data_4U7L # _model_server_result.job_id gZMfG4Nmr6kBVhUD4Ifulw _model_server_result.datetime_utc '2025-01-02 21:57:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u7l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 4U7L # _exptl.entry_id 4U7L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4U7L _cell.length_a 38.94 _cell.length_b 93.76 _cell.length_c 169.43 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U7L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 2521 NAG 2 n B NAG 2 B 2 NAG A 2522 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 1 1_555 A SG CYS 8 A CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 6 A CYS 5 1_555 A SG CYS 15 A CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 405 A CYS 404 1_555 A SG CYS 429 A CYS 428 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 405 A CYS 404 1_555 A SG CYS 429 A CYS 428 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 407 A CYS 406 1_555 A SG CYS 450 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 35 A ASN 34 1_555 C C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? covale ? covale2 A ND2 ASN 111 A ASN 110 1_555 D C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale3 A ND2 ASN 207 A ASN 206 1_555 E C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale4 A ND2 ASN 253 A ASN 252 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? covale ? covale5 A ND2 ASN 279 A ASN 278 1_555 F C1 NAG . A NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale6 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4U7L _atom_sites.fract_transf_matrix[1][1] 0.025681 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010666 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005902 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 501 600 NAG NAG . D 3 NAG A 1 502 1101 NAG NAG . E 3 NAG A 1 503 2061 NAG NAG . F 3 NAG A 1 506 2781 NAG NAG . G 4 CL A 1 507 100 CL CL . H 5 HOH A 1 601 38 HOH HOH . H 5 HOH A 2 602 7 HOH HOH . H 5 HOH A 3 603 23 HOH HOH . H 5 HOH A 4 604 28 HOH HOH . H 5 HOH A 5 605 30 HOH HOH . H 5 HOH A 6 606 3 HOH HOH . H 5 HOH A 7 607 1 HOH HOH . H 5 HOH A 8 608 24 HOH HOH . H 5 HOH A 9 609 6 HOH HOH . H 5 HOH A 10 610 10 HOH HOH . H 5 HOH A 11 611 27 HOH HOH . H 5 HOH A 12 612 14 HOH HOH . H 5 HOH A 13 613 22 HOH HOH . H 5 HOH A 14 614 21 HOH HOH . H 5 HOH A 15 615 13 HOH HOH . H 5 HOH A 16 616 12 HOH HOH . H 5 HOH A 17 617 8 HOH HOH . H 5 HOH A 18 618 26 HOH HOH . H 5 HOH A 19 619 4 HOH HOH . H 5 HOH A 20 620 9 HOH HOH . H 5 HOH A 21 621 18 HOH HOH . H 5 HOH A 22 622 16 HOH HOH . H 5 HOH A 23 623 29 HOH HOH . H 5 HOH A 24 624 5 HOH HOH . H 5 HOH A 25 625 25 HOH HOH . H 5 HOH A 26 626 17 HOH HOH . H 5 HOH A 27 627 32 HOH HOH . H 5 HOH A 28 628 34 HOH HOH . H 5 HOH A 29 629 2 HOH HOH . H 5 HOH A 30 630 31 HOH HOH . H 5 HOH A 31 631 33 HOH HOH . H 5 HOH A 32 632 15 HOH HOH . H 5 HOH A 33 633 11 HOH HOH . H 5 HOH A 34 634 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 3 -12.987 -6.025 -8.721 0.88 96.81 ? C1 NAG 503 A 1 HETATM 2 C C2 NAG . . . E 3 -13.316 -7.076 -7.663 0.88 108.46 ? C2 NAG 503 A 1 HETATM 3 C C3 NAG . . . E 3 -14.781 -7.506 -7.783 0.88 116.59 ? C3 NAG 503 A 1 HETATM 4 C C4 NAG . . . E 3 -15.142 -7.792 -9.235 0.88 120.42 ? C4 NAG 503 A 1 HETATM 5 C C5 NAG . . . E 3 -14.862 -6.569 -10.106 0.88 118.33 ? C5 NAG 503 A 1 HETATM 6 C C6 NAG . . . E 3 -16.118 -5.935 -10.657 0.88 121.96 ? C6 NAG 503 A 1 HETATM 7 C C7 NAG . . . E 3 -11.32 -8.364 -7.049 0.88 113.51 ? C7 NAG 503 A 1 HETATM 8 C C8 NAG . . . E 3 -10.527 -9.612 -7.294 0.88 113.82 ? C8 NAG 503 A 1 HETATM 9 N N2 NAG . . . E 3 -12.435 -8.226 -7.774 0.88 111.8 ? N2 NAG 503 A 1 HETATM 10 O O3 NAG . . . E 3 -15.625 -6.487 -7.259 0.88 118.25 ? O3 NAG 503 A 1 HETATM 11 O O4 NAG . . . E 3 -14.389 -8.898 -9.721 0.88 123.89 ? O4 NAG 503 A 1 HETATM 12 O O5 NAG . . . E 3 -14.191 -5.561 -9.334 0.88 109.6 ? O5 NAG 503 A 1 HETATM 13 O O6 NAG . . . E 3 -17.192 -6.865 -10.708 0.88 123.89 ? O6 NAG 503 A 1 HETATM 14 O O7 NAG . . . E 3 -10.967 -7.519 -6.232 0.88 113.22 ? O7 NAG 503 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #