data_4U80 # _model_server_result.job_id F_fWARtkg6YYotpDl6RGsQ _model_server_result.datetime_utc '2024-11-13 17:16:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u80 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4U80 # _exptl.entry_id 4U80 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4U80 _cell.length_a 81.899 _cell.length_b 81.899 _cell.length_c 129.24 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U80 _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 135 A ASN 195 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc2 A OD2 ASP 148 A ASP 208 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc3 B O3G ANP . A ANP 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc4 B O1B ANP . A ANP 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc5 B O1A ANP . A ANP 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc6 B O3A ANP . A ANP 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc7 D MG MG . A MG 503 1_555 E O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 61 n n PG O2G ANP sing 62 n n PG O3G ANP sing 63 n n PG N3B ANP sing 64 n n O2G HOG2 ANP sing 65 n n O3G HOG3 ANP sing 66 n n PB O1B ANP doub 67 n n PB O2B ANP sing 68 n n PB N3B ANP sing 69 n n PB O3A ANP sing 70 n n O2B HOB2 ANP sing 71 n n N3B HNB1 ANP sing 72 n n PA O1A ANP doub 73 n n PA O2A ANP sing 74 n n PA O3A ANP sing 75 n n PA O5' ANP sing 76 n n O2A HOA2 ANP sing 77 n n O5' C5' ANP sing 78 n n C5' C4' ANP sing 79 n n C5' "H5'1" ANP sing 80 n n C5' "H5'2" ANP sing 81 n n C4' O4' ANP sing 82 n n C4' C3' ANP sing 83 n n C4' H4' ANP sing 84 n n O4' C1' ANP sing 85 n n C3' O3' ANP sing 86 n n C3' C2' ANP sing 87 n n C3' H3' ANP sing 88 n n O3' HO3' ANP sing 89 n n C2' O2' ANP sing 90 n n C2' C1' ANP sing 91 n n C2' H2' ANP sing 92 n n O2' HO2' ANP sing 93 n n C1' N9 ANP sing 94 n n C1' H1' ANP sing 95 n n N9 C8 ANP sing 96 n y N9 C4 ANP sing 97 n y C8 N7 ANP doub 98 n y C8 H8 ANP sing 99 n n N7 C5 ANP sing 100 n y C5 C6 ANP sing 101 n y C5 C4 ANP doub 102 n y C6 N6 ANP sing 103 n n C6 N1 ANP doub 104 n y N6 HN61 ANP sing 105 n n N6 HN62 ANP sing 106 n n N1 C2 ANP sing 107 n y C2 N3 ANP doub 108 n y C2 H2 ANP sing 109 n n N3 C4 ANP sing 110 n y # _atom_sites.entry_id 4U80 _atom_sites.fract_transf_matrix[1][1] 0.01221 _atom_sites.fract_transf_matrix[1][2] 0.00705 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014099 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007738 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 501 1 ANP DRG . C 3 3EX A 1 502 1 3EX XXX . D 4 MG A 1 503 3 MG MG . E 5 HOH A 1 601 12 HOH HOH . E 5 HOH A 2 602 6 HOH HOH . E 5 HOH A 3 603 13 HOH HOH . E 5 HOH A 4 604 11 HOH HOH . E 5 HOH A 5 605 1 HOH HOH . E 5 HOH A 6 606 2 HOH HOH . E 5 HOH A 7 607 3 HOH HOH . E 5 HOH A 8 608 4 HOH HOH . E 5 HOH A 9 609 5 HOH HOH . E 5 HOH A 10 610 7 HOH HOH . E 5 HOH A 11 611 8 HOH HOH . E 5 HOH A 12 612 9 HOH HOH . E 5 HOH A 13 613 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 -24.095 27.549 11.59 1 71.78 ? PG ANP 501 A 1 HETATM 2 O O1G ANP . . . B 2 -23.251 28.135 10.354 1 82.9 ? O1G ANP 501 A 1 HETATM 3 O O2G ANP . . . B 2 -24.259 28.577 12.643 1 75.81 ? O2G ANP 501 A 1 HETATM 4 O O3G ANP . . . B 2 -25.572 27.118 11.112 1 149.44 ? O3G ANP 501 A 1 HETATM 5 P PB ANP . . . B 2 -23.978 25.443 13.429 1 52.64 ? PB ANP 501 A 1 HETATM 6 O O1B ANP . . . B 2 -25.319 24.681 12.963 1 49.02 ? O1B ANP 501 A 1 HETATM 7 O O2B ANP . . . B 2 -22.941 24.539 13.962 1 57.47 ? O2B ANP 501 A 1 HETATM 8 N N3B ANP . . . B 2 -23.229 26.227 12.155 1 68.93 ? N3B ANP 501 A 1 HETATM 9 P PA ANP . . . B 2 -25.261 26.443 15.908 1 43.52 ? PA ANP 501 A 1 HETATM 10 O O1A ANP . . . B 2 -26.711 26.369 15.624 1 51.44 ? O1A ANP 501 A 1 HETATM 11 O O2A ANP . . . B 2 -25.015 27.806 16.715 1 60.93 ? O2A ANP 501 A 1 HETATM 12 O O3A ANP . . . B 2 -24.449 26.491 14.533 1 41.02 ? O3A ANP 501 A 1 HETATM 13 O O5' ANP . . . B 2 -24.779 25.183 16.764 1 40.17 ? O5' ANP 501 A 1 HETATM 14 C C5' ANP . . . B 2 -23.418 24.768 16.861 1 54.59 ? C5' ANP 501 A 1 HETATM 15 C C4' ANP . . . B 2 -23.388 23.303 17.318 1 59.29 ? C4' ANP 501 A 1 HETATM 16 O O4' ANP . . . B 2 -24.157 23.166 18.534 1 49.89 ? O4' ANP 501 A 1 HETATM 17 C C3' ANP . . . B 2 -24.079 22.385 16.283 1 57.31 ? C3' ANP 501 A 1 HETATM 18 O O3' ANP . . . B 2 -23.184 21.883 15.276 1 64.99 ? O3' ANP 501 A 1 HETATM 19 C C2' ANP . . . B 2 -24.49 21.221 17.174 1 48.32 ? C2' ANP 501 A 1 HETATM 20 O O2' ANP . . . B 2 -23.384 20.335 17.214 1 59.15 ? O2' ANP 501 A 1 HETATM 21 C C1' ANP . . . B 2 -24.718 21.84 18.562 1 43.99 ? C1' ANP 501 A 1 HETATM 22 N N9 ANP . . . B 2 -26.144 21.899 18.871 1 46.79 ? N9 ANP 501 A 1 HETATM 23 C C8 ANP . . . B 2 -27.029 22.851 18.479 1 46.16 ? C8 ANP 501 A 1 HETATM 24 N N7 ANP . . . B 2 -28.206 22.568 18.948 1 48.75 ? N7 ANP 501 A 1 HETATM 25 C C5 ANP . . . B 2 -28.157 21.417 19.666 1 49.98 ? C5 ANP 501 A 1 HETATM 26 C C6 ANP . . . B 2 -29.088 20.635 20.388 1 49.67 ? C6 ANP 501 A 1 HETATM 27 N N6 ANP . . . B 2 -30.423 21.017 20.472 1 44.23 ? N6 ANP 501 A 1 HETATM 28 N N1 ANP . . . B 2 -28.662 19.517 20.994 1 48.04 ? N1 ANP 501 A 1 HETATM 29 C C2 ANP . . . B 2 -27.402 19.133 20.921 1 48.86 ? C2 ANP 501 A 1 HETATM 30 N N3 ANP . . . B 2 -26.503 19.843 20.257 1 57.82 ? N3 ANP 501 A 1 HETATM 31 C C4 ANP . . . B 2 -26.829 20.974 19.621 1 54.75 ? C4 ANP 501 A 1 HETATM 32 H H4' ANP . . . B 2 -22.36 22.98 17.484 1 71.15 ? H4' ANP 501 A 1 HETATM 33 H H3' ANP . . . B 2 -24.948 22.87 15.838 1 68.77 ? H3' ANP 501 A 1 HETATM 34 H H2' ANP . . . B 2 -25.388 20.727 16.801 1 57.99 ? H2' ANP 501 A 1 HETATM 35 H H1' ANP . . . B 2 -24.205 21.246 19.319 1 52.79 ? H1' ANP 501 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #