data_4U79 # _model_server_result.job_id KyjMlO-IYLa_mHUp5wdRxw _model_server_result.datetime_utc '2025-07-30 12:02:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u79 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4U79 # _exptl.entry_id 4U79 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 566.673 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{4-[(3-{2-[(trans-4-aminocyclohexyl)amino]pyrimidin-4-yl}pyridin-2-yl)oxy]naphthalen-1-yl}benzenesulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4U79 _cell.length_a 54.933 _cell.length_b 71.632 _cell.length_c 106.595 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U79 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H30 N6 O3 S' _chem_comp.formula_weight 566.673 _chem_comp.id 3EL _chem_comp.mon_nstd_flag . _chem_comp.name N-{4-[(3-{2-[(trans-4-aminocyclohexyl)amino]pyrimidin-4-yl}pyridin-2-yl)oxy]naphthalen-1-yl}benzenesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C18 3EL doub 1 n y C17 C16 3EL sing 2 n y C18 C19 3EL sing 3 n y C16 C2 3EL doub 4 n y C19 C1 3EL doub 5 n y O3 S1 3EL doub 6 n n O2 S1 3EL doub 7 n n C2 C1 3EL sing 8 n y C2 C6 3EL sing 9 n y S1 N1 3EL sing 10 n n S1 C26 3EL sing 11 n n C1 C3 3EL sing 12 n y N1 C6 3EL sing 13 n n C6 C5 3EL doub 14 n y C31 C26 3EL doub 15 n y C31 C30 3EL sing 16 n y C26 C27 3EL sing 17 n y C3 O1 3EL sing 18 n n C3 C4 3EL doub 19 n y O1 C11 3EL sing 20 n n C14 C13 3EL doub 21 n y C14 N4 3EL sing 22 n y C13 C12 3EL sing 23 n y N4 C15 3EL doub 24 n y C30 C29 3EL doub 25 n y C11 N2 3EL doub 26 n y C11 C7 3EL sing 27 n y C5 C4 3EL sing 28 n y C12 C7 3EL sing 29 n n C12 N3 3EL doub 30 n y N2 C10 3EL sing 31 n y C15 N3 3EL sing 32 n y C15 N5 3EL sing 33 n n C7 C8 3EL doub 34 n y N5 C20 3EL sing 35 n n C27 C28 3EL doub 36 n y C10 C9 3EL doub 37 n y C25 C20 3EL sing 38 n n C25 C24 3EL sing 39 n n C8 C9 3EL sing 40 n y C20 C21 3EL sing 41 n n C29 C28 3EL sing 42 n y C24 C23 3EL sing 43 n n C21 C22 3EL sing 44 n n C23 C22 3EL sing 45 n n C23 N6 3EL sing 46 n n C21 H1 3EL sing 47 n n C21 H2 3EL sing 48 n n C22 H3 3EL sing 49 n n C22 H4 3EL sing 50 n n C23 H5 3EL sing 51 n n N6 H6 3EL sing 52 n n N6 H7 3EL sing 53 n n C24 H9 3EL sing 54 n n C24 H10 3EL sing 55 n n C25 H11 3EL sing 56 n n C25 H12 3EL sing 57 n n C20 H13 3EL sing 58 n n N5 H14 3EL sing 59 n n C14 H15 3EL sing 60 n n C13 H16 3EL sing 61 n n C8 H17 3EL sing 62 n n C9 H18 3EL sing 63 n n C10 H19 3EL sing 64 n n C4 H20 3EL sing 65 n n C5 H21 3EL sing 66 n n C19 H22 3EL sing 67 n n C18 H23 3EL sing 68 n n C17 H24 3EL sing 69 n n C16 H25 3EL sing 70 n n N1 H26 3EL sing 71 n n C27 H27 3EL sing 72 n n C28 H28 3EL sing 73 n n C29 H29 3EL sing 74 n n C30 H30 3EL sing 75 n n C31 H31 3EL sing 76 n n # _atom_sites.entry_id 4U79 _atom_sites.fract_transf_matrix[1][1] 0.018204 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01396 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009381 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3EL A 1 501 1 3EL UNL . C 3 HOH A 1 601 18 HOH HOH . C 3 HOH A 2 602 33 HOH HOH . C 3 HOH A 3 603 1 HOH HOH . C 3 HOH A 4 604 30 HOH HOH . C 3 HOH A 5 605 2 HOH HOH . C 3 HOH A 6 606 3 HOH HOH . C 3 HOH A 7 607 4 HOH HOH . C 3 HOH A 8 608 5 HOH HOH . C 3 HOH A 9 609 6 HOH HOH . C 3 HOH A 10 610 7 HOH HOH . C 3 HOH A 11 611 8 HOH HOH . C 3 HOH A 12 612 9 HOH HOH . C 3 HOH A 13 613 10 HOH HOH . C 3 HOH A 14 614 11 HOH HOH . C 3 HOH A 15 615 12 HOH HOH . C 3 HOH A 16 616 13 HOH HOH . C 3 HOH A 17 617 14 HOH HOH . C 3 HOH A 18 618 15 HOH HOH . C 3 HOH A 19 619 16 HOH HOH . C 3 HOH A 20 620 17 HOH HOH . C 3 HOH A 21 621 19 HOH HOH . C 3 HOH A 22 622 20 HOH HOH . C 3 HOH A 23 623 21 HOH HOH . C 3 HOH A 24 624 22 HOH HOH . C 3 HOH A 25 625 23 HOH HOH . C 3 HOH A 26 626 24 HOH HOH . C 3 HOH A 27 627 25 HOH HOH . C 3 HOH A 28 628 26 HOH HOH . C 3 HOH A 29 629 27 HOH HOH . C 3 HOH A 30 630 28 HOH HOH . C 3 HOH A 31 631 29 HOH HOH . C 3 HOH A 32 632 31 HOH HOH . C 3 HOH A 33 633 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C21 3EL . . . B 2 -2.854 29.812 -29.788 1 44.61 ? C21 3EL 501 A 1 HETATM 2 C C22 3EL . . . B 2 -1.493 29.715 -29.125 1 44.74 ? C22 3EL 501 A 1 HETATM 3 C C23 3EL . . . B 2 -0.642 30.931 -29.456 1 48.97 ? C23 3EL 501 A 1 HETATM 4 N N6 3EL . . . B 2 0.699 30.727 -28.916 1 52.45 ? N6 3EL 501 A 1 HETATM 5 C C24 3EL . . . B 2 -0.55 31.122 -30.969 1 43.95 ? C24 3EL 501 A 1 HETATM 6 C C25 3EL . . . B 2 -1.925 31.197 -31.608 1 42.35 ? C25 3EL 501 A 1 HETATM 7 C C20 3EL . . . B 2 -2.709 29.942 -31.298 1 43.06 ? C20 3EL 501 A 1 HETATM 8 N N5 3EL . . . B 2 -4.028 30.027 -31.914 1 42.82 ? N5 3EL 501 A 1 HETATM 9 C C15 3EL . . . B 2 -4.736 28.938 -32.126 1 41.05 ? C15 3EL 501 A 1 HETATM 10 N N3 3EL . . . B 2 -4.173 27.739 -31.965 1 43.21 ? N3 3EL 501 A 1 HETATM 11 N N4 3EL . . . B 2 -6 29.052 -32.5 1 35.71 ? N4 3EL 501 A 1 HETATM 12 C C14 3EL . . . B 2 -6.717 27.983 -32.712 1 39.09 ? C14 3EL 501 A 1 HETATM 13 C C13 3EL . . . B 2 -6.158 26.732 -32.558 1 40.53 ? C13 3EL 501 A 1 HETATM 14 C C12 3EL . . . B 2 -4.842 26.614 -32.168 1 42.65 ? C12 3EL 501 A 1 HETATM 15 C C7 3EL . . . B 2 -4.17 25.402 -31.992 1 48.29 ? C7 3EL 501 A 1 HETATM 16 C C8 3EL . . . B 2 -2.889 25.461 -31.499 1 53.7 ? C8 3EL 501 A 1 HETATM 17 C C9 3EL . . . B 2 -2.181 24.289 -31.326 1 57.36 ? C9 3EL 501 A 1 HETATM 18 C C10 3EL . . . B 2 -2.756 23.078 -31.656 1 55.14 ? C10 3EL 501 A 1 HETATM 19 N N2 3EL . . . B 2 -3.975 23.04 -32.132 1 55.05 ? N2 3EL 501 A 1 HETATM 20 C C11 3EL . . . B 2 -4.68 24.148 -32.313 1 50.22 ? C11 3EL 501 A 1 HETATM 21 O O1 3EL . . . B 2 -5.906 24.056 -32.816 1 50.41 ? O1 3EL 501 A 1 HETATM 22 C C3 3EL . . . B 2 -6.607 22.927 -33.022 1 54.98 ? C3 3EL 501 A 1 HETATM 23 C C4 3EL . . . B 2 -6.726 21.952 -32.055 1 53.33 ? C4 3EL 501 A 1 HETATM 24 C C5 3EL . . . B 2 -7.499 20.834 -32.297 1 54.59 ? C5 3EL 501 A 1 HETATM 25 C C1 3EL . . . B 2 -7.284 22.797 -34.225 1 56.39 ? C1 3EL 501 A 1 HETATM 26 C C19 3EL . . . B 2 -7.171 23.789 -35.188 1 49.25 ? C19 3EL 501 A 1 HETATM 27 C C18 3EL . . . B 2 -7.818 23.681 -36.396 1 46.55 ? C18 3EL 501 A 1 HETATM 28 C C17 3EL . . . B 2 -8.589 22.567 -36.637 1 54.35 ? C17 3EL 501 A 1 HETATM 29 C C16 3EL . . . B 2 -8.714 21.569 -35.677 1 59.05 ? C16 3EL 501 A 1 HETATM 30 C C2 3EL . . . B 2 -8.061 21.677 -34.462 1 57.66 ? C2 3EL 501 A 1 HETATM 31 C C6 3EL . . . B 2 -8.165 20.685 -33.495 1 59.38 ? C6 3EL 501 A 1 HETATM 32 N N1 3EL . . . B 2 -8.903 19.601 -33.683 1 68 ? N1 3EL 501 A 1 HETATM 33 S S1 3EL . . . B 2 -8.283 18.224 -34.252 1 78.13 ? S1 3EL 501 A 1 HETATM 34 O O2 3EL . . . B 2 -9.336 17.523 -35.012 1 70.65 ? O2 3EL 501 A 1 HETATM 35 O O3 3EL . . . B 2 -7.139 18.549 -35.117 1 84.33 ? O3 3EL 501 A 1 HETATM 36 C C26 3EL . . . B 2 -7.674 17.204 -33.052 1 89.37 ? C26 3EL 501 A 1 HETATM 37 C C27 3EL . . . B 2 -8.155 17.273 -31.754 1 89.96 ? C27 3EL 501 A 1 HETATM 38 C C28 3EL . . . B 2 -7.633 16.425 -30.798 1 92.6 ? C28 3EL 501 A 1 HETATM 39 C C29 3EL . . . B 2 -6.639 15.523 -31.143 1 94.45 ? C29 3EL 501 A 1 HETATM 40 C C30 3EL . . . B 2 -6.166 15.455 -32.447 1 94.49 ? C30 3EL 501 A 1 HETATM 41 C C31 3EL . . . B 2 -6.686 16.301 -33.41 1 90.27 ? C31 3EL 501 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 41 #