data_4U6I # _model_server_result.job_id 0D3N83jTvtSxaiir4OZNgw _model_server_result.datetime_utc '2024-12-26 16:50:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u6i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 4U6I # _exptl.entry_id 4U6I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4U6I _cell.length_a 88.23 _cell.length_b 88.23 _cell.length_c 252.01 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U6I _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 74 A ASN 74 1_555 D NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc2 D NA NA . A NA 301 1_555 B OD1 ASN 74 B ASN 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc3 D NA NA . A NA 301 1_555 C OD1 ASN 74 C ASN 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc4 C NE2 HIS 32 C HIS 32 1_555 E CO B12 . C B12 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4U6I _atom_sites.fract_transf_matrix[1][1] 0.011334 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003968 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NA A 1 301 1 NA NA . E 3 B12 C 1 301 1 B12 B12 . F 4 HOH A 1 401 105 HOH HOH . F 4 HOH A 2 402 88 HOH HOH . F 4 HOH A 3 403 3 HOH HOH . F 4 HOH A 4 404 9 HOH HOH . F 4 HOH A 5 405 17 HOH HOH . F 4 HOH A 6 406 19 HOH HOH . F 4 HOH A 7 407 23 HOH HOH . F 4 HOH A 8 408 27 HOH HOH . F 4 HOH A 9 409 29 HOH HOH . F 4 HOH A 10 410 32 HOH HOH . F 4 HOH A 11 411 35 HOH HOH . F 4 HOH A 12 412 45 HOH HOH . F 4 HOH A 13 413 52 HOH HOH . F 4 HOH A 14 414 54 HOH HOH . F 4 HOH A 15 415 56 HOH HOH . F 4 HOH A 16 416 57 HOH HOH . F 4 HOH A 17 417 59 HOH HOH . F 4 HOH A 18 418 61 HOH HOH . F 4 HOH A 19 419 62 HOH HOH . F 4 HOH A 20 420 65 HOH HOH . F 4 HOH A 21 421 68 HOH HOH . F 4 HOH A 22 422 70 HOH HOH . F 4 HOH A 23 423 73 HOH HOH . F 4 HOH A 24 424 77 HOH HOH . F 4 HOH A 25 425 84 HOH HOH . F 4 HOH A 26 426 93 HOH HOH . F 4 HOH A 27 427 95 HOH HOH . F 4 HOH A 28 428 99 HOH HOH . F 4 HOH A 29 429 104 HOH HOH . F 4 HOH A 30 430 123 HOH HOH . F 4 HOH A 31 431 130 HOH HOH . F 4 HOH A 32 432 132 HOH HOH . F 4 HOH A 33 433 176 HOH HOH . G 4 HOH B 1 301 71 HOH HOH . G 4 HOH B 2 302 12 HOH HOH . G 4 HOH B 3 303 103 HOH HOH . G 4 HOH B 4 304 139 HOH HOH . G 4 HOH B 5 305 108 HOH HOH . G 4 HOH B 6 306 2 HOH HOH . G 4 HOH B 7 307 6 HOH HOH . G 4 HOH B 8 308 11 HOH HOH . G 4 HOH B 9 309 14 HOH HOH . G 4 HOH B 10 310 15 HOH HOH . G 4 HOH B 11 311 16 HOH HOH . G 4 HOH B 12 312 20 HOH HOH . G 4 HOH B 13 313 21 HOH HOH . G 4 HOH B 14 314 24 HOH HOH . G 4 HOH B 15 315 26 HOH HOH . G 4 HOH B 16 316 33 HOH HOH . G 4 HOH B 17 317 34 HOH HOH . G 4 HOH B 18 318 36 HOH HOH . G 4 HOH B 19 319 37 HOH HOH . G 4 HOH B 20 320 38 HOH HOH . G 4 HOH B 21 321 43 HOH HOH . G 4 HOH B 22 322 46 HOH HOH . G 4 HOH B 23 323 48 HOH HOH . G 4 HOH B 24 324 50 HOH HOH . G 4 HOH B 25 325 58 HOH HOH . G 4 HOH B 26 326 64 HOH HOH . G 4 HOH B 27 327 82 HOH HOH . G 4 HOH B 28 328 90 HOH HOH . G 4 HOH B 29 329 115 HOH HOH . G 4 HOH B 30 330 120 HOH HOH . G 4 HOH B 31 331 125 HOH HOH . G 4 HOH B 32 332 127 HOH HOH . G 4 HOH B 33 333 133 HOH HOH . G 4 HOH B 34 334 158 HOH HOH . H 4 HOH C 1 401 42 HOH HOH . H 4 HOH C 2 402 76 HOH HOH . H 4 HOH C 3 403 66 HOH HOH . H 4 HOH C 4 404 107 HOH HOH . H 4 HOH C 5 405 1 HOH HOH . H 4 HOH C 6 406 4 HOH HOH . H 4 HOH C 7 407 5 HOH HOH . H 4 HOH C 8 408 7 HOH HOH . H 4 HOH C 9 409 8 HOH HOH . H 4 HOH C 10 410 10 HOH HOH . H 4 HOH C 11 411 25 HOH HOH . H 4 HOH C 12 412 28 HOH HOH . H 4 HOH C 13 413 30 HOH HOH . H 4 HOH C 14 414 31 HOH HOH . H 4 HOH C 15 415 39 HOH HOH . H 4 HOH C 16 416 40 HOH HOH . H 4 HOH C 17 417 47 HOH HOH . H 4 HOH C 18 418 49 HOH HOH . H 4 HOH C 19 419 51 HOH HOH . H 4 HOH C 20 420 53 HOH HOH . H 4 HOH C 21 421 55 HOH HOH . H 4 HOH C 22 422 60 HOH HOH . H 4 HOH C 23 423 63 HOH HOH . H 4 HOH C 24 424 67 HOH HOH . H 4 HOH C 25 425 69 HOH HOH . H 4 HOH C 26 426 80 HOH HOH . H 4 HOH C 27 427 86 HOH HOH . H 4 HOH C 28 428 89 HOH HOH . H 4 HOH C 29 429 106 HOH HOH . H 4 HOH C 30 430 114 HOH HOH . H 4 HOH C 31 431 117 HOH HOH . H 4 HOH C 32 432 119 HOH HOH . H 4 HOH C 33 433 121 HOH HOH . H 4 HOH C 34 434 146 HOH HOH . H 4 HOH C 35 435 161 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -37.139 _atom_site.Cartn_y -10.608 _atom_site.Cartn_z -14.941 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #