data_4U7O
#
_model_server_result.job_id            X0GVGMgeqgoND6nhceYzgQ 
_model_server_result.datetime_utc      '2024-11-14 12:43:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4u7o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    4U7O 
#
_exptl.entry_id    4U7O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              426.216 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'AMP PHOSPHORAMIDATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4U7O 
_cell.length_a            54.528 
_cell.length_b            98.389 
_cell.length_c            116.369 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4U7O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H16 N6 O9 P2' 
_chem_comp.formula_weight    426.216 
_chem_comp.id                AN2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'AMP PHOSPHORAMIDATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3B PB AN2 sing 13 n n 
N3B H3B1 AN2 sing 14 n n 
N3B H3B2 AN2 sing 15 n n 
PB O2B AN2 sing 16 n n 
PB O1B AN2 doub 17 n n 
PB O3A AN2 sing 18 n n 
O2B HO2B AN2 sing 19 n n 
O3A PA AN2 sing 20 n n 
PA O1A AN2 doub 21 n n 
PA O2A AN2 sing 22 n n 
PA O5' AN2 sing 23 n n 
O2A HO2A AN2 sing 24 n n 
O5' C5' AN2 sing 25 n n 
C5' C4' AN2 sing 26 n n 
C5' "H5'1" AN2 sing 27 n n 
C5' "H5'2" AN2 sing 28 n n 
C4' O4' AN2 sing 29 n n 
C4' C3' AN2 sing 30 n n 
C4' H4' AN2 sing 31 n n 
O4' C1' AN2 sing 32 n n 
C3' O3' AN2 sing 33 n n 
C3' C2' AN2 sing 34 n n 
C3' H3' AN2 sing 35 n n 
O3' HA AN2 sing 36 n n 
C2' O2' AN2 sing 37 n n 
C2' C1' AN2 sing 38 n n 
C2' H2' AN2 sing 39 n n 
O2' HB AN2 sing 40 n n 
C1' N9 AN2 sing 41 n n 
C1' H1' AN2 sing 42 n n 
N9 C8 AN2 sing 43 n y 
N9 C4 AN2 sing 44 n y 
C8 N7 AN2 doub 45 n y 
C8 H8 AN2 sing 46 n n 
N7 C5 AN2 sing 47 n y 
C5 C4 AN2 doub 48 n y 
C5 C6 AN2 sing 49 n y 
C4 N3 AN2 sing 50 n y 
N3 C2 AN2 doub 51 n y 
C2 N1 AN2 sing 52 n y 
C2 H2 AN2 sing 53 n n 
N1 C6 AN2 doub 54 n y 
C6 N6 AN2 sing 55 n n 
N6 H6N1 AN2 sing 56 n n 
N6 H6N2 AN2 sing 57 n n 
#
_atom_sites.entry_id                     4U7O 
_atom_sites.fract_transf_matrix[1][1]    0.018339 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010164 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008593 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AN2 A 1 701 1 AN2 AN2 . 
D 2 AN2 B 1 701 1 AN2 AN2 . 
E 3 HOH A 1 801 27 HOH HOH . 
E 3 HOH A 2 802 7 HOH HOH . 
E 3 HOH A 3 803 1 HOH HOH . 
E 3 HOH A 4 804 2 HOH HOH . 
E 3 HOH A 5 805 3 HOH HOH . 
E 3 HOH A 6 806 5 HOH HOH . 
E 3 HOH A 7 807 6 HOH HOH . 
E 3 HOH A 8 808 8 HOH HOH . 
E 3 HOH A 9 809 10 HOH HOH . 
E 3 HOH A 10 810 12 HOH HOH . 
E 3 HOH A 11 811 14 HOH HOH . 
E 3 HOH A 12 812 16 HOH HOH . 
E 3 HOH A 13 813 19 HOH HOH . 
E 3 HOH A 14 814 20 HOH HOH . 
E 3 HOH A 15 815 23 HOH HOH . 
E 3 HOH A 16 816 26 HOH HOH . 
E 3 HOH A 17 817 30 HOH HOH . 
E 3 HOH A 18 818 34 HOH HOH . 
F 3 HOH B 1 801 31 HOH HOH . 
F 3 HOH B 2 802 13 HOH HOH . 
F 3 HOH B 3 803 33 HOH HOH . 
F 3 HOH B 4 804 4 HOH HOH . 
F 3 HOH B 5 805 9 HOH HOH . 
F 3 HOH B 6 806 11 HOH HOH . 
F 3 HOH B 7 807 15 HOH HOH . 
F 3 HOH B 8 808 17 HOH HOH . 
F 3 HOH B 9 809 18 HOH HOH . 
F 3 HOH B 10 810 21 HOH HOH . 
F 3 HOH B 11 811 22 HOH HOH . 
F 3 HOH B 12 812 24 HOH HOH . 
F 3 HOH B 13 813 25 HOH HOH . 
F 3 HOH B 14 814 28 HOH HOH . 
F 3 HOH B 15 815 29 HOH HOH . 
F 3 HOH B 16 816 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N3B AN2 . . . D 2 -16.298 16.006 -2.671 1 63.23 ? N3B AN2 701 B 1 
HETATM 2 P PB AN2 . . . D 2 -17.528 16.23 -3.755 1 75.24 ? PB AN2 701 B 1 
HETATM 3 O O2B AN2 . . . D 2 -17.149 17.366 -4.661 1 96.42 ? O2B AN2 701 B 1 
HETATM 4 O O1B AN2 . . . D 2 -17.856 14.993 -4.563 1 57.56 ? O1B AN2 701 B 1 
HETATM 5 O O3A AN2 . . . D 2 -18.869 16.652 -3.02 1 74.08 ? O3A AN2 701 B 1 
HETATM 6 P PA AN2 . . . D 2 -19.738 15.846 -1.943 1 60.96 ? PA AN2 701 B 1 
HETATM 7 O O1A AN2 . . . D 2 -21.141 15.601 -2.475 1 49.37 ? O1A AN2 701 B 1 
HETATM 8 O O2A AN2 . . . D 2 -19.197 14.48 -1.569 1 46.65 ? O2A AN2 701 B 1 
HETATM 9 O O5' AN2 . . . D 2 -19.74 16.765 -0.629 1 63.61 ? O5' AN2 701 B 1 
HETATM 10 C C5' AN2 . . . D 2 -20.31 18.075 -0.671 1 62 ? C5' AN2 701 B 1 
HETATM 11 C C4' AN2 . . . D 2 -19.544 18.948 0.344 1 61.05 ? C4' AN2 701 B 1 
HETATM 12 O O4' AN2 . . . D 2 -19.571 18.483 1.557 1 53.71 ? O4' AN2 701 B 1 
HETATM 13 C C3' AN2 . . . D 2 -18.044 18.916 -0.018 1 60.68 ? C3' AN2 701 B 1 
HETATM 14 O O3' AN2 . . . D 2 -17.864 19.795 -1.028 1 70.51 ? O3' AN2 701 B 1 
HETATM 15 C C2' AN2 . . . D 2 -17.404 19.354 1.321 1 57.07 ? C2' AN2 701 B 1 
HETATM 16 O O2' AN2 . . . D 2 -17.488 20.841 1.403 1 52.38 ? O2' AN2 701 B 1 
HETATM 17 C C1' AN2 . . . D 2 -18.169 18.832 2.26 1 58.71 ? C1' AN2 701 B 1 
HETATM 18 N N9 AN2 . . . D 2 -17.726 17.641 2.905 1 57.86 ? N9 AN2 701 B 1 
HETATM 19 C C8 AN2 . . . D 2 -18.074 16.369 2.525 1 46.65 ? C8 AN2 701 B 1 
HETATM 20 N N7 AN2 . . . D 2 -17.464 15.513 3.383 1 51.07 ? N7 AN2 701 B 1 
HETATM 21 C C5 AN2 . . . D 2 -16.761 16.237 4.313 1 40.19 ? C5 AN2 701 B 1 
HETATM 22 C C4 AN2 . . . D 2 -16.927 17.551 4.014 1 46.2 ? C4 AN2 701 B 1 
HETATM 23 N N3 AN2 . . . D 2 -16.332 18.496 4.795 1 47.96 ? N3 AN2 701 B 1 
HETATM 24 C C2 AN2 . . . D 2 -15.567 18.145 5.873 1 47.01 ? C2 AN2 701 B 1 
HETATM 25 N N1 AN2 . . . D 2 -15.417 16.822 6.176 1 49.73 ? N1 AN2 701 B 1 
HETATM 26 C C6 AN2 . . . D 2 -15.992 15.872 5.42 1 43.68 ? C6 AN2 701 B 1 
HETATM 27 N N6 AN2 . . . D 2 -15.788 14.492 5.779 1 56.52 ? N6 AN2 701 B 1 
#
_model_server_stats.io_time_ms              111 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#