO 401 1_555 F N Q06 . A Q06 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc16 D K K . A K 402 1_555 G O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? # _chem_comp.formula 'C8 H18 N O3 P' _chem_comp.formula_weight 207.207 _chem_comp.id Q06 _chem_comp.mon_nstd_flag . _chem_comp.name '[(1R)-1-amino-3-cyclopentylpropyl]phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 P Q06 sing 290 n n P O Q06 doub 291 n n P O1 Q06 sing 292 n n P C Q06 sing 293 n n C N Q06 sing 294 n n C C1 Q06 sing 295 n n C1 C2 Q06 sing 296 n n C2 C3 Q06 sing 297 n n C3 C7 Q06 sing 298 n n C3 C4 Q06 sing 299 n n C7 C6 Q06 sing 300 n n C6 C5 Q06 sing 301 n n C5 C4 Q06 sing 302 n n O2 H1 Q06 sing 303 n n O1 H3 Q06 sing 304 n n C H4 Q06 sing 305 n n N H5 Q06 sing 306 n n N H6 Q06 sing 307 n n C1 H8 Q06 sing 308 n n C2 H9 Q06 sing 309 n n C2 H10 Q06 sing 310 n n C3 H11 Q06 sing 311 n n C7 H12 Q06 sing 312 n n C7 H13 Q06 sing 313 n n C6 H14 Q06 sing 314 n n C6 H15 Q06 sing 315 n n C5 H16 Q06 sing 316 n n C5 H17 Q06 sing 317 n n C4 H18 Q06 sing 318 n n C4 H19 Q06 sing 319 n n C1 H2 Q06 sing 320 n n # _atom_sites.entry_id 4U6C _atom_sites.fract_transf_matrix[1][1] 0.021242 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000513 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012937 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021094 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 400 400 CO CO . C 2 CO A 1 401 401 CO CO . D 3 K A 1 402 402 K K . E 4 GOL A 1 403 403 GOL GOL . F 5 Q06 A 1 404 404 Q06 Q06 . G 6 HOH A 1 501 501 HOH HOH . G 6 HOH A 2 502 502 HOH HOH . G 6 HOH A 3 503 503 HOH HOH . G 6 HOH A 4 504 504 HOH HOH . G 6 HOH A 5 505 505 HOH HOH . G 6 HOH A 6 506 506 HOH HOH . G 6 HOH A 7 507 507 HOH HOH . G 6 HOH A 8 508 508 HOH HOH . G 6 HOH A 9 509 509 HOH HOH . G 6 HOH A 10 510 510 HOH HOH . G 6 HOH A 11 511 511 HOH HOH . G 6 HOH A 12 512 512 HOH HOH . G 6 HOH A 13 513 513 HOH HOH . G 6 HOH A 14 514 514 HOH HOH . G 6 HOH A 15 515 515 HOH HOH . G 6 HOH A 16 516 516 HOH HOH . G 6 HOH A 17 517 517 HOH HOH . G 6 HOH A 18 518 518 HOH HOH . G 6 HOH A 19 519 519 HOH HOH . G 6 HOH A 20 520 520 HOH HOH . G 6 HOH A 21 521 521 HOH HOH . G 6 HOH A 22 522 522 HOH HOH . G 6 HOH A 23 523 523 HOH HOH . G 6 HOH A 24 524 525 HOH HOH . G 6 HOH A 25 525 526 HOH HOH . G 6 HOH A 26 526 527 HOH HOH . G 6 HOH A 27 527 528 HOH HOH . G 6 HOH A 28 528 529 HOH HOH . G 6 HOH A 29 529 530 HOH HOH . G 6 HOH A 30 530 531 HOH HOH . G 6 HOH A 31 531 524 HOH HOH . G 6 HOH A 32 532 532 HOH HOH . G 6 HOH A 33 533 533 HOH HOH . G 6 HOH A 34 534 534 HOH HOH . G 6 HOH A 35 535 535 HOH HOH . G 6 HOH A 36 536 536 HOH HOH . G 6 HOH A 37 537 537 HOH HOH . G 6 HOH A 38 538 538 HOH HOH . G 6 HOH A 39 539 539 HOH HOH . G 6 HOH A 40 540 540 HOH HOH . G 6 HOH A 41 541 541 HOH HOH . G 6 HOH A 42 542 542 HOH HOH . G 6 HOH A 43 543 543 HOH HOH . G 6 HOH A 44 544 544 HOH HOH . G 6 HOH A 45 545 545 HOH HOH . G 6 HOH A 46 546 546 HOH HOH . G 6 HOH A 47 547 547 HOH HOH . G 6 HOH A 48 548 548 HOH HOH . G 6 HOH A 49 549 549 HOH HOH . G 6 HOH A 50 550 550 HOH HOH . G 6 HOH A 51 551 551 HOH HOH . G 6 HOH A 52 552 552 HOH HOH . G 6 HOH A 53 553 553 HOH HOH . G 6 HOH A 54 554 554 HOH HOH . G 6 HOH A 55 555 555 HOH HOH . G 6 HOH A 56 556 556 HOH HOH . G 6 HOH A 57 557 557 HOH HOH . G 6 HOH A 58 558 558 HOH HOH . G 6 HOH A 59 559 559 HOH HOH . G 6 HOH A 60 560 560 HOH HOH . G 6 HOH A 61 561 561 HOH HOH . G 6 HOH A 62 562 562 HOH HOH . G 6 HOH A 63 563 563 HOH HOH . G 6 HOH A 64 564 564 HOH HOH . G 6 HOH A 65 565 565 HOH HOH . G 6 HOH A 66 566 566 HOH HOH . G 6 HOH A 67 567 567 HOH HOH . G 6 HOH A 68 568 568 HOH HOH . G 6 HOH A 69 569 569 HOH HOH . G 6 HOH A 70 570 570 HOH HOH . G 6 HOH A 71 571 571 HOH HOH . G 6 HOH A 72 572 572 HOH HOH . G 6 HOH A 73 573 573 HOH HOH . G 6 HOH A 74 574 574 HOH HOH . G 6 HOH A 75 575 575 HOH HOH . G 6 HOH A 76 576 576 HOH HOH . G 6 HOH A 77 577 577 HOH HOH . G 6 HOH A 78 578 578 HOH HOH . G 6 HOH A 79 579 579 HOH HOH . G 6 HOH A 80 580 580 HOH HOH . G 6 HOH A 81 581 581 HOH HOH . G 6 HOH A 82 582 582 HOH HOH . G 6 HOH A 83 583 583 HOH HOH . G 6 HOH A 84 584 584 HOH HOH . G 6 HOH A 85 585 585 HOH HOH . G 6 HOH A 86 586 586 HOH HOH . G 6 HOH A 87 587 587 HOH HOH . G 6 HOH A 88 588 588 HOH HOH . G 6 HOH A 89 589 589 HOH HOH . G 6 HOH A 90 590 590 HOH HOH . G 6 HOH A 91 591 591 HOH HOH . G 6 HOH A 92 592 592 HOH HOH . G 6 HOH A 93 593 593 HOH HOH . G 6 HOH A 94 594 594 HOH HOH . G 6 HOH A 95 595 595 HOH HOH . G 6 HOH A 96 596 596 HOH HOH . G 6 HOH A 97 597 597 HOH HOH . G 6 HOH A 98 598 598 HOH HOH . G 6 HOH A 99 599 599 HOH HOH . G 6 HOH A 100 600 600 HOH HOH . G 6 HOH A 101 601 601 HOH HOH . G 6 HOH A 102 602 602 HOH HOH . G 6 HOH A 103 603 603 HOH HOH . G 6 HOH A 104 604 604 HOH HOH . G 6 HOH A 105 605 605 HOH HOH . G 6 HOH A 106 606 606 HOH HOH . G 6 HOH A 107 607 607 HOH HOH . G 6 HOH A 108 608 608 HOH HOH . G 6 HOH A 109 609 609 HOH HOH . G 6 HOH A 110 610 610 HOH HOH . G 6 HOH A 111 611 611 HOH HOH . G 6 HOH A 112 612 612 HOH HOH . G 6 HOH A 113 613 613 HOH HOH . G 6 HOH A 114 614 614 HOH HOH . G 6 HOH A 115 615 615 HOH HOH . G 6 HOH A 116 616 616 HOH HOH . G 6 HOH A 117 617 617 HOH HOH . G 6 HOH A 118 618 618 HOH HOH . G 6 HOH A 119 619 619 HOH HOH . G 6 HOH A 120 620 620 HOH HOH . G 6 HOH A 121 621 621 HOH HOH . G 6 HOH A 122 622 622 HOH HOH . G 6 HOH A 123 623 623 HOH HOH . G 6 HOH A 124 624 624 HOH HOH . G 6 HOH A 125 625 625 HOH HOH . G 6 HOH A 126 626 626 HOH HOH . G 6 HOH A 127 627 627 HOH HOH . G 6 HOH A 128 628 628 HOH HOH . G 6 HOH A 129 629 629 HOH HOH . G 6 HOH A 130 630 630 HOH HOH . G 6 HOH A 131 631 631 HOH HOH . G 6 HOH A 132 632 632 HOH HOH . G 6 HOH A 133 633 633 HOH HOH . G 6 HOH A 134 634 634 HOH HOH . G 6 HOH A 135 635 635 HOH HOH . G 6 HOH A 136 636 636 HOH HOH . G 6 HOH A 137 637 637 HOH HOH . G 6 HOH A 138 638 638 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 Q06 . . . F 5 22.14 -2.23 12.416 1 24.54 ? O2 Q06 404 A 1 HETATM 2 P P Q06 . . . F 5 21.425 -2.461 11.031 1 24.54 ? P Q06 404 A 1 HETATM 3 O O Q06 . . . F 5 21.272 -1.207 10.349 1 25.6 ? O Q06 404 A 1 HETATM 4 O O1 Q06 . . . F 5 20.003 -3.049 11.197 1 25.63 ? O1 Q06 404 A 1 HETATM 5 C C Q06 . . . F 5 22.287 -3.593 9.937 1 29.62 ? C Q06 404 A 1 HETATM 6 N N Q06 . . . F 5 23.613 -3.145 9.508 1 23.92 ? N Q06 404 A 1 HETATM 7 C C1 Q06 . . . F 5 22.115 -4.589 11.021 1 32.89 ? C1 Q06 404 A 1 HETATM 8 C C2 Q06 . . . F 5 23.341 -5.249 11.348 1 38.39 ? C2 Q06 404 A 1 HETATM 9 C C3 Q06 . . . F 5 23.374 -6.438 10.497 1 30.97 ? C3 Q06 404 A 1 HETATM 10 C C7 Q06 . . . F 5 22.058 -7.12 10.153 1 31.01 ? C7 Q06 404 A 1 HETATM 11 C C6 Q06 . . . F 5 22.469 -8.552 9.886 1 35.15 ? C6 Q06 404 A 1 HETATM 12 C C5 Q06 . . . F 5 23.725 -8.755 10.715 1 32.24 ? C5 Q06 404 A 1 HETATM 13 C C4 Q06 . . . F 5 24.05 -7.446 11.39 1 35 ? C4 Q06 404 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #