data_4U6L # _model_server_result.job_id '_Z3B5tIlUMdkz33s6usO9g' _model_server_result.datetime_utc '2024-11-12 20:52:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u6l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 4U6L # _exptl.entry_id 4U6L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 161.116 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT HEXAMMINE(III)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4U6L _cell.length_a 48.52 _cell.length_b 48.52 _cell.length_c 46.52 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' 5CM 1 B 5CM 1 1_555 B P DT 2 B DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale2 B O3' DT 8 B DT 8 1_555 B P 5CM 9 B 5CM 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? metalc ? metalc1 D SR SR . A SR 102 1_555 F O HOH . A HOH 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc2 D SR SR . A SR 102 1_555 F O HOH . A HOH 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc3 D SR SR . A SR 102 1_555 F O HOH . A HOH 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc4 D SR SR . A SR 102 1_555 F O HOH . A HOH 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? hydrog WATSON-CRICK hydrog1 A N1 G 1 A G 1 1_555 B N3 5CM 9 B 5CM 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 G 1 A G 1 1_555 B O2 5CM 9 B 5CM 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 G 1 A G 1 1_555 B N4 5CM 9 B 5CM 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 A 2 A A 2 1_555 B N3 DT 8 B DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 A 2 A A 2 1_555 B O4 DT 8 B DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 A 3 A A 3 1_555 B N3 DT 7 B DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N6 A 3 A A 3 1_555 B O4 DT 7 B DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N1 G 4 A G 4 1_555 B N3 DC 6 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N2 G 4 A G 4 1_555 B O2 DC 6 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O6 G 4 A G 4 1_555 B N4 DC 6 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 A 5 A A 5 1_555 B N3 DT 5 B DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N6 A 5 A A 5 1_555 B O4 DT 5 B DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 A 6 A A 6 1_555 B N3 DT 4 B DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 A 6 A A 6 1_555 B O4 DT 4 B DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 G 7 A G 7 1_555 B N3 DC 3 B DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N2 G 7 A G 7 1_555 B O2 DC 3 B DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O6 G 7 A G 7 1_555 B N4 DC 3 B DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 A 8 A A 8 1_555 B N3 DT 2 B DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N6 A 8 A A 8 1_555 B O4 DT 2 B DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 G 9 A G 9 1_555 B N3 5CM 1 B 5CM 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N2 G 9 A G 9 1_555 B O2 5CM 1 B 5CM 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O6 G 9 A G 9 1_555 B N4 5CM 1 B 5CM 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Co H18 N6 3' _chem_comp.formula_weight 161.116 _chem_comp.id NCO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT HEXAMMINE(III)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CO N1 NCO sing 192 n n CO N2 NCO sing 193 n n CO N3 NCO sing 194 n n CO N4 NCO sing 195 n n CO N5 NCO sing 196 n n CO N6 NCO sing 197 n n N1 HN11 NCO sing 198 n n N1 HN12 NCO sing 199 n n N1 HN13 NCO sing 200 n n N2 HN21 NCO sing 201 n n N2 HN22 NCO sing 202 n n N2 HN23 NCO sing 203 n n N3 HN31 NCO sing 204 n n N3 HN32 NCO sing 205 n n N3 HN33 NCO sing 206 n n N4 HN41 NCO sing 207 n n N4 HN42 NCO sing 208 n n N4 HN43 NCO sing 209 n n N5 HN51 NCO sing 210 n n N5 HN52 NCO sing 211 n n N5 HN53 NCO sing 212 n n N6 HN61 NCO sing 213 n n N6 HN62 NCO sing 214 n n N6 HN63 NCO sing 215 n n # _atom_sites.entry_id 4U6L _atom_sites.fract_transf_matrix[1][1] 0.02061 _atom_sites.fract_transf_matrix[1][2] 0.011899 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021496 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NCO A 1 101 51 NCO NCO . D 4 SR A 1 102 61 SR SR2 . E 4 SR B 1 101 62 SR SR2 . F 5 HOH A 1 201 119 HOH HOH . F 5 HOH A 2 202 131 HOH HOH . F 5 HOH A 3 203 158 HOH HOH . F 5 HOH A 4 204 122 HOH HOH . F 5 HOH A 5 205 118 HOH HOH . F 5 HOH A 6 206 137 HOH HOH . F 5 HOH A 7 207 156 HOH HOH . F 5 HOH A 8 208 141 HOH HOH . F 5 HOH A 9 209 157 HOH HOH . F 5 HOH A 10 210 160 HOH HOH . F 5 HOH A 11 211 127 HOH HOH . F 5 HOH A 12 212 159 HOH HOH . F 5 HOH A 13 213 103 HOH HOH . F 5 HOH A 14 214 106 HOH HOH . F 5 HOH A 15 215 107 HOH HOH . F 5 HOH A 16 216 116 HOH HOH . F 5 HOH A 17 217 121 HOH HOH . F 5 HOH A 18 218 124 HOH HOH . F 5 HOH A 19 219 134 HOH HOH . F 5 HOH A 20 220 138 HOH HOH . F 5 HOH A 21 221 139 HOH HOH . F 5 HOH A 22 222 140 HOH HOH . F 5 HOH A 23 223 146 HOH HOH . F 5 HOH A 24 224 149 HOH HOH . F 5 HOH A 25 225 150 HOH HOH . F 5 HOH A 26 226 151 HOH HOH . G 5 HOH B 1 201 123 HOH HOH . G 5 HOH B 2 202 111 HOH HOH . G 5 HOH B 3 203 110 HOH HOH . G 5 HOH B 4 204 104 HOH HOH . G 5 HOH B 5 205 115 HOH HOH . G 5 HOH B 6 206 133 HOH HOH . G 5 HOH B 7 207 101 HOH HOH . G 5 HOH B 8 208 113 HOH HOH . G 5 HOH B 9 209 152 HOH HOH . G 5 HOH B 10 210 128 HOH HOH . G 5 HOH B 11 211 129 HOH HOH . G 5 HOH B 12 212 126 HOH HOH . G 5 HOH B 13 213 136 HOH HOH . G 5 HOH B 14 214 120 HOH HOH . G 5 HOH B 15 215 148 HOH HOH . G 5 HOH B 16 216 102 HOH HOH . G 5 HOH B 17 217 105 HOH HOH . G 5 HOH B 18 218 108 HOH HOH . G 5 HOH B 19 219 109 HOH HOH . G 5 HOH B 20 220 112 HOH HOH . G 5 HOH B 21 221 114 HOH HOH . G 5 HOH B 22 222 117 HOH HOH . G 5 HOH B 23 223 125 HOH HOH . G 5 HOH B 24 224 130 HOH HOH . G 5 HOH B 25 225 132 HOH HOH . G 5 HOH B 26 226 135 HOH HOH . G 5 HOH B 27 227 142 HOH HOH . G 5 HOH B 28 228 143 HOH HOH . G 5 HOH B 29 229 144 HOH HOH . G 5 HOH B 30 230 145 HOH HOH . G 5 HOH B 31 231 147 HOH HOH . G 5 HOH B 32 232 153 HOH HOH . G 5 HOH B 33 233 154 HOH HOH . G 5 HOH B 34 234 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CO CO NCO . . . C 3 11.191 6.547 -0.752 1 79.58 ? CO NCO 101 A 1 HETATM 2 N N1 NCO . . . C 3 11.401 8.416 -1.352 1 79.84 ? N1 NCO 101 A 1 HETATM 3 N N2 NCO . . . C 3 13.064 6.238 -0.547 1 79.64 ? N2 NCO 101 A 1 HETATM 4 N N3 NCO . . . C 3 11.143 6.017 -2.65 1 79.58 ? N3 NCO 101 A 1 HETATM 5 N N4 NCO . . . C 3 11.162 7.116 1.116 1 79.84 ? N4 NCO 101 A 1 HETATM 6 N N5 NCO . . . C 3 10.901 4.698 -0.198 1 79.53 ? N5 NCO 101 A 1 HETATM 7 N N6 NCO . . . C 3 9.26 6.814 -0.862 1 79.68 ? N6 NCO 101 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #